Array 1 85397-88499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPA01000149.1 Methanosarcina mazei strain 3.F.A.1A.1 scaffold3_1_size96433-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 85397 37 100.0 34 ..................................... ATAATTGCATTATAAATAACAGACGGTGTATCTA 85468 37 100.0 36 ..................................... TCTTCCCTGCTTAGAGCATAGAAAGGGACCTTAGTA 85541 37 100.0 35 ..................................... CTATTTCACTCCTGACGTAGACACCCATTCAAGAG 85613 37 100.0 34 ..................................... CAAACTTTTCGCCAATCGCCATATGAAGGCCAGT 85684 37 100.0 35 ..................................... GATGTGCCCTTGTTTGCGCTGTAGGTGATTGACCC 85756 37 100.0 38 ..................................... TCAGTTGATTCAGTTTCGTGGCTTCCTGCGGTTCTTCC 85831 37 100.0 34 ..................................... CTACAGGGACCGTCGAGACAGTACCGGATATTTC 85902 37 100.0 34 ..................................... TTATTAATGAGCATCGTCTAGTTCTATTATTATT 85973 37 100.0 35 ..................................... ACACTAATTCTGATAATACGCGTGTATATATGGGG 86045 37 100.0 35 ..................................... ATTGTCAAACCGGTAGCTGCTGAAATATCGGAATT 86117 37 100.0 36 ..................................... CCCACTTAATCCACTCCATGAAAATGAAGCACTTGA 86190 37 100.0 37 ..................................... AACAGTCCACTTTTGATAAGGTCGGTGACGGTTTTAA 86264 37 100.0 36 ..................................... AGATTGTATCTTTAAATTCTGCAAAGGCTTTCTCAA 86337 37 100.0 35 ..................................... CCCACTTCATAAAAAACCGTATTCAATTCATCCAT 86409 37 100.0 37 ..................................... TCTCCTCGTATGATGTCGAGTTGCCCGAAGGAGGCAG 86483 37 100.0 36 ..................................... CGTATTACAGTGTATTACTTGAGGGGATGAAAATAA 86556 37 100.0 35 ..................................... CTATGTTCAAAAACAGCAACAGGAGAATTAAAAAA 86628 37 100.0 37 ..................................... CAAACGTGATAAGTTTGGTGAATTCCAAAAGGTTAAC 86702 37 100.0 35 ..................................... TGCCAGATAGCTCCTGCGGAGCATGGCAGATAACT 86774 37 100.0 34 ..................................... CAATGTTGTTTCAGGGTTTCACCCCGAGCTGAGG 86845 37 100.0 36 ..................................... TATAGTCTCCCGCGTTGTATGTGGTCATGTTAGAGC 86918 37 100.0 35 ..................................... ACCGGGATATGTGCGCTCAGGCTATCCTAGTTGGA 86990 37 100.0 38 ..................................... AATCCACAACATGCCGCAACTCACCAAAATCTCCATCT 87065 37 100.0 34 ..................................... TGTGGAAGAGAAAAAGGGTTTAGCCGTTTTTATG 87136 37 100.0 37 ..................................... AGATTGCATACCGTGGCAAGGACGAGGAAGAAGCCCT 87210 37 100.0 35 ..................................... CAAAGTGCTGTGTAATATTAATAGGTTCGAAGCCT 87282 37 100.0 36 ..................................... TTGTAAGGTCTACAGTCAAAACCTGTAGGTACTCCG 87355 37 100.0 34 ..................................... TTAAGTTTTATATACTTGGTATAGTATGCACAAA 87426 37 100.0 35 ..................................... ATTGAACGTGCTGAGGAGGCTGAAAAACGTGGAAC 87498 37 100.0 34 ..................................... ACATTCCCATAACTGTAGCACCGAGCCAGATTGA 87569 37 100.0 35 ..................................... GGGGATATCGTTGCAGTTTCGTTTAAGTCATCTAC 87641 37 100.0 34 ..................................... TTAATATCATATTCCTTTCAGCATCGGTATCTTT 87712 37 100.0 38 ..................................... TATTAGTTCTTTCTGTGACCGCACATATTAGGCTAATT 87787 37 100.0 46 ..................................... ACCATCCGTTACATCTCTTTGGTAATGTGAATTCTTCTCCACACTG 87870 37 100.0 36 ..................................... TGTATACAACATGCCAACTATGCATATCTTTAGATC 87943 37 100.0 37 ..................................... GTTCCTCTGTTCTATCTACATACTCAACTATGATTTT 88017 37 100.0 40 ..................................... AAATTGACATCTGCAATAATCCGAGCAGGTTTCTTTTCGG 88094 37 100.0 38 ..................................... TACAAAATATTTAGTGTAAAATTCCCATGAAATTTTTC 88169 37 100.0 36 ..................................... TCTCTGTCCGTAGGATCAAGCACAGAGCTTATGAGC 88242 37 100.0 37 ..................................... ATTCTCGTAGTAAGAGTCTACGAGATTGAGATAAGCG 88316 37 100.0 38 ..................................... ACTGAATCCCTGATACTTTTGAGCTCTTTTTTCATGGT 88391 37 100.0 35 ..................................... ATCTGTAGTCATTTTAGATATACCTCGCAAACATT 88463 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 43 37 100.0 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTCATTTTTTGTGACACTTATTGTTATATTGTCATAATTCGTGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 11598-15206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPA01000140.1 Methanosarcina mazei strain 3.F.A.1A.1 scaffold44_1_size25940-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 11598 37 100.0 37 ..................................... ACGAATTCTAGTCTCTTTGTCTCTGTTTCTAAATATG 11672 37 100.0 36 ..................................... ATAAGTCTAGTGTGCTCTACAGCATCCCTACTAAAC 11745 37 100.0 36 ..................................... ATATGGTAGAAGGAAAGGTTAGCAAGGAAGAAATAG 11818 37 100.0 36 ..................................... TGAGAGGATCTATACCAAGATAGGACAGTGACTTAA 11891 37 100.0 35 ..................................... AATACTAATTGTTTTTCGATTGGATTCCCCGACAG 11963 37 100.0 36 ..................................... CATAATTTCCGTACACCATTTTACCCGATAGAATCT 12036 37 100.0 35 ..................................... TGATACAGCAGGGTGCATTAACAGCACTTGAATAT 12108 37 100.0 36 ..................................... TTTTGCAAAGTAGGCTGTCTTAAAAGAAGCACCTTG 12181 37 100.0 36 ..................................... TAGACATCCTGAAGACAGCCTAAGTCCGGTCTTGCG 12254 37 100.0 38 ..................................... CAAGTATAGCCGCCCATCTCGTTTTCTTAAACGCGAAT 12329 37 100.0 36 ..................................... TAGTCTATAGAATATGACTTAACTCAAGCACATAGG 12402 37 100.0 37 ..................................... TTGATCCTGCAATCTATATTACATCCTGACATCTCAA 12476 37 100.0 36 ..................................... ATTTTAACTTCTTTGCATTCTATTTTTTTCATAATC 12549 37 100.0 36 ..................................... CCAATTCCATTCTCTACACGATCCATGTTTTCAGGT 12622 37 100.0 34 ..................................... TTTAGAATTACGCTTTAGCTGTATCCGGGAATTT 12693 37 100.0 34 ..................................... TTTGCATTTGGGATGGCTCCTTAATGTTTTTATC 12764 37 100.0 37 ..................................... GTCTGGAATTTTTCATACCAGATACCTTCTTTTGCGC 12838 37 100.0 35 ..................................... TTAGATACCCTTCGAGAATATGCCCCACAATTTAA 12910 37 100.0 38 ..................................... TTTAGAAGGAGTGTACGGACCGGGGATCTGGGCGATAG 12985 37 100.0 34 ..................................... ATAGAAAGGTTTTCAAGGGGATATGATAGTTTTG 13056 37 100.0 35 ..................................... TTATCCCGATGGATTCCGCTCTTGAGAGAGTTATT 13128 37 100.0 35 ..................................... ATTTTGAGAAGTGAATTTGGAGTAGTTGTATCGGT 13200 37 100.0 35 ..................................... AGAGGCATGTTGTAGGCTGGCACTCCGTCGGCTGC 13272 37 100.0 37 ..................................... AGGGATTCCGCGATTGATTCAAGTGCTTCCAATAATC 13346 37 100.0 34 ..................................... GTGCGAGTACACACTCGCCACAATGGAATTTTTC 13417 37 100.0 36 ..................................... TTCATTGCCTTCATGTTCTTTCCAGAATTGCTATTG 13490 37 100.0 40 ..................................... AAAAGTCAGTCACGGCCAGCCTATGCGCTAAGACTTCACT 13567 37 100.0 35 ..................................... CTTTTTTTGTGCTCTTCTTTGCAACTTCATATACT 13639 37 100.0 34 ..................................... TATCGCTTCCTGTGAGACATGGAAAAAGCGAACT 13710 37 100.0 37 ..................................... GAAAATATGTCCCGATTTTTGGGACAGAAAGCACGAT 13784 37 100.0 35 ..................................... TTGTCATCCGTACCTTCCTTCAAATGCGAGTTATA 13856 37 100.0 42 ..................................... GTCCGATAATCCCATTCTCGGAAGCTGCAACCGCCCATGAAG 13935 37 100.0 36 ..................................... TACATATACAATCCACACACAGGACACATTTTTTTA 14008 37 100.0 34 ..................................... CGAATGTCCTTTCTGTGGGGAAACTTCGTTTTTC 14079 37 100.0 38 ..................................... GTGTTTACCTGCCAGACAGATCTTTTATTCCTTTTCTC 14154 37 100.0 35 ..................................... TACTGTTCGGCGGTTCTTCGCATTGTTGCGTCAAT 14226 37 100.0 35 ..................................... AGAAATTCAATACCTCCGCACAAGATCAGATATTG 14298 37 100.0 36 ..................................... ACCGCTATTGTACCGGTGGCAGGAGTCCAAGTCTTG 14371 37 100.0 35 ..................................... TTATCCTACCAAACATATTAATATGAGAGGGGAGG 14443 37 100.0 35 ..................................... CACATGGCTTTCCCTCTACCAACAAAGACCAAGTG 14515 37 100.0 35 ..................................... ATGCAAGCCATCCGATAGCCAATATCGCTACATAT 14587 37 100.0 33 ..................................... ACTGATTCACCAGGCTTTGAACCTTCCCTATAT 14657 37 100.0 37 ..................................... AGCTTTTTCTTCAATGAAAGAAGTTCAGATTCAACTT 14731 37 100.0 35 ..................................... ATTTTCACATTTGTTTCCCCGGTTCCCTTCCCACC 14803 37 100.0 37 ..................................... TTTAGCCCGCATTTGAAGCAGGTTTGAAGTTCAGAGG 14877 37 100.0 36 ..................................... CTGAGTCAATAAAAAATGTCATGTCAGAAAAATTAA 14950 37 100.0 37 ..................................... ATGAAAAAGTTATAATCCGCGACCTGGTTGTATCCGG 15024 37 100.0 36 ..................................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 15097 37 81.1 34 GG...A...T.GCT....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA A [15102] 15169 37 81.1 0 .G...A...T.GCT......................G | A [15176] ========== ====== ====== ====== ===================================== ========================================== ================== 50 37 99.2 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAGGCTAACCTGATTGACCTTGAGAGTTCAGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGGACCTTCTGTATTATTTATAATGGCAAGGTTATCAGTCATCATCCAATCAGTAATACAAGATTTGAAAACATTATGAGAAAAATAATTCAATAGTCCATACCAGATTTCAAAACCCTTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGGATATTTCCGGCCTTTTCTGGCCATATAACGGAAATTTTTGCCCT # Right flank : GTTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAAAACCAGACTCTAGCCAAAATACAACTGAAACTATACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGGTCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACCGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 1221-2986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPA01000094.1 Methanosarcina mazei strain 3.F.A.1A.1 scaffold47_1_size46988-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1221 37 100.0 34 ..................................... CTACTTTATTTCTGGCATGATTCAGTTCTTTTTC 1292 37 100.0 38 ..................................... TTCCGTATGAAGGCTTTTCCACGGCACTTGCCGGAAGT 1367 37 100.0 34 ..................................... ATATTGGTGCATGTTTTAGCTGCATCTGTGACTT 1438 37 100.0 33 ..................................... TACCACCTTGATATTCATTATGGGCTTTTTCTA 1508 37 100.0 36 ..................................... CTCATAATGGGAGTTCGGGGGATTGGGACGACGACA 1581 37 100.0 34 ..................................... ATACACGTAATCAAAGTTTGAAACAAGTTTTTAA 1652 37 100.0 35 ..................................... AATATGAAATTTCACCATCTGCAAAAGGGTTAATT 1724 37 100.0 35 ..................................... TAGAAGTTCGGGTATCGGCGGCGGTATTACTGGAA 1796 37 100.0 35 ..................................... TACTATTAAACCAGTATTTACTTGCATAATCTAAG 1868 37 100.0 35 ..................................... CATAAAAGGACATCGGGCAAAACGTACAGAAAGGA 1940 37 100.0 34 ..................................... TTTTGTCTTCCGTCTTGCTCCATTTCATTTCCTG 2011 37 100.0 36 ..................................... TTGCTCAATCTTCTCCCTCCACAATCCATATCCACG 2084 37 100.0 37 ..................................... CACAACACTTGCAGGTTCAGAACGTCACTGCTGCCGC 2158 37 100.0 35 ..................................... CGTCGCAGGAGAAATACGAAAAGCAATTGAAAGTA 2230 37 100.0 36 ..................................... TAAAAGTCTGGAATGTTATTATTATCCAGAGTAAGA 2303 37 100.0 34 ..................................... CCGGAATGACGGAAGATCGGCAATGTGGATGTAA 2374 37 100.0 35 ..................................... AGGGTTTTAGAGGTCATTTTCACACCTCTACAAAT 2446 37 100.0 35 ..................................... TCTCGGATAGTCGCGCTTTCTGCTTCTTCTCTGTT 2518 37 100.0 33 ..................................... TCCTCATCCCTTGCTTGTCCTATTTCATCAATG 2588 37 100.0 36 ..................................... TTTCCTAATTTGAATTTTAGAAATGGATTTGTATTT 2661 37 94.6 35 .....C............C.................. CACTATACAGAAACTTGCAGAAATTACACGATACA 2733 37 94.6 35 .....C............C.................. GCAAATTGATAGCAACAGCTAAAATCTATAAAGAT 2805 37 94.6 37 .....C............C.................. GCCAATAGTTCTCTTAGGTGATAGCCCTTACATACGT 2879 37 94.6 34 .....C............C.................. TATAAATCGCATCACATCAAGATCACTGCAAGGA 2950 37 94.6 0 .....C............C.................. | ========== ====== ====== ====== ===================================== ====================================== ================== 25 37 98.9 35 ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : GGAGAGGAATTGCAGGGATGAGGGATAAACTGATCCACAACTATTTCGGTGTGGATTCCGGTGCCGTATGGGATACCGTAAAAGAGGATATTCCTGCTCTCAAAGAAGAAATCACTAAAATTATTCAGGACCTTAATGAGAACGTTTAGTTTTTTTAATTTTGTCAACCGATCTATTATTATGAGTACAAGAAAAACATTCGTGAAGTTCCAGAATATTGCCCCTCTTTCTGATCCTGCCTAGGGACGGAAAATCCCTCCTCGCTCCCAATATAAAACCATATTTCACGGTAGATCTGAAAAAGAGTATGTACAAATATACAAATCAAAAACAAAAGTTTAATAAAAAGAAAATCATATGTCCATATGTTTCTAAATTACTAAAAACCCTGTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTCCCAGCAAGAATTTTAGCCTCGAAAAAGGGCACATTTCCGGCCTTTTCTGGTCAAATAACGGAAATTTTTGCCCT # Right flank : CCTCATCTTTGAGTAAAATTTTTATTTAATTATTATTTTTTAGCTATTTTTATATTTATTTGATTTTAAACTATTGTAGTCAGCATTAAAATAAATTTTCATAATATTGACTAAATTTAGAAACTTTTATATGTAATCGAATATTTTTTAAGAGATAAATTATTTTAAAGGAGCATTTCCGATAATGAATGATGATGAACTTCAACTCATATTCTTGCTCCATGATCTTGGCATATTTTTTAAGAGAACAGGCTTGCCCCCCTTAGAAAAATTCAGTAAATTGACGGAAAATGAGATAGGTAATGGAGGGTCACACTCAATATGGAGTGCTTCATTTGCTGAAGAGCTTGGTCTGAGCCAGGATATCCAGAATATAATACTATACCACCATAATTACGATTCTTTGGAAGGAGAGAATGCAAGAATCGCAAGTGTACTTGGTCAAGCTGCTGAATTCTTCTCAGGAGAAGAAGAGTTGGGGCCGGTAAACCTTCTATCTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 2 10678-11010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPA01000094.1 Methanosarcina mazei strain 3.F.A.1A.1 scaffold47_1_size46988-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 10678 37 75.7 39 .CT.CA..ACG.......GC................. TTTGATTTAGGGGCAAGGATCCATTGTCTGTTCGCTCGT 10754 37 100.0 35 ..................................... CATATTGAAAAAATGAGAGAGGATCGGATTTTATT 10826 37 70.3 37 A.TCGTG..C.AGA....T.................. AGTGAAATGGGGTTTTTCAGTTTGAAGGTTTTTCCTT 10900 37 91.9 37 .........C..................A.......T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC 10974 37 59.5 0 A.TCGAT.AC.AGA....T........A.....T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 79.5 37 GTCGAGAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Left flank : TATTACTTTATCATTGTCAAAATCAGGAAAAATTCTACAAGGTTATTGATCTTAAAGATCCTCGTGAAGTAAGTTATGAATCTGAGACTTATGTAATTGCTCCTAAAACTATTCCAGAAGATCTTAACTTGGATGGCGGGAAAAAGTTAATCCTGCATATTGTCATATCTGCTCGCCATGTTGAAAACTTTCGGTTACATGATGATCATTTTAATGCAACCAATGTTGCTATAGTTTATAATGTAGACCTAGAGCCTAAAGATGACTGGTTACCTTACGTTCAGGAAATAGTTGAAATAGCAAAACCATTGATCCATCGTTATGAAGATGTTGATGTTTGTCTAATTTGCCCTTCAGTCGTAGCTTTTGCACTTGGAATGGCTTTCTCAAGAAAAGGATCTTTAAAAGTCTGTCATTATTTTAGTGATGGAAAATATAGGCCTGTATTTCAACTCTCCGAGATAGAAGGTCACCCCCCTTTCAGTTAACTGTGAGCTAGA # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAAAAAGCAGCCGATGCGAATCTAATTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTACAATCAATGAATATTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:3, 4:-0.03, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //