Array 1 326296-326982 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJO01000001.1 Secundilactobacillus folii strain CRM56-3 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 326296 28 100.0 33 ............................ TTGATTGCCTTCATACTTAATGATAAGTTCGTT 326357 28 100.0 33 ............................ TTTGCGTCAGACTGGCAAGCACGTATTGACCGT 326418 28 100.0 33 ............................ TGAAAATTTTGACACATCGACAGCTTTTGGCAA 326479 28 100.0 33 ............................ TGAAAATGACACTGATACAATTCAGCGGACCAA 326540 28 100.0 33 ............................ CTGAATCGAAGTGTGCTGCACGATATCAAAAGC 326601 28 100.0 33 ............................ TACCAATTATGGCATTATCTCGATGAATGAAGC 326662 28 100.0 33 ............................ CCTTGAATCGTCCCGTACATCTTGATGAAAAAT 326723 28 96.4 33 .....T...................... CAGTGACATCCAAGCGGTGTTTATGCCTAGCAG 326784 28 100.0 33 ............................ CGATGGTGATAGCCATGCCTCAACAATCTAACA 326845 28 100.0 33 ............................ TGAATCCAGTTATCGAACTATTTTTGTCGCAGG 326906 28 96.4 21 .................A.......... CGGAACGCCTTTAATGATCTG Deletion [326955] 326955 28 85.7 0 .....TT........T....A....... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.2 32 GTATTCCCCGCACATGCGGGGGTGATCC # Left flank : CATCTCAATACTTTATGAGCACCGGTGGCTGGATCATTAAATCAAAGAATATCTATTACCATAATCATCGAACCTTCTTCCTCGTTGCTAGTGGACATTGGTACTATAAGTAATCAAAAATGACTGCATCTCTATAAGAAAATTGTATTAGTCAAAATTTCCGTCTCTAAAAACAGGATAACTTGGCAATAGAATCTAAATGAAGTTTCAATTTTCGCTTTGCTGAACGTATGATTGATTTACGAATTTTCAAATCAAGTGTAGGACTAACGACCTACCTCAGTAATGGGCTTAGCAATCGTTAAAGTTCTAGCATTATGCCTGTATTTGTTTTCTTGCTAGCGTGATGCTTAAAAAAACTACCATCTCTTTTTAGTCTAGTTAATTGTTGTCACACCCAGAATATCAAATCAGGCAAAAAAGTTTCTCTGTAAATTAAAAGTGATAAAAAATGGCAATTTTCACTTTTCAAAACAACATTATATAAGGGATTCTTTAGT # Right flank : CTATTATTTTCACCAAAGATTTGAACAATTAGTTAAAGTCATGCTTTCAAAATATAGTTCAAAACAAGAACCCCGCTAAACGTTAATTTAGCGGGGTTCTTACATGATTTATTATAAGGAGAGTACAGGATTTGAACCTGCGCGCCGGTATTAGCCGGTTCGCCGGATTTCGAGTCCGGTGCATTACCACTCTGCCAACTCTCCATAGCACACTAAATAATTATACCAAAACTGGCCAAACTTGCAACCACCCTCGCCCATTATTTAGTGTTTAGGTGTTTAAATTAAAACTCCATCAAACTAAAAAGGTCATAGTCTTTAATCTTATCACGACCATGAAGATCCTTTAGCTCAATGATAAAAGCAGTCCCAACAACAATGCCACCAAGTTCCTCTACTAACTGGATCGTTGCGCTGATTGTGCCGCCAGTCGCTAATAGATCATCCGTAACGAGCACCCGTTGACCTGGCTTAATCGCATCTTTATGCAAATACAGTGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15664-15348 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJO01000017.1 Secundilactobacillus folii strain CRM56-3 17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================================== ================================================ ================== 15663 43 100.0 48 ........................................... CCTGCATGTAACCGACTCTGGCCCAAAATCCAAGCCCAGGATTTTCGC 15572 43 97.7 48 ................................A.......... CCTGCATGTAACTGACTCTGGCCCAAAACCCAGACCCGGGATTTTTGC 15481 43 100.0 48 ........................................... GTTGCATCTAACTCAATTCGGACACAAAGCCAAGCTCGGGATTTTCGC 15390 43 95.3 0 ..........C.....................A.......... | ========== ====== ====== ====== =========================================== ================================================ ================== 4 43 98.2 48 GCTTCTTGGCTTCCGTGCCGAAACGTGTTCGGTAAGGCCGAGA # Left flank : TGGCGTCTTCCATGTTGCGAATCGCGTACATCGTATTGAATTCTCGAGAATCAGAATGGCGGTCTTCCTTGCCGTCGTTCCACCAGTAGGTTGGAATGCTTGTGATGTGAGTGTGAGCGTTCATAATGCCTGGCATCACATATTTACCCTTCATATCTACCGTTTCGTCAAATTGAACTGAACCGTCGGGCTTACCCTCACCAGTATTGACAATCTTCCCAGTTTCTGTGTCGACGACCACGTAATGGTTAGTTTCGAAATCCTGCTTGTCATGGTTGTAAATTGCTGCGTTGGTATAATTGATTTTTGTCATAATATCTTCTCCTTTGGATGTAAAGCTTGATTAACTGTAACGGACCGTCATCTGGGTTGTTTCTTAACTGTGATGTCATGCGATCCTCACCTCCTTAGTTGTTTAAAATGCAGTTTATGGCTTTTGTTGATTATTTTTTGCTGATGTTATGAATGTTGACGCTTGTTTGGGGAAGACCCGTCTTTGT # Right flank : GTTGCATCTAACTCAATTCGGACATAAAGCCAAACCCGGGCTTTCTGCCCAAATTGAGTTAGACTCCACTCTCAAACCCGCCTTTCCTCACACTCTTTACTTCCAATACGCATACTGCAACTGTCCCGCTGCTCCCGACATCGTATCCCACTTCAGACCGCCCACATCACTATTTACCAAATGGGCCTGCGCCGTCTGGAACGTTGGTGCTACCGCCGCAATACTCATCAGCCGCTTATCCGCCTGCTTCTCAAATTCAAACCGCTGCGTCGCCGTATACTTTCCCGTGTCATTTACCTTGGCCATCAACGCGTCATACTGCGGATCCTTTGTCTTCGCAAAATTAATTGAGTTTTGGCTCTGCATGCCATCCAAATAATTCTGCGCATCCGGATAGTCTGGGCCCCAGCCAACCGTCGTAATATCAAAGTCCGTCGTGAAATCACGCGAAACATGAGTTGCATGCGGTACCGAAATAATGTTGACCGTTACCCCCTTCA # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCTTGGCTTCCGTGCCGAAACGTGTTCGGTAAGGCCGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //