Array 1 507824-508038 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKZ01000002.1 Cronobacter sakazakii strain cro664A1-1 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================ ================== 507824 34 97.1 28 ......................A........... CGGCCCACGGAACAGGCGTTAATGGGGA 507886 34 97.1 26 ..................C............... TGGCCCACGGAGCGGAAGTTGACTGA 507946 34 100.0 25 .................................. TGGCCACGGGACAGGCGTTGATGTC 508005 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================ ================== 4 34 98.5 27 ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACA # Left flank : AGCTGATGCTCTACCCTGCCGTACAGGCGACGCGCGAGGCCGTTGAAGCGATTGCCGAAGCGGATTTAATCGTGATTGGCCCCGGCAGTTTTTATACCAGCCTGATGCCGCTGCTGCTGCTTGACGATCTCGCCAAAGCGCTGCGCCGCACGCCTGCGCCGATGGTTTACATCGGCAATTTAGGCCGCGAGTTAAGCCCGGCCGCTGCTGCGCTCAGGCTTGAAGAGAAGCTGGCGCTGATGGAAGCGCATATCGGTAAACGCGTGGTGGATGCCGTGGTCGTTGGCCCGAAGGTGGACGTGAGCGGCGCGCAGGACAGAATCGTGATTCAGGAGCCGCTGGAAGCGAGTGATATCCCTTACCGCCACGACCGCCATCTGTTGCGCGCAGCGCTGGAAAAGGCGATTCAGGCGCTGGGGTAAGCGCTATGGGTGCAATGGGGTTACGGCGGGTGCGCTTCGCTTACCCGCCCTACGGCTCCCGCAATGGGCTTTGATGAT # Right flank : ACCACAACCCCCGTCACAACCAGAAGAACTTACGAGGCAGCGATAAACAGCTCGCGCAACTGATGAAGCTTATCGCGCAACTGCGCCGCCTCTTCAAACTCCAGGTTCTGCGCGTGTTGCACCATCTGCGCCTCAAGCTGATGAATTTTCTGCTGCAACGCTTTCGGCGTCAGCGCCAGTTCAGCGGCTTCGGCATCTGCCACGGTGCGCCCTTTTCCGCGTCCTTTCGGCTTGGTTTTCGCAATATTCTCGCCAAGCGCCAGAATATCGACCACTTTCTTATTAAGCCCCTGCGGCACAATGCCGTGCTCTTCGTTATAAGCCTGCTGTTTCTCACGACGGCGTTCGGTTTCGCCAATCGCCTTCGCCATCGACGGCGTGATTTTATCGCCGTAGAGAATCGCTTTGCCGTTCACGTTACGCGCCGCGCGGCCAATCGTCTGGATAAGCGAACGTTCGGAGCGCAGGAAGCCCTCTTTGTCGGCGTCGAGAATAGCCAC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.25, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 797984-797589 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKZ01000002.1 Cronobacter sakazakii strain cro664A1-1 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 797983 29 100.0 32 ............................. TGCCCGCGCAACGTCTGGCGGGAAAAAACATT 797922 29 100.0 32 ............................. GTAATGTTGACCTGTTTTGGGAGAGTGGAGAG 797861 29 96.6 32 ............................T GAGGCGCAGCTGGTCAACGCTGTTGTCTCGTC 797800 29 96.6 32 ............................A CCCTCAAAGCGCCGTTTTAACTCTCTGGTGTC 797739 29 100.0 32 ............................. TTCATACGCCGCACCAAAACTACTACCAACAG 797678 29 100.0 32 ............................. TGCGCAGGGTTCAAATTGGGGGGGATAACTGA 797617 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAATGTCCCGCCCCGCCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCGCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : TTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATAAATTGCCAGGTCCGATGGGTGCGCTTCGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAACTTTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 824664-824085 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKZ01000002.1 Cronobacter sakazakii strain cro664A1-1 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 824663 29 100.0 32 ............................. TGGGTCGCAGTAGAGCAAGACGCCAGCGGGGA 824602 29 100.0 32 ............................. CCGCCGCAGCCGCCGCACAATCAGCTGCTGCC 824541 29 96.6 33 .T........................... CCGCAGAGAAGCGCAATGCGGAGATTGAGAGGC 824479 29 96.6 32 .T........................... TTTTTGTTTACCGGTACTTTCTAAACGGCAAG 824418 29 96.6 32 .T........................... CCAGATAACGTTAGAGATGGTGCGCTAATGCA 824357 29 93.1 31 .T..........................A TACGCCCAGGCGTCAGACGCATACAGGCTCG 824297 29 100.0 32 ............................. AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 824236 29 96.6 32 ............T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 824175 29 96.6 32 ...................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 824114 29 82.8 0 .............C...A..A....C..T | T [824087] ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.9 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACCGTTAGT # Right flank : CCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCATCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //