Array 1 56014-59764 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHM01000004.1 Vibrio cholerae strain N2783 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 56014 28 100.0 33 ............................ CAGGTCTTTACCAACAAACGCTAAATCCAACGT 56075 28 100.0 33 ............................ CCCTAAAGCTCTCTGTGATGTACGCCAACGGCA 56136 28 100.0 33 ............................ TCAAGCTATTGCCAGTGTGGTGGGCGGCGTTTC 56197 28 100.0 33 ............................ CGGCGAAGCGGTATCTATCAAAGCTACAAGCCC 56258 28 100.0 33 ............................ TAAATGGATTTGGCTTGGTGATGCCGAAGGTCC 56319 28 100.0 33 ............................ CTGCTTGGCGTCCGATTCGGTGATCATGCTTGA 56380 28 100.0 33 ............................ TGCCAATGATGTGGACGGGTCTCTGGTCAACAG 56441 28 100.0 33 ............................ TACAAGAACAGCCGCAAAGCGGCTTGAGGGTGG 56502 28 100.0 33 ............................ CACTGCCCAGCGCCCAATCTCCCGCCCTGAGTG 56563 28 100.0 33 ............................ CAGGGTAGGATGCGCGTCTCAAGCGTGTGCTGT 56624 28 100.0 33 ............................ CAACTCTGCATTACCGAGTGCAAACCAAAGGCA 56685 28 100.0 33 ............................ CATATCCGTGCGGATACTCACGAGCTAATCCGC 56746 28 100.0 34 ............................ TACGCGACTTTATTCGATCGGTAGTAGCGGTCGG 56808 28 100.0 33 ............................ TAATCAGTTGGCAAGGCGTAAGAGAGCAAGAGT 56869 28 100.0 33 ............................ TACTGCGCTTTTCTTGCAGTTACTGGAAGTTTG 56930 28 100.0 33 ............................ TTGGTCAAGCTCGCGGCTTTGAAACTGGGTTTG 56991 28 100.0 33 ............................ TCAATAGCCCATATGTAGGCGGTGGCAAGGCTT 57052 28 100.0 33 ............................ TCTTGTGGGTTGGTCGTTTGTTTGTGGGCACTT 57113 28 100.0 33 ............................ TACTGATTGCTTTGGGTGGATGTGCGAGCCCTG 57174 28 100.0 33 ............................ CGCAGACCTACACCAACTACAATCAATACACTG 57235 28 100.0 33 ............................ TAGAGTTGCGCTTGTGGGATGCGGAATGTCTCT 57296 28 100.0 33 ............................ CACATTATTTGTCGAGTCGATTTCGTCATACCC 57357 28 100.0 33 ............................ CGCTGAATTGTCGACGTTCAGCATGGAGCTTGC 57418 28 100.0 33 ............................ CTGGGTGGCGCAGAACAACTGGCTTTCCTTTGT 57479 28 100.0 33 ............................ CGATTCGCAAATGTCACCTTTCTGGCGTTGGGT 57540 28 100.0 33 ............................ CCAGTAGCGATACTCAGTGCGACCCCATGCTTT 57601 28 100.0 33 ............................ CATGGAATACAAGTCATCTTGGTTCGCTCGCAA 57662 28 100.0 33 ............................ TCAGTGTCGGCAAAGCGCCAGACATGAACGAGA 57723 28 100.0 33 ............................ TCCGAAACGCGCCGCCGAGAAAGTGCTTTTCTT 57784 28 100.0 33 ............................ CACAAGGGCGAAAACTCAAGTCAAAAGCGCGTG 57845 28 100.0 33 ............................ TGTGATCCAAGCTTTTGCAGATCTGCCAAAAGT 57906 28 100.0 33 ............................ TCCGCCGCAGAACTCGTGTGAAACAAGGCTGTC 57967 28 100.0 33 ............................ TCCAAATCGCGCGTAGCTTGGTGACTTCTAACG 58028 28 100.0 33 ............................ CACGAGAATATTGGTGAGGGATGTTAATCTCGA 58089 28 100.0 33 ............................ CTGTGCCAGCTTTGTGGCTGAGTGGTATCGTGA 58150 28 100.0 33 ............................ TGAAAGCAGGATTATTGCAACGACGCATTGCAA 58211 28 100.0 33 ............................ CAAACTTCCAGAATTCCTATGGGTTAGCAAAGA 58272 28 100.0 33 ............................ CGGTGGGGAGATTCACTCAAATCTCGCCACGGC 58333 28 100.0 33 ............................ TCAAATCTCTCCGGTGCTTTGTTGCAGTCGTTA 58394 28 100.0 33 ............................ CATTTGACGGATCAAGCACGCTCATATTTGTAT 58455 28 100.0 33 ............................ TCGTGATTTCAAGCATGCCCATGTTTTCTGAAA 58516 28 100.0 33 ............................ CACCCTCTGCATACTCTGATGCACTTGGCGTTC 58577 28 100.0 33 ............................ CAAAGAAACTCTCGACCAGATATTTGAACAGTT 58638 28 100.0 33 ............................ CGAGGTCTACTATGGCAACAAAAGGTGACATCT 58699 28 100.0 33 ............................ CCAAGCAATGAGCCACGCATCGACCAGCGTATT 58760 28 100.0 33 ............................ TAGAGCGAGAATCTGTGATAGCGTGACCTGTTC 58821 28 100.0 33 ............................ TTAAACTCACCCCAAACAACGTCACCCACTGGC 58882 28 100.0 33 ............................ TAACGCCTATGCGTTTTGGCGTCACTGTCGAAA 58943 28 100.0 33 ............................ TGTTCTCGCCATTCAGTCCTGCTGATTTAGCGA 59004 28 100.0 33 ............................ CACTAGGTCTTTTATCACTCCTGCATCGCCGCT 59065 28 100.0 33 ............................ CTTCCAAATCTCTCGCTTTCTCACGAGAGAGTC 59126 28 100.0 33 ............................ TATTTGTCCCTCATCTCATCCTGTTGATAATGG 59187 28 100.0 33 ............................ TGATTTATGACAGCTCGCAAAGAGAGTGGGTTT 59248 28 100.0 33 ............................ CGACAACGAATGTTGATGCGGTCGTCAAAGATG 59309 28 100.0 33 ............................ CCAGTCAGCTTGCTTGGGTCTGGTACACCTGCG 59370 28 100.0 33 ............................ TCAGCTTACCTTTGCGAGTTATCTTGTAGGTTG 59431 28 100.0 33 ............................ CGCAACCATTGCAGATGGCGCGTCACCTCCCAA 59492 28 100.0 33 ............................ CATGAAGTAGATGATTCGATTGCAGTTGATAAC 59553 28 100.0 34 ............................ CATGACTGATGCCATTAGTAAGCCTCCGGTAAGT 59615 28 100.0 33 ............................ TACACTGTGCGTAAGCTTGAGGATATTTGGTGA 59676 28 100.0 33 ............................ CCACGCTCATCTCTATGTCGCAAGATGTTTTAC 59737 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================== ================== 62 28 99.5 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCTGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATAGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCTAAACCAGAGGGGATTTGTGACAGCAGCTATGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //