Array 1 227-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820177.1 Prevotella sp. HMSC077E08 Scaffold184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 226 28 100.0 37 ............................ TTTCGACAATGAGGTTTCTAAGTTCAAATCGAACTTG 161 28 100.0 38 ............................ TCTGAATATTCAGAATGCGACGATAGCTGCTTTAGCAG 95 28 100.0 39 ............................ TGGCTATTTAGGCAGGAAGAAAGGATCTGAACGCTTTAG 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 4 28 100.0 38 TTATAATTGAACCTTATTGGAATTGAAA # Left flank : | # Right flank : A # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTATAATTGAACCTTATTGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 1-291 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820157.1 Prevotella sp. HMSC077E08 Scaffold111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1 29 96.7 36 -............................. AAGGGTTCAGTTGAGTTGTCGCAAGTTGAGAGGAAT 66 30 100.0 37 .............................. TGACAGAGTATCACACACGGATTGAACGCAAACCCTA 133 30 100.0 34 .............................. ACGAGATTGTACATGACAACCAGGGCGGACATAA 197 30 100.0 35 .............................. GAACATCTCGGCAACTGGGGTTCGATTCCCCTCCG 262 30 96.7 0 .............................N | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.7 36 GTTATAATTGAACCTTATTGGAATTGAAAT # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATTGAACCTTATTGGAATTGAAATTGCGTAGAGCGTGTAATTCCCCTCTCCGCCACCGGTTATAATTGAACCTTATTGGAATTGAAATTGCCGTGAAGCTGCGGGCGATAAAGCGTAAAAAGGTTATAATTGAACCTTATTGGAATTGAAATCTATGTTGACGGATTCCAGTGGAGCTTCCGCTATCGTTATAATTGAACCTTATTGGAATTGAAATGCTAAGGTTGCGCACCATCGCAGAGCTTCGATGAAGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTGAACCTTATT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATTGAACCTTATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 389-676 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820157.1 Prevotella sp. HMSC077E08 Scaffold111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 389 30 93.3 34 NN............................ TGCGTAGAGCGTGTAATTCCCCTCTCCGCCACCG 453 30 100.0 34 .............................. TGCCGTGAAGCTGCGGGCGATAAAGCGTAAAAAG 517 30 100.0 35 .............................. CTATGTTGACGGATTCCAGTGGAGCTTCCGCTATC 582 30 100.0 35 .............................. GCTAAGGTTGCGCACCATCGCAGAGCTTCGATGAA 647 30 93.3 0 ............................NN | ========== ====== ====== ====== ============================== =================================== ================== 5 30 97.3 35 GTTATAATTGAACCTTATTGGAATTGAAAT # Left flank : TTATAATTGAACCTTATTGGAATTGAAATAAGGGTTCAGTTGAGTTGTCGCAAGTTGAGAGGAATGTTATAATTGAACCTTATTGGAATTGAAATTGACAGAGTATCACACACGGATTGAACGCAAACCCTAGTTATAATTGAACCTTATTGGAATTGAAATACGAGATTGTACATGACAACCAGGGCGGACATAAGTTATAATTGAACCTTATTGGAATTGAAATGAACATCTCGGCAACTGGGGTTCGATTCCCCTCCGGTTATAATTGAACCTTATTGGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTGAACCTTATTGGAATTGAAATGAATTAATCTGTCCTAACATCATATAAGGGTTCAAGTTATAATTGAACCTTATTGGAATTGAAATTGCTCTGATGTCTGATAGAACATCGTCAGGTATTAGTTATAATTGAACCTTATTGGAATTGAAATTCGACGGTTTGATAGAGAGTGTGAACAAGTCAAAGGGTTATAATTGAACCTTATTGGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGAACCTTATTGGAATTGAAATTAACATGACAACGAAAATTCAAGTAAACAGCTTGAGTTATAATTGAACCTTAT # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATTGAACCTTATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 837-997 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820157.1 Prevotella sp. HMSC077E08 Scaffold111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 837 30 100.0 35 .............................. TGCTCTGATGTCTGATAGAACATCGTCAGGTATTA 902 30 100.0 36 .............................. TCGACGGTTTGATAGAGAGTGTGAACAAGTCAAAGG 968 30 96.7 0 .............................N | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTATAATTGAACCTTATTGGAATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATTGAACCTTATTGGAATTGAAATTGCGTAGAGCGTGTAATTCCCCTCTCCGCCACCGGTTATAATTGAACCTTATTGGAATTGAAATTGCCGTGAAGCTGCGGGCGATAAAGCGTAAAAAGGTTATAATTGAACCTTATTGGAATTGAAATCTATGTTGACGGATTCCAGTGGAGCTTCCGCTATCGTTATAATTGAACCTTATTGGAATTGAAATGCTAAGGTTGCGCACCATCGCAGAGCTTCGATGAAGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTGAACCTTATTGGAATTGAAATGAATTAATCTGTCCTAACATCATATAAGGGTTCAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGAACCTTATTGGAATTGAAATTAACATGACAACGAAAATTCAAGTAAACAGCTTGAGTTATAATTGAACCTTATTGGAATTGAAATAACAGTGGAACACCGTTTACACAGACAAACAGCCCGTTATAATTGAACCTTATTGGAATTGAAATAAAGTACAAAAAAGGGGCGAGAAACAAGAATGTTTGTTATAATTGAACCTTATTGGAATTGAAATTAGGCTACGACTTTATGGCGGTGGCGAACAATGACGTTATAATTGAACCTTATTGGAATTGAAATTCTTTAACAACGTCTGTATCGCCTAACTCTTTTAGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATTGAACCTTATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 4 1158-1446 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820157.1 Prevotella sp. HMSC077E08 Scaffold111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 1158 30 100.0 35 .............................. AACAGTGGAACACCGTTTACACAGACAAACAGCCC 1223 30 100.0 35 .............................. AAAGTACAAAAAAGGGGCGAGAAACAAGAATGTTT 1288 30 100.0 35 .............................. TAGGCTACGACTTTATGGCGGTGGCGAACAATGAC 1353 30 100.0 34 .............................. TCTTTAACAACGTCTGTATCGCCTAACTCTTTTA 1417 30 93.3 0 ............................NN | ========== ====== ====== ====== ============================== =================================== ================== 5 30 98.7 35 GTTATAATTGAACCTTATTGGAATTGAAAT # Left flank : ACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTGAACCTTATTGGAATTGAAATGAATTAATCTGTCCTAACATCATATAAGGGTTCAAGTTATAATTGAACCTTATTGGAATTGAAATTGCTCTGATGTCTGATAGAACATCGTCAGGTATTAGTTATAATTGAACCTTATTGGAATTGAAATTCGACGGTTTGATAGAGAGTGTGAACAAGTCAAAGGGTTATAATTGAACCTTATTGGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGAACCTTATTGGAATTGAAATTAACATGACAACGAAAATTCAAGTAAACAGCTTGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAATTGAACCTTATTGGAATTGAAATATGGTCGGCGTGGTCGGTGTGATTGTAGCCTTCTAGTTATAATTGAACCTTATTGGAATTGAAATTGCGGACGTGAAGTCCGCAGGAGTCGTTTACCTTTGTTATAATTGAACCTTATTGGAATTGAAATGAATAACAAACGGCTGGACGGAGTATCCTTCACGCTGTTATAATTGAACCTTATTGGAATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTATAATTGAACCTTATTGGAATTGAAATAGAACAGCGTCCAACTCCTTACGGACAATATCCAGGTTATAATTG # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATTGAACCTTATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 5 1609-1769 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820157.1 Prevotella sp. HMSC077E08 Scaffold111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1609 30 100.0 35 .............................. TGCGGACGTGAAGTCCGCAGGAGTCGTTTACCTTT 1674 30 100.0 36 .............................. GAATAACAAACGGCTGGACGGAGTATCCTTCACGCT 1740 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTATAATTGAACCTTATTGGAATTGAAAT # Left flank : ATTGGAATTGAAATTAACATGACAACGAAAATTCAAGTAAACAGCTTGAGTTATAATTGAACCTTATTGGAATTGAAATAACAGTGGAACACCGTTTACACAGACAAACAGCCCGTTATAATTGAACCTTATTGGAATTGAAATAAAGTACAAAAAAGGGGCGAGAAACAAGAATGTTTGTTATAATTGAACCTTATTGGAATTGAAATTAGGCTACGACTTTATGGCGGTGGCGAACAATGACGTTATAATTGAACCTTATTGGAATTGAAATTCTTTAACAACGTCTGTATCGCCTAACTCTTTTAGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAATTGAACCTTATTGGAATTGAAATATGGTCGGCGTGGTCGGTGTGATTGTAGCCTTCTA # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTATAATTGAACCTTATTGGAATTGAAATAGAACAGCGTCCAACTCCTTACGGACAATATCCAGGTTATAATTGAACCTTATTGGAATTGAAATTGCTTAACAAGACTATTAATCTCAGCCTCATTCTTGTTATAATTGAACCTTATTGGAATTGAAATTTAGAAAATTATAATTAAAAATTTAGTATAAAACTGTTATAATTGAACCTTATTGGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAATTGAACCTTATTGGAATTGAAATCTGCGTTGATACCAGTCAAGCATAAAGGAACCTTTCTCGTTATAA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATTGAACCTTATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 6 1871-2094 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820157.1 Prevotella sp. HMSC077E08 Scaffold111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1871 29 100.0 36 ............................. TAGAACAGCGTCCAACTCCTTACGGACAATATCCAG 1936 29 100.0 36 ............................. TTGCTTAACAAGACTATTAATCTCAGCCTCATTCTT 2001 29 100.0 36 ............................. TTTAGAAAATTATAATTAAAAATTTAGTATAAAACT 2066 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 100.0 36 GTTATAATTGAACCTTATTGGAATTGAAA # Left flank : TGGAATTGAAATTCTTTAACAACGTCTGTATCGCCTAACTCTTTTAGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAATTGAACCTTATTGGAATTGAAATATGGTCGGCGTGGTCGGTGTGATTGTAGCCTTCTAGTTATAATTGAACCTTATTGGAATTGAAATTGCGGACGTGAAGTCCGCAGGAGTCGTTTACCTTTGTTATAATTGAACCTTATTGGAATTGAAATGAATAACAAACGGCTGGACGGAGTATCCTTCACGCTGTTATAATTGAACCTTATTGGAATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAATTGAACCTTATTGGAATTGAAATCTGCGTTGATACCAGTCAAGCATAAAGGAACCTTTCTCGTTATAATTGAACCTTATTGGAATTGAAATTATACCCACTCGTTGTAGTAAGACTTTCCTCTAAGTTATAATTGAACCTTATTGGAATTGAAATAAATAGCCCGGAGATGTCTGCAGGTAGAACCTGAGTTATAATTGAACCTTATTGGAATTGAAATCCTTTATAATGACTATGTTGCACGCTGGGGCTACGTTATAATTGAACCTTATTGGAATTGAAATACATTATGCGGCTGTGGGTGGCTTCGGACGAAAGGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATTGAACCTTATTGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 7 2194-2483 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820157.1 Prevotella sp. HMSC077E08 Scaffold111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2194 30 96.7 38 N............................. CTGCGTTGATACCAGTCAAGCATAAAGGAACCTTTCTC 2262 30 100.0 34 .............................. TATACCCACTCGTTGTAGTAAGACTTTCCTCTAA 2326 30 100.0 34 .............................. AAATAGCCCGGAGATGTCTGCAGGTAGAACCTGA 2390 30 100.0 34 .............................. CCTTTATAATGACTATGTTGCACGCTGGGGCTAC 2454 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 99.3 35 GTTATAATTGAACCTTATTGGAATTGAAAT # Left flank : GAATTGAAATGAATAACAAACGGCTGGACGGAGTATCCTTCACGCTGTTATAATTGAACCTTATTGGAATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTATAATTGAACCTTATTGGAATTGAAATAGAACAGCGTCCAACTCCTTACGGACAATATCCAGGTTATAATTGAACCTTATTGGAATTGAAATTGCTTAACAAGACTATTAATCTCAGCCTCATTCTTGTTATAATTGAACCTTATTGGAATTGAAATTTAGAAAATTATAATTAAAAATTTAGTATAAAACTGTTATAATTGAACCTTATTGGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TACATTATGCGGCTGTGGGTGGCTTCGGACGAAAGGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGAACCTTATTGGAATTGAAATCATTTTGTGAGCATGTAAACCGTGTGCTCTGTATTTGTTATAATTGAACCTTATTGGAATTGAAATTTTATGCGCTTACGTTACAACGTAACGGGGTCGCGTTATAATTGAACCTTATTGGAATTGAAATTGATGATCATACACCGTCTATGGTGGTAAGCCCTTGTTATAATTGAACCTTATTGGAATTGAAATACCCTATTAACAACAAAACACCGCCTCTCCCTAAGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATTGAACCTTATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 8 2645-2870 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820157.1 Prevotella sp. HMSC077E08 Scaffold111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2645 31 96.8 35 N.............................. CATTTTGTGAGCATGTAAACCGTGTGCTCTGTATT 2711 31 100.0 33 ............................... TTTATGCGCTTACGTTACAACGTAACGGGGTCG 2775 31 96.8 34 C.............................. TGATGATCATACACCGTCTATGGTGGTAAGCCCT 2840 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 98.4 34 TGTTATAATTGAACCTTATTGGAATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAATTGAACCTTATTGGAATTGAAATCTGCGTTGATACCAGTCAAGCATAAAGGAACCTTTCTCGTTATAATTGAACCTTATTGGAATTGAAATTATACCCACTCGTTGTAGTAAGACTTTCCTCTAAGTTATAATTGAACCTTATTGGAATTGAAATAAATAGCCCGGAGATGTCTGCAGGTAGAACCTGAGTTATAATTGAACCTTATTGGAATTGAAATCCTTTATAATGACTATGTTGCACGCTGGGGCTACGTTATAATTGAACCTTATTGGAATTGAAATACATTATGCGGCTGTGGGTGGCTTCGGACGAAAGGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TACCCTATTAACAACAAAACACCGCCTCTCCCTAAGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGAACCTTATTGGAATTGAAATTGGCAATACCGGCAGCAAGTGGGGCAAGAACCTGGTTGTTATAATTGAACCTTATTGGAATTGAAATCGTGCATAGGACCACGCAACCCTACAACGGCGAGTGTTATAATTGAACCTTATTGGAATTGAAATTCTATTTGTAAGTGGAAAATTTGTAAGACACCCTGGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGAA # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTATAATTGAACCTTATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 9 3033-3194 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820157.1 Prevotella sp. HMSC077E08 Scaffold111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3033 30 100.0 37 .............................. TGGCAATACCGGCAGCAAGTGGGGCAAGAACCTGGTT 3100 30 100.0 35 .............................. CGTGCATAGGACCACGCAACCCTACAACGGCGAGT 3165 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 36 GTTATAATTGAACCTTATTGGAATTGAAAT # Left flank : TATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGAACCTTATTGGAATTGAAATCATTTTGTGAGCATGTAAACCGTGTGCTCTGTATTTGTTATAATTGAACCTTATTGGAATTGAAATTTTATGCGCTTACGTTACAACGTAACGGGGTCGCGTTATAATTGAACCTTATTGGAATTGAAATTGATGATCATACACCGTCTATGGTGGTAAGCCCTTGTTATAATTGAACCTTATTGGAATTGAAATACCCTATTAACAACAAAACACCGCCTCTCCCTAAGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTCTATTTGTAAGTGGAAAATTTGTAAGACACCCTGGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGAACCTTATTGGAATTGAAATCCCGATAATCTTAATTAATAACGCTTAAAAGTATGTATGTTATAATTGAACCTTATTGGAATTGAAATGCCTGCTGCTGTCCCTGTGGCATGGTCATCAACACAGTTATAATTGAACCTTATTGGAATTGAAATTGCTTAGAGATCTTTTACGGTGTTAAACATTTCACGTTATAATTGAACCTTATTGGAATTGAAATAATAGCCTGCACAGAGTGTAGCTACAAAAGACACGTTATAATTGAACCTTATTGGAATTGAAATCAGGAAAGGGGTGATATGTCTTTGTCTTATCTGATGTTATAAT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATTGAACCTTATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 10 3358-3715 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820157.1 Prevotella sp. HMSC077E08 Scaffold111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3358 30 100.0 38 .............................. CCCGATAATCTTAATTAATAACGCTTAAAAGTATGTAT 3426 30 100.0 36 .............................. GCCTGCTGCTGTCCCTGTGGCATGGTCATCAACACA 3492 30 100.0 35 .............................. TGCTTAGAGATCTTTTACGGTGTTAAACATTTCAC 3557 30 100.0 34 .............................. AATAGCCTGCACAGAGTGTAGCTACAAAAGACAC 3621 30 100.0 35 .............................. CAGGAAAGGGGTGATATGTCTTTGTCTTATCTGAT 3686 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 36 GTTATAATTGAACCTTATTGGAATTGAAAT # Left flank : TTGGAATTGAAATACCCTATTAACAACAAAACACCGCCTCTCCCTAAGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGAACCTTATTGGAATTGAAATTGGCAATACCGGCAGCAAGTGGGGCAAGAACCTGGTTGTTATAATTGAACCTTATTGGAATTGAAATCGTGCATAGGACCACGCAACCCTACAACGGCGAGTGTTATAATTGAACCTTATTGGAATTGAAATTCTATTTGTAAGTGGAAAATTTGTAAGACACCCTGGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAATTGAACCTTATTGGAATTGAAATAAGTCAGAAGTTTAGAATAATGCTTACCCCCGACAGTTATAATTGAACCTTATTGGAATTGAAATTTCTTAGAAACGAAAGCAGCGGTGCACTGTTTCAAGGTTATAATTGAACCTTATTGGAATTGAAATTGCCGTAAAGTCTTTCCCACGTCTCATCGTCAACAGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTATAATTGAACCTTATTGGAATTGAAACCGCAGATTGGTTCAAGTAGTGATTACGCGAACGATGTCATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATTGAACCTTATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 11 3816-3976 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820157.1 Prevotella sp. HMSC077E08 Scaffold111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3816 30 96.7 35 N............................. AAGTCAGAAGTTTAGAATAATGCTTACCCCCGACA 3881 30 100.0 36 .............................. TTCTTAGAAACGAAAGCAGCGGTGCACTGTTTCAAG 3947 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTATAATTGAACCTTATTGGAATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGAACCTTATTGGAATTGAAATCCCGATAATCTTAATTAATAACGCTTAAAAGTATGTATGTTATAATTGAACCTTATTGGAATTGAAATGCCTGCTGCTGTCCCTGTGGCATGGTCATCAACACAGTTATAATTGAACCTTATTGGAATTGAAATTGCTTAGAGATCTTTTACGGTGTTAAACATTTCACGTTATAATTGAACCTTATTGGAATTGAAATAATAGCCTGCACAGAGTGTAGCTACAAAAGACACGTTATAATTGAACCTTATTGGAATTGAAATCAGGAAAGGGGTGATATGTCTTTGTCTTATCTGATGTTATAATTGAACCTTATTGGAATTGAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTGCCGTAAAGTCTTTCCCACGTCTCATCGTCAACAGTTATAATTGAACCTTATTGGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTATAATTGAACCTTATTGGAATTGAAACCGCAGATTGGTTCAAGTAGTGATTACGCGAACGATGTCATTATTGAACCGCATCGGATTTTGGGCGTAATAGACATTCGGGAGGTTATTTACCTGCCAAACATCTATTACCCCAGCCGGTTTATTCCCAATATTCCTTATCAGTCTTGATGTCAAGCCAACCGGGAATGCCATTTTTGGTGATGTGATAAAAAGAACGGGTGGTTTGTTTTATCTCGTCATAGACGGGGGCTTTGTCACGGGGGAAGATCCCTACTTTATTATCTTTGTAGAAATAAATCAGACCATCGGACTGCATGATGAT # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATTGAACCTTATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //