Array 1 4126082-4124404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010134.1 Escherichia coli strain D1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4126081 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 4126020 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 4125958 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 4125897 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 4125836 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 4125775 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 4125714 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 4125653 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 4125592 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 4125531 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 4125469 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 4125408 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 4125347 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 4125286 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 4125225 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 4125164 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 4125103 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 4125042 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 4124981 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 4124920 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 4124859 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 4124798 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 4124737 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 4124676 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 4124615 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 4124554 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 4124493 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 4124432 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4142893-4141583 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010134.1 Escherichia coli strain D1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4142892 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 4142831 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 4142770 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 4142709 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 4142648 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 4142587 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 4142526 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 4142465 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 4142404 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 4142343 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 4142282 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 4142221 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 4142160 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 4142099 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 4142038 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 4141977 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 4141916 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 4141855 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 4141794 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 4141733 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 4141672 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 4141611 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //