Array 1 479361-479509 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBE01000004.1 Cronobacter sakazakii strain HE35 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 479361 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 479421 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 479482 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 201095-203746 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBE01000001.1 Cronobacter sakazakii strain HE35 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201095 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 201156 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 201217 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 201278 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 201339 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 201400 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 201461 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 201522 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 201583 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 201644 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 201705 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 201766 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 201827 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 201888 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 201949 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 202010 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 202071 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 202132 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 202193 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 202254 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 202315 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 202376 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 202437 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 202498 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 202559 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 202620 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 202681 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 202742 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 202803 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 202864 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 202925 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 202986 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 203047 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 203108 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 203169 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 203230 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 203291 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 203352 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 203413 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 203474 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 203535 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 203596 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 203657 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 203718 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230447-231635 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBE01000001.1 Cronobacter sakazakii strain HE35 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230447 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 230508 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 230569 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 230630 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 230691 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 230752 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 230813 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 230874 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 230935 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 230996 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 231057 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 231118 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 231179 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 231240 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 231301 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 231362 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 231423 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 231485 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 231546 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 231607 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //