Array 1 920-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQM01000050.1 Salmonella enterica strain BCW_4003 NODE_50_length_24588_cov_3.0073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 919 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 858 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 797 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 736 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 675 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 614 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 553 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 492 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 431 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 370 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 309 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 248 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 187 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 126 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 65 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GAAAACTGCACCGCCGCTGCCACTGAGTTTGCTGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 683-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQM01000057.1 Salmonella enterica strain BCW_4003 NODE_57_length_17108_cov_2.93012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 682 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 621 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 560 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 499 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 438 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 377 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 316 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 255 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 194 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 133 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 72 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GGCGGGCAACAATTTTAGAGGGGCTGCATTCGCGTGTTCCCCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17064-16853 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQM01000057.1 Salmonella enterica strain BCW_4003 NODE_57_length_17108_cov_2.93012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17063 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 17002 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 16941 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 16880 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGGATAAACCGAAAACTGCACCGCCGCTGCCACTGAGTTTGC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38-1046 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQM01000015.1 Salmonella enterica strain BCW_4003 NODE_15_length_108969_cov_2.90798, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 100 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 162 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 223 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 284 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 345 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 406 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 467 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 528 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 589 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 651 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 712 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 773 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 834 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 895 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 956 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1017 29 93.1 0 A..............A............. | A [1043] ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCCGGCGGGCAACAATTTTAGAGGGGCTGCATTCGCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //