Array 1 136-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXS010000010.1 Erwinia amylovora strain 1598 Ea_1598_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 135 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 74 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 13 13 44.8 0 .............---------------- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 81.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : T # Questionable array : NO Score: 4.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.08, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5421-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXS010000050.1 Erwinia amylovora strain 1598 Ea_1598_contig_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 5420 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 5359 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 5298 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 5237 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 5176 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 5115 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 5054 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 4993 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 4932 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 4871 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 4810 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 4749 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 4688 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 4627 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 4566 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 4505 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 4444 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 4383 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 4322 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 4261 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 4200 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 4139 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 4078 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 4017 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 3956 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 3895 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 3834 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 3773 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 3712 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 3651 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 3590 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 3529 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 3468 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 3407 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 3346 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 3285 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 3224 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 3163 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 3102 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 3041 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 2980 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 2919 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 2858 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 2797 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 2736 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 2675 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 2614 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 2553 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 2492 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 2431 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 2370 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 2309 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 2248 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 2187 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 2126 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 2065 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 2004 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 1943 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 1882 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 1821 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 1760 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 1699 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 1638 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 1577 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 1516 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 1455 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 1394 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 1333 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 1272 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 1211 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 1150 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 1089 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 1028 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 967 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 906 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 845 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 784 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 723 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 662 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 601 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 540 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 479 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 418 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 357 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 265 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 204 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 143 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 82 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================================== ================== 88 29 99.8 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGGGGATAAACCGCAACCAGTTTCGTTAGTTGTTTCTGGGATTA # Right flank : GACCAAAGGCGACCATCAGGTAGAACTGGCCTTGCGTTCCCCGCGTGAGCAGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 192-2785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXS010000030.1 Erwinia amylovora strain 1598 Ea_1598_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 192 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 253 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 314 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 375 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 436 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 497 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 558 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 619 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 680 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 741 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 802 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 863 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 924 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 985 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 1046 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 1107 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 1168 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 1229 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 1290 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 1352 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 1413 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 1474 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 1535 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 1596 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTGGGTGATT 1657 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 1718 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 1779 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 1840 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 1901 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 1963 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 2024 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 2085 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 2146 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 2207 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 2268 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 2329 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 2390 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 2452 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 2513 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 2574 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 2635 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 2696 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 2757 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.4 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGAGTGTTCCCCGCGTATGCNNG # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12249-12577 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXS010000030.1 Erwinia amylovora strain 1598 Ea_1598_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12249 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 12309 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 12369 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 12429 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 12489 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 12550 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //