Array 1 43079-44327 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHHP01000038.1 Escherichia coli P4-NR contig00038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43079 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 43140 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 43201 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 43262 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 43323 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 43384 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 43445 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 43506 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 43567 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 43628 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 43689 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 43750 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 43811 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 43872 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 43933 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 43994 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 44055 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 44116 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 44177 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 44238 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 44299 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70027-70971 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHHP01000038.1 Escherichia coli P4-NR contig00038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70027 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 70088 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 70149 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 70210 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 70271 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 70332 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 70393 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 70454 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 70515 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 70576 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 70637 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 70698 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 70760 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 70821 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 70882 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 70943 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //