Array 1 239305-238231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVH010000003.1 Listeria booriae strain FSL L7-0729 NODE_3_length_288727_cov_20.143149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 239304 30 100.0 34 .............................. CGCTTTATACAGCGCAACCAGAACAAATTTTAGG 239240 30 100.0 37 .............................. CCCAAAATTAACAAACGACAACAAAAAAATTGACTAC 239173 30 100.0 37 .............................. ACCGCATCGGCATTGAGCGGCTTAGATATTAGCGATG 239106 30 96.7 35 T............................. TGTAGATAATGCTGTTCAAGAACAAATAGCATTAC 239041 30 100.0 36 .............................. AAATAACTGCCGTGAATCATCGTACAGCGCCATTGC 238975 30 100.0 37 .............................. GTGGATATAAGCAAGCTCAAGACGAATGATATTGTTG 238908 30 100.0 36 .............................. TAAACAGAAATAATTGTATCGACTTCCAAAAGGATG 238842 30 100.0 35 .............................. TTGATTAGTTCGGAGTATTCTGGTGACGTCGTGAT 238777 30 100.0 36 .............................. TTCAATAATTATGATAGCCAATTTAAAACGCAAGCG 238711 30 100.0 36 .............................. AAAACTGGGGAAGTCAAAACGAATGCCGTGGAAGAA 238645 30 100.0 35 .............................. GCAAGCGGCTGGACAGGTAAGAATATGTACGTGCG 238580 30 100.0 34 .............................. GAGGATATGCTGACAACAATTGACATGAAAAATA 238516 30 100.0 37 .............................. CATTAACGTCCGCTAAGATTGCCGCAATCAATACATC 238449 30 96.7 36 T............................. GTGTCTGAACAAGATGCTAATGACATTGAAGTAGCA 238383 30 100.0 36 .............................. ATGTTCCTCGGTATTTTGAATAATATCGTGAAACAA 238317 30 96.7 27 ........................A..... TAGGAGAAGGGCGCACTTATACACCCT Deletion [238261] 238260 30 76.7 0 ......CC.A.....C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 98.0 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCCGATGAGAAAACATCGAATTTCTTTTAGTAGGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATACATTGGTACTAAAGGGTTTAAGCCTGTTTTCGGAGTTTGGATTGTAAGGTTTGAGAGCGGGAATTTGGGATTTGGTTGTTGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGATCCAATTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCATGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTTTTTTGCGTTTCCCATTTGAGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCTAGAATGGTTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATATC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 90537-90837 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVH010000005.1 Listeria booriae strain FSL L7-0729 NODE_5_length_256236_cov_24.857307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 90537 36 100.0 30 .................................... ATTCTGTATCATTGCCGCCGTTCACTACTT 90603 36 97.2 31 .................T.................. GAATGAAATATCGACACAGGTCAAAGTGACC 90670 36 97.2 30 .................T.................. ATGACGTGGTTTTCGGCTCAAGTAGTACCG 90736 36 100.0 30 .................................... TGCTATCGAGGCAAAACGACTTACCAGTCT 90802 36 83.3 0 ...........................A.A..CCCG | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 95.5 30 GTTTTAGTCCTCTTCTGGTTTGAGGTACTCTAAATC # Left flank : AACTTTAATACCTCTGCCTTTCATTGCAACAGCGCCGATAAGTACCGCTGATATGATAGAAAAGCTTTGTGCCTTCGTGATTGGCTCACCTGTGAGTAGATTATAGCCTTCCATTGCGGCTAGCATGTACTCTGTTTCAAAATCGATATCCGTGTCTTCTACTTCGCGCTTAATTGTTCCATCTTTTAAGCCATCATTATAGGCAATAGTTGCTCTTGCGGATTCTTGGTCCGTCACGCCATTCTTGCTTAAAACCCAGTAACCACCCTCTAACGTCTTCATATAGTCATCAAAGTTATACGTTTTCTTTGGCTTCTTCTCTGGCACTAGATGATCCAGCCAGCCTAATTGCATTTTACTGGAATCATAGGTGTGTGTCGTGCCGTTGAACGCCTTTCCAGCGAGGATTTTGTTTGTCATCTTCTTTGTTGTGCGCTGATTTTTTCTCTTCACAGCCATTACAATTGAAAATATTATTCCTCACTTATCCACAGCAGAGG # Right flank : GCCTATTCGCTTGTAACAACATAACTATACAAGATTATTAACGGGGCTGCATCTTGACAGATTACCAAAGCATAATTATTTTTTCATAAATTAAGAGACAGCTCAGTAGCCATCTCTCAAACTCAACCAATTATCTCCCACCAATAAAATAGCTTCCTTCTTGAAAGCCCTTCATATAAATTAATACTCGTGCCTCAACCTCACATATAAATAACTCATCTAAATGTTTTTGGAAATCTTTATTTTCAAATGCCTCCAGTTTTTCTACGATATCCATCTGACGTTTTCGTAAATCTACAAACGGATCATTCAGTTGATCTTCATTCAAAGTTTGTTCTACTCGATTTAAACAAAATTCTCTAAAGTCTTTATTAAATTTCTCCAATATCCAATACCCCTTTCGATGTATATAATTGCATTATAAATATTATTGCCGATATCGGCTAAACTATTCATCACATTATATAATAAAATGTCGATAACGGCAAATATAATGAGGA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGGTTTGAGGTACTCTAAATC # Alternate repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 68257-68869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVH010000002.1 Listeria booriae strain FSL L7-0729 NODE_2_length_580028_cov_18.117851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 68257 30 100.0 35 .............................. TCTTCATATAAGACGAGGCCCCCGACGGTACTACC 68322 30 100.0 35 .............................. TCCATCCCAAACATGAGGACTCCCAACGTTTCGCA 68387 30 100.0 34 .............................. TAGTTAGCAGCTGCAACTTCCGTCAAGTTCTTTT 68451 30 100.0 36 .............................. CTCGTCATCGTCGTCTTCAATGATTGCATCACCCGC 68517 30 100.0 35 .............................. TTTTGAGTAGACAGACAGAGGTTATGGAAAATTTT 68582 30 100.0 34 .............................. TGGTAAAAGTACCTTGCTGGATAAGCTGGGAAAA 68646 30 100.0 34 .............................. AACGTTGATATAAATCATTCTTCTTTCCGCTTTT 68710 30 100.0 35 .............................. ATAGTTAAGATTGTTGTTCACTAATATTACCACCT 68775 30 100.0 36 .............................. TCACTTTTCCGCTTTCATCCAATACGCCCACTGTGT 68841 29 86.7 0 .................A..-...C..G.. | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 98.7 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTATTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGTCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTGGTTAATAAATATACAGCGGAATAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGTTGATAAATGGTGTTTGGAAAGCGAGGACCAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTATGCAAGGGATTGAGTCTGTTTTCGAAGTTCGGGTTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGATTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGAGAGTAGGCGTTGATGGGGTACCT # Right flank : TTAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGAATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGATGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATTACCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 40267-43057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVH010000014.1 Listeria booriae strain FSL L7-0729 NODE_14_length_58308_cov_25.899899, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================================================== ================== 40267 36 100.0 29 .................................... TCAAGACCCTTACGCTTACCTTGCGTCGT 40332 36 100.0 30 .................................... CCGTTGCATTTCCTGTTCGCCTATCGCCTG 40398 36 100.0 30 .................................... TATGACTATACTAATACAAGCAAGGAAGCG 40464 36 100.0 30 .................................... AAAAATTGCAGAGAAATGAGGAATGTAAAG 40530 36 100.0 30 .................................... ACGAACTATCTAGTCAAACAGCTAGCACAA 40596 36 100.0 30 .................................... TTATCTTAGCAGAAAACTGGAAAACTACAG 40662 36 100.0 30 .................................... CGTTTGACAGCATTCAAGGTGACGAGAATG 40728 36 100.0 30 .................................... CAAATGCGCTGTTCACAATGACGGATGGTA 40794 36 100.0 30 .................................... GTTTAAACATAGAAGGTAAGTTCTTTCCGG 40860 36 100.0 31 .................................... CTTGGAGAATTAGAGAATGAACAATGTATCG 40927 36 100.0 30 .................................... GAAATTGATGCTATGGAAAGTTAGGGGTGA 40993 36 100.0 30 .................................... TCATTCATTTCAAGCTCAATACCCTGTAAT 41059 36 100.0 30 .................................... TCGTTATCTAAGTCATCTACGTGTTCAGCA 41125 36 100.0 30 .................................... AACTGGCCAATCTCATACATGACTCTCGAA 41191 36 100.0 30 .................................... AAAAAATCGTGGTTCTTTCCTAGTCCTATT 41257 36 100.0 30 .................................... AATTGAATATCATTTTTACTTAGCTTCACA 41323 36 100.0 30 .................................... ATGCCTGCCTTTCCAAAAATTTAGTTTACA 41389 36 100.0 30 .................................... TACGGTTAAATGTTAATGAGAGAACTTCAC 41455 36 100.0 30 .................................... TCATGGTAGAGCAAAAGAACAAACAACCAT 41521 36 100.0 30 .................................... AAAATTCTCATGAAGGAGGGAGGGGTTAGG 41587 36 100.0 30 .................................... GAAAGCGGGTGAATAAAATGGTACAAGTGA 41653 36 100.0 30 .................................... TCAGAATTACGACGAATGGGATTACAACAA 41719 36 100.0 30 .................................... CCTGAAAGTGATGCTAAACCTGCACCTGAG 41785 36 100.0 30 .................................... ACAGAAAAGGTGAATCAACTGCACTATTAA 41851 36 100.0 30 .................................... GAAAGCGGGTGAATAAAATGGTACAAGTGA 41917 36 100.0 30 .................................... TGGGTAGTGACAAGGGCTTCCGCATTGACC 41983 36 100.0 30 .................................... TGCAAATGGTGACATTAGTTTTGATGAGCT 42049 36 100.0 30 .................................... TAATCTTCTCGCTTTTCTGTCCAAGGCACA 42115 36 100.0 30 .................................... TGAAAACGATGAACGGAATTTAGAAAACTA 42181 36 100.0 30 .................................... AGAACTCGTTGAACAGTTTGAAAACTGGGA 42247 36 100.0 30 .................................... AGCTTTCGAATGCAAAATGGCACTCTTGTT 42313 36 100.0 30 .................................... CGTATATAAGGTGAAACCGCCTAAATTTTG 42379 36 100.0 29 .................................... ATGTTTGGTATTGACAGCTTCGAAGATTT 42444 36 100.0 30 .................................... ATTTTAAGTATGAAAAGACAACTAATTTTT 42510 36 100.0 30 .................................... AAGTGTATTGTGGCTTATTACCGCCGTAGC 42576 36 100.0 30 .................................... TATGAATAGTTTTATTCACTAAAAGTGTTG 42642 36 100.0 30 .................................... AAAGGAACGTAATAGATGGCCTTCCATGGT 42708 36 100.0 30 .................................... AAGAAAACGCCGAGTACATGATGGCACTAG 42774 36 100.0 30 .................................... CAAACGTGGAGAAATATACGACACGTTAAG 42840 36 100.0 30 .................................... AAAAAGGCGGTGCCCCGATGGCTGATATCG 42906 36 100.0 79 .................................... CGGCGCAATAGCCGGGGGGCGCATTAGGCGGATTTGGGTATTAGGAAACATATATTACGTCATAGCGTATAATATGGTT 43021 36 77.8 0 ...................C...AAA..CC...CC. | G [43048] ========== ====== ====== ====== ==================================== =============================================================================== ================== 42 36 99.5 31 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATACTGGGTATGAGTATAACAAAACCAACCCTTGTGTTTGTGGAGGGGTTTAGGTCTGGTCTGAATGATATAGAATGTGCAAATGCAGAAGGAATGTTACGGGAAATGGCTAGAAGAGGTATGCATGTTATTGTACTTGATGATAATCTAGTCGGTGCCTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAACTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAGCTCTGAAGACTTTCGACAAGCGATAAATTGGTCTATAGAGGCTGTGGATAAGTCTAAGGGGAAAGTAGTGGAATTGGAGCTGCAGTCTGTGGATAACTTATGTATTTTTACATTGGTCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGT # Right flank : ATTGGCTAAAGAACAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCCACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAACTAAACGATACAGAAATGACGATTTACCACTATGTAGTCGGCAATTTAGACACGGTCATTTACATGCGGATTCGGGATTTAGCCGATGCCACCCATGTTAGCACAACGACAATTTTACGGTTTTGCCGGAAGTTTGGATGTAACGGTTTTTCTGAGTTTCGTGTGAAGCTGCAAATGTATGCGCAGAATCGGACGAAAATAAGTGTGGACATGTCGGATGAGACAACGTATATTGATTTTCTAAAACGCACGGCTCAGCCTGAATTCAAGGCGAATATTGCCCAGTCTGCGAAAATTTTACGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCCGGAATTATTGCTGAATATG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 43988-43168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVH010000006.1 Listeria booriae strain FSL L7-0729 NODE_6_length_210649_cov_23.326810, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 43987 30 100.0 36 .............................. AAGGCTAGAAAAATTTATGAAGATGCGACGAAAAGA 43921 30 100.0 34 .............................. CTCTTTCCCCAGCTTATCCAGCAAGGTACTTTTA 43857 30 100.0 35 .............................. TCTTACGCCACATCCGCGAATAGAATTAATTTAGG 43792 30 100.0 35 .............................. CTCGTTACACCAGCCTGATACAAAACCCGAGCTAT 43727 30 100.0 36 .............................. TATTCCTTCTTCCTCCTTATAAATCAATTGCCCTAT 43661 30 100.0 36 .............................. GAATTTTAGTCCATTATATTTTCGAGCTAAGATTTC 43595 30 100.0 37 .............................. TCCCTCTGCGTTTTCCATGGTAGTTACTATTGCTAAC 43528 30 100.0 36 .............................. AGAATTAACTTTTACTTCTAACGTTTCTATTTTTTC 43462 30 100.0 36 .............................. GCAATTAAATTATCTTGTTTTGTTACATCATGCTCC 43396 30 100.0 36 .............................. GTCTTCAACGGCTAAGCGAGAATACTTTCTGTTTTC 43330 30 100.0 37 .............................. GCAGGTTGCCGTTACTTGCAATTAGACGACACCTCAA 43263 30 100.0 36 .............................. GATTACGATGCATCAAATCATGTTATTGCCAGTATT 43197 30 93.3 0 A....................G........ | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTCGAAAAGCTGGGAACCATTCCAAAAAGAAGCGTTACAACATGAAATGAGCAATTTTGAAGTGCTAGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGATACTAAAGAGGTTAAGCCTGTTTTCGAAGTTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : GTCAGCGAGGCATATTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAGTATCCATTAATACTAAACAATGGATACTAACCCTCTTAATCTATTGGCCTCTTTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACGGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGACTTGCAAGGGTAACAGTTTTTGTGTCTAGTATTCTACCATTGGCATCATATGCAGTTAGTGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 48978-47236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVH010000006.1 Listeria booriae strain FSL L7-0729 NODE_6_length_210649_cov_23.326810, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 48977 30 100.0 36 .............................. CTCATCCTCCTCAATAATTTCGGTCATGCAGCCGCA 48911 30 100.0 35 .............................. ATGCCTATGTTGTGTTTCATTGCGCCATCACCTAC 48846 30 100.0 37 .............................. ATTCAGGAACTAAGACAATTAATTGAGGAGGAAGAAA 48779 30 100.0 35 .............................. CCTAAAAAGAAATATGGTAAGTTCGGCCGTCTACT 48714 30 100.0 37 .............................. CACAAATGTATATCACTTATACTCTTACGATACTTTA 48647 30 100.0 36 .............................. GCTGACACCATGACGTGCTATAACGGCGCGTATGGT 48581 30 100.0 35 .............................. TCGCTAGATAGTATTAGTGCAAGCATCATACCAGA 48516 30 100.0 36 .............................. CTGACAGCTTCGCCTTCATGAAGTCGATTGTCTCGA 48450 30 100.0 36 .............................. GACGAATTTGAGGCACTACGGCTATTCCGTGAAGGG 48384 30 100.0 36 .............................. TCTATCATCATCAAGAATAAGATACCCGTTGCGTAC 48318 30 100.0 35 .............................. GTATGTGGGTCAGTAACTACAAAGAATACACCTGT 48253 30 100.0 35 .............................. AAGTAACAAAGCATGTCTTATTTTAGTGCATCATC 48188 30 100.0 37 .............................. CCCCCAAATATTATATTATATAATGTTTTTAATAGCA 48121 30 100.0 36 .............................. TCGTCAGGAAATGCGAGATACCCGAAAGAACCCTTC 48055 30 100.0 36 .............................. GAAAACAAGGGCTTGGGAAAAGCACCTTGCTGGATA 47989 30 100.0 37 .............................. TTCGAATCCTAGCGCTTTAGCTTTAGCAATGAATTTC 47922 30 100.0 34 .............................. TACGAATTAATGACGCTGGCAATCCATACTCTGA 47858 30 100.0 35 .............................. AGACAAATATCGCTTATAACTTGGTTCGTACTATG 47793 30 100.0 37 .............................. GTCATAGCTAACATCCGTTTCCAATTTTAAAAATTCC 47726 30 100.0 36 .............................. AATCAATTAGACGCTGAAATTCGAAAACTTGGCGAA 47660 30 100.0 35 .............................. CAACTCGTTGAGAGCTTCGAGAAGGTCATTTCTAG 47595 30 100.0 36 .............................. AACCCTGATATGTAGTAAAATAATGTTAAGATAGGA 47529 30 100.0 37 .............................. AAAATTAGGATTAAAGAGGCAACAAAAAAAGGGTATG 47462 30 100.0 36 .............................. TTGATGGGGACGATGTTCTGATCGATGAGCGCGGAA 47396 30 100.0 36 .............................. AGGTCACTAAATGGTCACCAATTTTGGCGGAATTGA 47330 30 100.0 34 .............................. ATTTTTCAATAAATACAAAATCGATAGACTCAAA 47266 30 83.3 0 .................C.A....A...TC | A [47248] ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.4 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACGACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGTGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTTACCATAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCAGTGTCATAGCCGGAGATGGCGAAGAACAAAATGTTTACATAATTTCTAAAAATGCAACAACTCCACTTGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTGGTTACTTCAAAAAATGAATTACTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGTCCATAAAAAGGGATACAAATACTAAAATTACGAGAACC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //