Array 1 46241-46541 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNT01000015.1 Bifidobacterium longum strain N3E01-2 scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 46241 33 97.0 33 ................................G CATTGGGCGGCGATTTCGGGGGTGAGGGGCATG 46307 33 97.0 33 ................................T GACTGTAGGCCAGCACCTGAGATTCGACCGCCA 46373 33 100.0 36 ................................. TGCAGGTATGGGGCTCGTATGATACTATTTTCAGTA 46442 33 100.0 34 ................................. TCTCGATAAGATACCATCTGACGAAACCACCGCC 46509 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 98.2 34 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGCGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTCATCAAATTATTAAAATCACGGAACGTCGTGTCGCACCCCACTGGGGTGCGTGGATTGAAATAAATCAAGCGGACCATAACCCGACACGTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTCGCACCCCACTGGGGTGCGTGGATTGAAATACGACACCATAAGTCCACACGATCATTAAGGGGTCGCAC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 120432-118275 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNT01000007.1 Bifidobacterium longum strain N3E01-2 scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 120431 33 97.0 33 ................................C ATGCTGGCCGGGCTGATCGCGGCGCGGGTGGCG 120365 33 100.0 34 ................................. ACGACACCACACCACGTGTCACTAACCCAACCAG 120298 33 97.0 33 ................................G AACTGCCAGCTGGAGGAGGCGTTTTTACTTGCC 120232 33 97.0 34 ................................C TACTTCACATTCAATATCATGGACTTCTAAAAAT 120165 33 97.0 35 ................................T CCAAACGTCCGCTAGCCATTCTGCCCGCCAAGGTC 120097 33 97.0 35 ................................T TTGACCTCGAACTAGTGTCGGAAGACAAGCGCAAG 120029 33 97.0 32 ................................T CAGGCTTTCCGCCGATTATAAGGTTCCCGTGG 119964 33 100.0 33 ................................. CGTACGGGAACACGTTGTCGTAGGTGTCGTGCA 119898 33 100.0 33 ................................. ATTGCGTGTTAGCGTAAATACGCGCTATAGTAG 119832 33 100.0 34 ................................. ATTTTTCCAAGAAGTCCAAGGGCAAGAAGGCTGT 119765 33 100.0 33 ................................. AACAATGTTCATCACCACCGAACCATGCCAATA 119699 33 97.0 34 ................................C GTGGTGCCGGCGACATGGCCGAATCAGCGGCCGG 119632 33 97.0 35 ................................G ATAACCAAGAAAATCGTCAAGGTCTCGGGCGGCGT 119564 33 100.0 32 ................................. CTTCAACGGACATCGGCTCGGGCCGGTCTCCG 119499 33 97.0 33 ................................G ACTGATCCCGATACCTGGGCGTCATACCCGGAG 119433 33 97.0 34 ................................C GAAGGAGCCGTGGATGGGATTTCTGAACAATCTG 119366 33 97.0 36 ................................T CGTAGGCTGTGCGAATCTTGTCCTCGTTGGCCTTGC 119297 33 100.0 33 ................................. CTGTCTCCACCTGTTCGGGGAATAGTTGAAACG 119231 33 100.0 31 ................................. CCACGTCGGCAACAGAACCGGACGACGGGTT 119167 33 97.0 35 ................................T TTGATTTCGGCATACCGTTCGATGCCGACCCGGAG 119099 33 97.0 32 ................................T CGTTGATGGGGCCCAGTCGTTTGCTCAGGGCG 119034 33 100.0 32 ................................. AGCAGGGCATCCTGCCCGTCAAGTTCGCCGCC 118969 33 100.0 33 ................................. TCATCCACGCTGACTTGAATGGCGTGCTTATCG 118903 33 97.0 32 ................................T AAATGGCAGTGAACGTGACCCAGAAAGACCAG 118838 33 97.0 34 ................................C TCCTTGTTGAGTCGTGTTTCGATTTCGATGCACA 118771 33 97.0 33 ................................C ACAGCGAGACGTAATACCGGTTGGCCCTGCCAT 118705 33 97.0 33 ................................C CCGAGCTGTATCACAACGCAAAATTCAAGCTTG 118639 33 97.0 33 ................................T TGTCACTATCTTATTTGATGTTGGCGCTCCCGG 118573 33 100.0 35 ................................. ATTGGTCATCACATCATCGCTCGAAAGGAGCAACA 118505 33 100.0 33 ................................. TTCCGGTTTGCGTAGGCATCTGCCTGATTGAAA 118439 33 100.0 34 ................................. CTGCCCGAATGATTCGGGTGGAGGTTTCATCGAG 118372 33 100.0 32 ................................. CCCAGGGCAAGGACCTCGCCAAGGACGTGGCC 118307 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 33 33 98.4 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : CCATCAGCCCACACTACGGAAAAACACTGCCGAACCTGTCGAACAAACATTGAAGCAAAACACACTGGGGTGCGTGGATTGAAATCTTCCGCGAGCAGATCGGCCCAATCATCAGCGCGTCGCACCCCACTGGGGTGCGTGGATTGAAATCGCAGAGCCCCTTGTGTTTGCCGCAGCCTCCATGGTCGCACCCCACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGTGCGTGGATTGAAATCACACGTAACTCATTCGAGAGTCACAATAGTA # Right flank : AGAACAGATTCGTAGGACACTGCGAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTATGATCTCTCTGTCCTAATTAGAGCACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTCTCCCACGGGAACTCAACGTCTGTGCGGCCGAAGTGGCCGTACGCGGCGGTCTTCAAGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGCACGGCGGCGGCGATCTGGCCTCGCGTCACACCCTGCTCGGTGCCGAAGGTCTCCACGTTGACGGACACCGGGTCGGCAACGCCAATAGCGTAGGCGATCTGGATCTCGACTTTGTGAGCCAAGCCGGCAGCTACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCGGAACGATCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCCACCGCCGTGGTG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //