Array 1 2783-3086 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000185.1 Bacillus sp. VT-16-64 NODE_200, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2783 33 100.0 36 ................................. TAAAGAAATGTCTTGCCGGGATAGTGATTACCAATT 2852 33 100.0 33 ................................. TCGCTCTTGTTTCAAATGACTCGAATCATTTTT 2918 33 100.0 36 ................................. CTCCAACATCTTTTGGCTGCATGACTGATTTTGGTC 2987 33 100.0 34 ................................. TTTGATTTAAAGGAAATGTTTGGTCGTCCATCTC 3054 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 100.0 35 GTCGCACTCTATATGAGTGCGTGTTAATGGCAC # Left flank : CAGGAAGGTAGAACAAGATGGTATTCCTGAATTTGAGAAGGCTATCCGTACATTCAAAAACTGGCAGACAGAAGTACTAAACAGCTTTTTACTCAAATGGTTTTTTGGAGAGAATTAATAACCTAACGAAAGTCATGAAGAGGAACGCCTTTGGATTTAGGAACTTCCTAAGGGGAAGAGCAAGAATACTTCTTTTACATAAGTATAAAAAAATTGGAAGTCATGTTGGGTAAAGTGAGATTCTATCTCACCCCACTCCAACATTTGACATAGAACCATTTTAATTAAAAAGAGAAACGTCAGTTTGTATAAAATTGAACGTAAACTTTGCTGCGGACCCCAAGCGAACATAAAATCTCCGGGGGACCCGCACCAAAAAAACCCAGTATAATACGAAAATATATGGTAAAATTGAAAAGAAGATAGGCGAAATATCCCCAAAAACAGGTTATCCTACTAGATTTAGGGAATGATTTTCCTTTTATTAGGAGATTTTCGCT # Right flank : CGTCGCATATTCTTTGTTTGTTGTGTGTATATTTCAGTGTCTTGTATTTTGTATTGTAGCTGTCGTAACGATAGAAATAAGAACGCACAAGGACATGTTGTAGTCGCGAAATTCCATTAAGGCCGATCATTTCCTCTTACTCGTGGTTATATGGGATGACACTCTGCATGTTCTTGATCCGCCAGTTGCTGACAGATTGGCTCAATATCATAGCCGGCATTGAACAGGCCTGTTACTTGCTCATTTTTCGATATTTGGAGAGGTACTCCTTTTTCTATCCTCGAACTTTTAAGGGCAAATGGTGACATTCATTCATTTATATGAAAGGGGGATTCTTCATATACTGCTCAACATGTTAACGCTTGTTTACTCGGAGTCTCTCGGTTAGCGATCATGTAAACAATATGAATCCACGCAAATTGTTGCTAGTGTTTGAAAATCGAACTTGGCTTTCTTTATCTAAAGATTGAAGTTTTTGTTTGTCGTAAATATCATATTAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGTTAATGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 12344-12839 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000185.1 Bacillus sp. VT-16-64 NODE_200, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 12344 30 100.0 37 .............................. CTATAACAACAAGACTTGAAAAAGTAGGGCTGATGCG 12411 30 100.0 38 .............................. AGCGAAAGAGTGGCAATATCCACTGACTGCCCATCAGC 12479 30 100.0 37 .............................. TCGTAGGCCGTAGTGAAAGCACTAACAACACCGTCCC 12546 30 100.0 37 .............................. TGGTGAGTTAGTTTCACTTAGTAATAGAGTGGACAAT 12613 30 100.0 35 .............................. AATGCCAATAAAAAACAGAAATCCAGCTAAATATC 12678 30 100.0 35 .............................. CTAAAGGCGAGATTACAAACATAAGCGTGCAGCGA 12743 30 100.0 37 .............................. CTCAACGGAGCTGGCGGTCGAACTGTCGGCTGGCATT 12810 30 96.7 0 .....A........................ | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.6 37 GTTGACATCTTACCTAAGAGGAATTGAAAC # Left flank : AACCGCTGCATGCCTGGATGTTCCCGCATTCCGAGTAGTAGAAATCAAGGACGGCCAAGTGAATATCGACATGATTTCGATTGATGACGAGACGCTTATGGAGCAGATCGCGATTGTCAACACAAAAATACCAGGATTTGTCCCTATCGAGCAACCGCATGGAGAAGAATCCGACCGCAACTTGCTCGTAGAGATTCAAGAACCAGTTACAGAAACTGGGAAAGTGTTCTGAAAATCGTCTAGGAGTACTGTTGGCCAAAGAATGAGCAGCGATATATGACAAGCTTGATGTTGTATCATGAAAAAACACCCATTGTCGTCGATCCATCTCGTGACACCAAACCCGCGGGATCGACGACAAACCAACATGGGACAAAAGGCAGTAAACACAATGAAGCGAAGTTATTTGGAAATGAAGTGAAGCTATTTGTAAAAATAATTACTTTTTTTCGCGAAAGATGTGATATACAATAAGATGGTAAGAGCCATGTTGTTTGGGG # Right flank : CCGTAAGATCCCCCAGGAAAGCGACCTTTGCTTTCCAAGGAAGCTGAGAGACCTGTGGAAAGCGAAATATGTTGACGTAGCGATGATAGGGATTTTTTTAACAAATAAACCGAACAATTATAAATGAATTGTACGGTCGTATTTGCTTATGTCCCAGCCCGTCCTTCCCCTTGGGTTTCCGTTGATCAGACGTGTATTTATAAAAATCAGGATGCTTGCCTATCATTCTATTGGAGTGATAGGTTTTTTATTGCGGAAATTTTTACTTACTCTTAACATAATTTTTATTTGGGATTTGAATTTTTGTTATATACTTTTGCTTTAAGGGATCATGATTGGATCTCGAAGCATTTTGTTTGAAACGATCATTCGTCTAAAAGGAAGGCACCATGCTATTATGCCGTATGACTAGATGCTTCAATTTTTATTTTCACTATCCTCCACGATCATGTGAGTCATTGGAAAATAGAAGAATCTTCTGTTAAAAATACTATGATAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACATCTTACCTAAGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 2076-185 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000276.1 Bacillus sp. VT-16-64 NODE_307, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2075 30 100.0 39 .............................. AAGTTAATGAGTAAACTATCAAACATAGAGATACCAGTA 2006 30 100.0 37 .............................. GTGGAGGATTTTGAGTTAAATGCTAAATCTCTAACGA 1939 30 100.0 38 .............................. CGTTTACTGACAAGTACGGAAAGGAAACTGACAGCAAG 1871 30 100.0 36 .............................. AAGGCTTTGGTAACGGGAGATTTCGAGGGAATGGTT 1805 30 100.0 36 .............................. GAATATCGTGGGAAAACTGGTACAACCCCCGTACAC 1739 30 100.0 36 .............................. TTGCACGGCATTATCGAAGTTGAATTTCAATTCCAT 1673 30 100.0 36 .............................. AACAACGAAGGTTCTGCCGACACATACCCGATCGTC 1607 30 100.0 36 .............................. TTTTTGTACTAACTCCAAATGAGTTCACCGATCTCC 1541 30 100.0 36 .............................. ATGTGATGCACCATGTCAGCTGGTGTCAGTATGCCT 1475 30 100.0 35 .............................. AGATTGGCCGAATTTCGGACTTTGAGACAGCGTAG 1410 30 100.0 35 .............................. AAAGATCAAGATGAGCAAAAATTGAACTTAGAAAG 1345 30 100.0 35 .............................. AGGAAAACCAACGCATCATCACTAAGTGGTCAGAG 1280 30 100.0 36 .............................. AAAGATGCGCATGCCAATCGGTTTGATTATTTTAAA 1214 30 100.0 35 .............................. ACGTATGATCTTGCGGATGTGGCAAGTTCTGTCAC 1149 30 100.0 36 .............................. GCAGACGAATCATTGGGTGGAATTGAGCGCGAGTAT 1083 30 100.0 36 .............................. TCACTTATCCATAGCAAGACTTCACAAGTGATCAAT 1017 30 100.0 36 .............................. GATGACACTATAAACATACTTGATATAGAGGAAATA 951 30 100.0 35 .............................. CAAGTATGAGCGCTTTTTTGTCAAAGCTGTGAGCC 886 30 100.0 39 .............................. TGTGCTAAACCCAGCCAACGCTTGCCAACAGGGCTATCC 817 30 100.0 36 .............................. CAAGACACACGAGCCTATCATAACCGCTACTCCATA 751 30 100.0 38 .............................. GGTGACATAGATAAATGGATATCCGTTCATGAGTCTAT 683 30 100.0 38 .............................. CCAGTTGGGCTGTCAGACATACCAGACGTAGGGGTGTC 615 30 100.0 36 .............................. CACGTTCGCAGGCGTTTTCCGCATTTCCCCACCATA 549 30 100.0 38 .............................. TCTGAAAAAGAACCTGAACCTCCAAAGCCTACGACAGC 481 30 100.0 37 .............................. TCAATATGGATGAAAGTATTGTTCATTCGGTTAGGAC 414 30 100.0 37 .............................. TCGATCAATCCGATGAAATCGATGAAGATGGCATGGC 347 30 100.0 37 .............................. TTGTAATGTTTTTTTCTCCTCTGGAGTTTTTCTGTCC 280 30 100.0 36 .............................. CGTGTAGCTGCGGCAGGCTTCCCGGTAATCGAAAAC 214 30 93.3 0 ..............C.....C......... | ========== ====== ====== ====== ============================== ======================================= ================== 29 30 99.8 36 GTTAACATCTTACCTATGAGGAATTGAAAT # Left flank : CATATATTAGGTGAAAAAGAATACGAACCGTTCGAATCGCTTTGGTAGAGGAGGATTTCAGAGAATGTTCTTAATCCTTGTATATGACTTTGGAGAAAAAAGAGTCGGAAAAGCATTGAAAATTTGCCGAAAGTATTTACACTGGGTTCAAAATTCCGTTTTTGAAGGAGAAATTTCAAAAGCAAATTTTGTAAAATTAAAAAAAGAGCTGGAGCTACTCATGGATCCAGAGGAAGACTCGATCATCTTATACACATTCAGATCACAAAAATTTTCTAAAAGAGAAATCATGGGCTTAGAAAAAGGAAACATAGATTTTATCCTGTAACATTTGTCGTCGATCTATCTCGTGACATCACCCCCCGGGAGATCGACGACAAATCAAAATCATCCAAAAAGCGGAAAATGCAACCAGTATGAGCCCTGTTTGGGAAAAAATAACTTTCATTTTTATAAAATATGTGATATACAATAATGTGATAGAATCAATGTTTTTTGGG # Right flank : TTTGGCAAACGCCGCGGTCTTTGTAAAATTCACCTTGCGTTAACATCTTCCCTATGAACTTTTCTCCGTGCTTTGATTTTCGCTTTGCCTCTCCGAATCTCTTTCTCGTTTATCCCGCATGTAAGGTGCCGTAAGGCTCCCACATCAAAATCTTGAGCGAATACAAAAAGTATAAGTGTGAGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACATCTTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 13228-11537 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000276.1 Bacillus sp. VT-16-64 NODE_307, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 13227 30 100.0 38 .............................. GAGAAAAGTGAACTCATTTTAATAGGGGCTTCTACTTA 13159 30 100.0 35 .............................. TAGTCTTGAATCAGTCTACGTTTTTCGCTCCTCGA 13094 30 100.0 36 .............................. CTGATAATCTTTCTGATGGTAGGGATGAAGGTTCTT 13028 30 100.0 36 .............................. TTGTATGTACCATATGGGTTATCAAAGCTATACTTA 12962 30 100.0 38 .............................. TCGCCAAGAAATAATCGAAGGCTTGTTCGAGAGGCATG 12894 30 100.0 37 .............................. CCGGACGAGCCTATCTATGATTTGGAATTTGCGTATA 12827 30 100.0 35 .............................. TAGAGCTTCTTCGTTTTCCACGAGTACTGCTAGAC 12762 30 100.0 38 .............................. TAGGAAATTGCCAAACACGACCGACGCAAGGAGGAAAA 12694 30 100.0 36 .............................. GGAGTTACAACTGTTGTAGCAGGATTGACAGCGGCG 12628 30 100.0 37 .............................. TCGTAATACAACCCTCGGACTGTATTACGTGCTAATC 12561 30 100.0 35 .............................. ATGGTCGTACATCTGTTACGTTGACAGCCCTAAAT 12496 30 100.0 35 .............................. ATACTTTGTCGGCCGTTGTCCTCGTTGTAATCGTC 12431 30 100.0 36 .............................. CAAAAGCCTTTACGAATTCATCGGACGTCATCCCCG 12365 30 100.0 36 .............................. AAGTATGTCGAACTTTTTTAACGCTCTAAAATCAAA 12299 30 100.0 37 .............................. TCAATAGCATCCTTAATACCGGGCAAGCCCGTGTTAT 12232 30 100.0 35 .............................. TCAATGAAGGTGATCTTTGGTTTAAAACCGTCGAT 12167 30 100.0 38 .............................. TTGTAAAATCGAACCTGTATATCTGATTGAGGTCTCCC 12099 30 100.0 37 .............................. TTCGCTGCCATTGCTTAATACCCCATTTGTAATCTTT 12032 30 100.0 35 .............................. AGTGGAATCTGGGAAGTTATCAAAGAGATTTATAA 11967 30 100.0 38 .............................. CGGGTTATAAAGGAACTGCTACCCAAAACACGGAACTT 11899 30 100.0 36 .............................. CCGTAAGCGTCTCTGCAATCGCGGACTTATATTCAT 11833 30 100.0 36 .............................. AGATAAAGAACGGGGAGGAATTAAAATGAAAAAGGT 11767 30 100.0 36 .............................. TGAGGATAGTCCACCCTACTAATAAATCCGATTTCC 11701 30 100.0 37 .............................. TTCCACAAAACCAAACTATGAGTGGTATGCAGTGGTG 11634 30 100.0 38 .............................. TGAGTATAAGTAGGAATCAGTGAATCGGGATCAACAGC 11566 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 100.0 36 GTTTGAATCTTACCTATGAGGAATTGAAAC # Left flank : TCAGTCGCTCGTTTATTCGACTCTCCCTCAACAAGAAGCTTCATATCTTCACGATCAAGGGTACCGCTACCATAACCGAACGTATAAACTATTTTGTTTTTCAAAAATAAAAGCCAAAAAGGCGACTTTTGACAATAGCACTAAAGAAATTACGTTTCATGACCAAATATCAATATCTATGGGGCAACAAATTTCGTATACAGGGATCGTTAAACTCTCTTACAACAAATGAATACAAGTTAATACACCCTTCATTTTTTGAGGTTAGTGTTGACATACCATGAAAGATAAATTATGGATTTTAAAAAAACTTAGATTTTATCCTGTAAACAGTTGTCGTCGATCTATCTCGTGACATCAACCCCAGGAGATCGACGACAAATCAAAACGGTACAAAAGCTAGAAAGCACCATTATTATGAGTCTATTTGGGGAAAACACCTTTCATTTTTATAAAATATGTGATATATAGTAATTGTGATAGAATCAATGTTTTTTGAG # Right flank : ATCTTAACAATAATCAAACAGCTTGTTTTTCCACTTTCCAAGATATATTTCACCATATTTATCATATGCAGTTATGGCAGAAAGGGCTCGTAATCTGGTAACTGGAAATGAGCTTTTATTTTTGCGATTAAAGTTTTATGCAAATTTTAGTCTCGTTTATCCACTTTGGTAAAGCATCTTTTATTCCCCGTTTTTTATCCTGCATACTTAGTTTCATAAGTTATCGCTGAAGCATATTTATTGCTTTCAGTTGTTCCTCTTTGTGCTGCTCGCTGATCTACTTGGAAATTTGTTTTCCTACCTCTTTCTTATCCATTTAACATTCCTTATGACAACTTAAATGACAATAGGTGCTGAAGGTAAAGCATAAGCTTGAAATTCAGATCCATTCAGGAACTGAAGCTGAGAAGGGTCTGTAATAAAGAAGGCCTATTGTATCGTGCCTTAAGAAATTGAGATTAGGTTGAGCCCCTTTGGTTTATTTGACTTTCATCTGACCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 158802-161428 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000257.1 Bacillus sp. VT-16-64 NODE_286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 158802 32 100.0 33 ................................ TGTACTGGCTCCTGGAAGGGAGAAGTTATCGGT 158867 32 100.0 37 ................................ CTCACGCTGTCCGTGAAAAATGTTTATGATGGCAAAG 158936 32 100.0 34 ................................ AGAGCTGGCCATGACAGAAAAGGCATTGCTAGAA 159002 32 100.0 35 ................................ TTGAACGATATGACCTCGGATATATTGCGAAACGA 159069 32 100.0 34 ................................ GTATTCAGTAAAGGAAAACCAAAGTCTTGCAATT 159135 32 100.0 35 ................................ TAACGGTTGAGGACGTGCAGGACAGCGTAGAGCGC 159202 32 100.0 34 ................................ GCTTGTGGACTTAGAACCGTCCTTTAGGCGTATT 159268 32 100.0 34 ................................ CAGTCATCGAGGTCAAGCTCAAAAAGCCTGTTAC 159334 32 100.0 34 ................................ ACACGGGCAGCAGTTAATGAAATCTGAAACACAA 159400 32 100.0 36 ................................ GGGGATCAGAGTGATGCCACAAAAAAGTTTTTAGAG 159468 32 100.0 34 ................................ CTCTCTGCATAGACAGCATAGAGGAGGGTGATTT 159534 32 100.0 35 ................................ TAACGAGGACGGATAACCGGCTCCCGTCCTCTCTT 159601 32 100.0 35 ................................ TAGTTCGGCTGCATTAACTTTTTGGGCGAGGACTT 159668 32 100.0 34 ................................ TCTCCCAAAAAGATATAAAGCGCAATTTGGAAGA 159734 32 100.0 35 ................................ CGAATCTCCTTGCTGAACCTTGTTATCCTGCGGCT 159801 32 100.0 35 ................................ ATGGCATTGCTCAATCAAAAGCAAGCAAGGCGCTT 159868 32 100.0 35 ................................ AACGAGGTGGGATTTTACCATTAACGAATGAACTC 159935 32 100.0 33 ................................ CTGTAGGCAGTAAATTTGTTGTCAACATCTAAT 160000 32 100.0 34 ................................ GGCGAAGGAAATAATGTACTCATTAAAAAAGCCG 160066 32 100.0 35 ................................ CGGTTGAAACCCAGCAAACCCCCAGCCAGTATCGG 160133 32 100.0 33 ................................ CGGCCTGACTCCGAATACGTGCCCGTTTACTCG 160198 32 100.0 34 ................................ ATTACTGCACATACTGAAAATCCTGCAAATCGTG 160264 32 100.0 34 ................................ CATAAACTCGAATGCCTTTCTATCTTCGGTTTTT 160330 32 100.0 33 ................................ AAGCTTTTGCCCAGACACTGCCGCACGTTTTAA 160395 32 100.0 35 ................................ AAATAGCCGGCACTGAATACTAAAAATAAAACAAA 160462 32 100.0 35 ................................ CTAGTGTCTCGTGAAGCTATTGAAGATGCGGCGGT 160529 32 100.0 37 ................................ CTTCCTTCTGTTCCTTTGAGACTTCTTCGTACTCATT 160598 32 100.0 33 ................................ ACCTTTTGCATTCCGTTGGTTACTAATATTGAT 160663 32 100.0 35 ................................ CTTACATAATTACGTCCACTCCCCGGCTCGTCGCT 160730 32 100.0 34 ................................ CGTCCCGATAAACATTGTAAGTTGTCATGTTATA 160796 32 100.0 36 ................................ CAGTATGGCATGGAAGAATTTTCCCGAGAGTCTGCT 160864 32 100.0 35 ................................ CTCCCCACCCCCCACGATATGGAAATCACACTACA 160931 32 100.0 34 ................................ TAAAGAGAAGCAAGAATCATTGCTCAACAAAATT 160997 32 100.0 34 ................................ CAGCCAACATATTCGAGTAATGATTACAAAGATA 161063 32 100.0 35 ................................ TTTTAGGATGTTTCACTTTAAAGGATTTCCATAGA 161130 32 100.0 36 ................................ TCATTTTAGACACAAAAATTCCCTCCGCATAGCATA 161198 32 100.0 34 ................................ TCACAGCAAGTCAGCCATTTACTACGAAATTAAT 161264 32 100.0 35 ................................ CAGTGAGTCTGATAGCGGAGACGTTTTCGTGTCGC 161331 32 100.0 34 ................................ CGACTGTTTGGAGCTTTTCTCCGGTCTTGGTCAT 161397 32 93.8 0 .......................A.......A | ========== ====== ====== ====== ================================ ===================================== ================== 40 32 99.8 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TGTCTTCACCCTCATCGCACAGGTTTGAAATGATCTTATTTAGCCCTATGATATGGTATAATAAGATACGTTTTTCACTGTTTATATGGAGAAGTGGAGGCGAGCCGATGCTTTCTTTCAATCTACCTCTTTATATTTCCAGGCAGAGGAGCTTTGTGTGGGGGGAAGGGAGCGAAGTTTGCTAGACGCTCGGTGCTGAAGCTAGACAACGATAAATGATTCAGCAGCACTTTCCATGAGTCCGTGGATGAAATAGGGAACTTCGATTCTGGGACTTTTAGTTAAAAAAATAGAAATGTCAATGTGCATAAAATATAGGGCTTAGACTTTGGTGCGGACCCCAAGCGAACATAAAATCTCTAGGGGACCCGCACCAAAAAAGCCAGTATAATGCGGAAATATATGGTAAAATTGAAGAGAACGCAGGCGAACTACCCCAACAAACAGGCTATTTTGCTAGATTTAGAGGTCAATTTTCCATTTATTAGGGGATTTTCGCT # Right flank : AATTTGTGGACTCCTCCGTTTTCGTGATATAATATGTCGCACTCTGCTGGATAGAAGTCTCTATATCTGCCAGTTTACTTCGTCCGAATATTACATATAAAAGTGATTTTTTCTTGCCTTTGGATAAAGGCTAAGATGGAAAGCGTCCTGCCTCTGTTGGTAAGCCTAGGCCAGTCAGGCACTCGAAGTTTATCTTTTTTTCTTGAGGTGCAATGCTGCCGGACTTCCTTACTCTATCGCTTTGTTTGCGAAGGTATACCTTGCGGCAGCATCTTTGTGACCGTCATCTTTGAAACAGTGCTGTCGCTTATTCCTTGCCCTATCGGCCTAAGCCAATCGGGCTTTTTACAGGTAGTTACACGCTGAGGCAAGCCCTTCTAAAGCGGTTGTCCTCCTTTTGAGTTAATGAGGAATAAAAGTAGTGAGAGTGGGGAAAAGTCCGCTCCCATCATGTATGAATCATTTTAGCGGAAGGGATGTATTTTTATGGAACAATATTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16439-16270 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000039.1 Bacillus sp. VT-16-64 NODE_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 16438 33 66.7 34 .AG.CTTT.T...G....C.CA........... GCTTTATAGTTAAGGTCTCCGGAGGAAAAGAAGT 16371 33 100.0 36 ................................. TTCCAATTGTATATGAACTGGATAAGCGGTATGAGT 16302 33 57.6 0 GT.GCACTCTATATG.................. | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 74.8 36 AGTTGCACTCTATATGAGTGAGTGGATTGAAAT # Left flank : TTCTATCATTGGCGTTTTCACGATGACGGTACGGAAAAGCCGGATTTCGTATTAAACAAACCTGAATATAAACATAGCGAGATTCTGGTTGCGCGGGAAAACTTCGGCTGTGGTTCTTCGCGTGAGCATGCTCCTTGGGCATTGGGCGACTATGGATTCCGTGTCGTCATCGCACCGAGCTTTGCCGATATTTTTCACAGCAATTGCTTTAAAAATGGCATTTTGCCTATTCAATTGGAAGAATCGAAAGTCGAAGAACTGCTGCAAGCAGGGAAGGAAAAGCCGTTGCAAGTCACAGTCAATCTTGAGACTGAAACAATCAACACAGCGGATGGGAACAGCTATTCATTTTCCATTGATCCGTACCGCCGCCAAATGTTGTTGAATGGCTGGGATGAAATCGCCTTGACATTGCAGTTGGAAGATGAAATTACGGCTTATGAAAAATCAATCGCTAAATAAGTAAGGAAGACTTGACGCTGGCTTGGAGACCAGCGGGC # Right flank : TTGCCGGGGAAGAAGGGGGGACTTGGACGACGTCGCACTCTATATGAGAAAAAGCACATCTTGGTCATCTATAAATGCTACTCTAAGAATGTACAAAGTTGATTGTTTAATAATGTACAGTTTCGACCAATAACCGCATAATATTCTTGAGGTGAATACTATGTACATAACATTGGACGTCAACACAAATATAGAGATTAACCATCTTACGGATTTGCCAAAATTAAATACACTAATGGAGAGCTTAAAGATGAAAATAAATAAAAGCAGATTGGCGCGAGATATGGGTGTGGATCGAAGGACGGTGGATAAATATTTCAAGGGTTATATGCCTAAAAGCTTCAGGAAGCGAACATCAAAAATAGACGAGTATTACGACGTGATCTCCCTGCTTTTATCCAAAGAATCAAAACAGGTCTTTTATTATAAAAGGGTCCTTTGGCAGTATTTAAAAGATAATCACGGCTTGGAATGCTCCCAGTCAACATTTAGGGCCTACA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:3, 4:-0.26, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCACTCTATATGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.00%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10778-10545 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000081.1 Bacillus sp. VT-16-64 NODE_84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10777 32 100.0 35 ................................ GTTTCCAAATCTGGAAATGATTCTTTCGGACGCCC 10710 32 100.0 36 ................................ TCGGGAACCCGGATTCCCCGAATCTCTCCACAACCT 10642 32 100.0 34 ................................ GTGCAAATTTTGCACAAGGTTAAAACGGTCGATG 10576 32 93.8 0 ...........................GC... | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 98.5 35 GTCACAACGTATATAGGCGTGTGTATTAGTTC # Left flank : GTCGGGAAGTATGGCGGAAAAGGGTACCCAAAATGGGTATACTTTCGAAGAAGATGAAATGCGCATAATGCGCAATTACAAAGCGCAAGTCACACCGGACATGTCACGCCAAGAAGCTCCTTCTAAAAACATTAATAATAATACATATAAAGAGACGTATATAAGCGCGGATGAAATAATTAAGCGCGGCCTTAAACACGCTATCCCTACGCCCATTTACAACGCCCTGGCGCCCTTTTTCGGAGGTCAAGAATTATACGATACCTACGGCATACTATTGCGTGCCAAGGCGTCTGTAGACCGTTCTATCACGCTAGAAACGCATGGACAAGCCTATATTGACGCATTCATGAACGTTGTCAGACTGTATAAAGCGGGCAAGGTGCGGAGCCTGTCCGGTCTACTTTATCGCACATGGCAGGCGGTTACTTCGACGATTAAAAGACGCGTCAGCGTGGACAAGCATCCGGTATTATACGACTGGCTTGCTTAAATTCGCA # Right flank : TTCGTTTCCATGTCCTCCGATTTTCGGAGAAGATCGTCACAACGTGCGAACATGCTGCAACTACTCAAGTATCGACCTACGTAATCGACGGATTAAGCGCGTCGTTATGCGGAATGTGAAACGTGTTTAGATACAGAAGTATCGAGGACATTCCCGAAGATGACATACCGGCATATATCACGGAAACTAAACTGAATAGGGATGATTTAAAAAACGGACAGAAAGCGGCACTAGTGATTCGGCTGCACTATAAAGATGGGGGTGCGCAAGGGAAAAGAACGGACTTATCCCAAGATTGGGAAAAGTTAAATATCCACGAAAAACTGGCTAAAATGGCAGGAATCAGTAAAGGCTCTATCGGGAATCTAATAACGGTCTACAAACGACGTACCGACCTATTCGAGCGGGTATTCAACGGAGAGTATTCGATTAATCGGGCATATACGCAGATGAAGGCGGACGAGCAACCGGAAGGCGTTAAATGCGCTAATTGCTCGCCT # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAACGTATATAGGCGTGTGTATTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 62425-60248 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000329.1 Bacillus sp. VT-16-64 NODE_364, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 62424 32 100.0 33 ................................ GATTGACAGGCGCCATGTGTCACTTTTCTCCCT 62359 32 100.0 34 ................................ TATTTATTTACGGCGCACAACGAGTAGAAAAACA 62293 32 100.0 34 ................................ TTACGGAAACATGCCGACAATATGCGCGCGGTCG 62227 32 100.0 35 ................................ AAACTGGAAGGCGTCGAGAATAAAACGGACATCGA 62160 32 100.0 35 ................................ TAAGATGTACAACGAAAAGGAGGCGATAAATTGGC 62093 32 100.0 35 ................................ ACCTCGATATGGCGATAGTCCTCGCGGGTTTAACG 62026 32 100.0 36 ................................ TTCTTGCTCATTGGCGGAGAGTATTCCGCCTGCTTG 61958 32 100.0 33 ................................ TTTTATTTGGCAAATGAACTGCTATCTATCTTA 61893 32 100.0 35 ................................ ACGGTGTCGGTAAAAAAGATATACGGATAGCCGAT 61826 32 100.0 37 ................................ CGTCATTTTGATCCTCCCCCATATCAAACTCAAGCGC 61757 32 100.0 35 ................................ GACCATATTGGCTCGATGCTCTGCGAGACTTGTCC 61690 32 100.0 35 ................................ AAATGGACAAAAACAAAAATACAGCATAAGAAAAC 61623 32 100.0 35 ................................ AATACAACGATGAACCGGTATACAACAGCGTATAA 61556 32 100.0 35 ................................ CGGCGTGTATATCGTCGAGCTGACGTCGTAGCCCG 61489 32 100.0 37 ................................ TATTTATTTACGGCGCACAACGAGTAGAAAAACAGAC 61420 32 100.0 36 ................................ TTTTAAGGAGGTGAAGACATGTATACAGTGTCAGCG 61352 32 100.0 36 ................................ ACGGTGTGGGTGAGGCGTCATGATCCACAAACTCTA 61284 32 100.0 34 ................................ CTCTATGCATAGACAGCATAGAGGAGGGTGATTT 61218 32 100.0 36 ................................ TGCGTAAATTTCTACCAAGTGACTCCATCGCCAATC 61150 32 100.0 34 ................................ ACCAGGATAAACGGGGAATCCATGAATATGATAA 61084 32 100.0 35 ................................ TTGGCAATTCCTTTGAGTGCTTTCCTGCTGTTTAC 61017 32 100.0 34 ................................ CATAATTCAGGAATCAAAATTTGAAGAAACATTG 60951 32 100.0 34 ................................ ACATCAATGAATCACTCCCTTACGAAAAACAATT 60885 32 100.0 35 ................................ TTACCGCCTCAGTTGTATGCAAATAAACTTTTCTA 60818 32 100.0 34 ................................ CTTCATACGAAAGACTATTTGAATCTAAATACAA 60752 32 100.0 36 ................................ TCAAGAAATTTATCAAGCTTTGGGCGATGATTCCAC 60684 32 100.0 37 ................................ GCTTCGGTGACATTATCGAAAATGGGTGGGTTTCAGA 60615 32 100.0 36 ................................ AAATCGTCAATAACTCTTTTAGGCAAAGATATTGAA 60547 32 100.0 34 ................................ AACCCACAAATTATAATATCTTCCCATTTTTAAT 60481 32 100.0 35 ................................ AAAAAGCGGCTGCGTCTCTTATGGAGGCAGTCCCA 60414 32 100.0 35 ................................ AGTCGAAGTCATGCAGATGGAGACAAAGCTAAATG 60347 32 100.0 36 ................................ TCGAACAGCAAAAACCCCCGCTAACTAAGCAGGGGG 60279 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 99.9 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTCGATAAATGAACTAACTCAATTGCATTTCAAGACAAGCCATTTTTAGTAACGTTATTGGTCATCTTGTTTTATTAGTTATTGTAACTGGATTGATATGGGCAAGTTATCAGTTTGCATGGTGTCATTAGGATTGCTGTTATTTTTTGGTGTTGAGCGGCTTAGTGCTTATTTCCGATATTTTCTTCAACCCTTTATTATATAAATATTGGAGTGACAAATGCTAGGTAGGATCGAATTGATTAAGGAAAGGAAATTTTAATGGAAGAACTTGAATAATTCTTATCTAAAAAGAGAAACGTCAGTTCGTATAAAATAAAACGTAGACTTGGTGCGGACCCCAAGCGAACATAAAATCTCCAGGGGACCCGCACCAAAAAAACCCAGTATAATACGTAAATATATGGTAAAATTGAAAAGAACGTAGGCGAAAATCCTAACAAACAGGTTATTCTACTAGATTTAGGGACTTATTTTCCTTTTATTAGGAAATTTTCGCT # Right flank : GGCTCTGGTGTGCGCCACTCCATGATTGAATGTTATTGATGTTGTACGCATCATTTGTTTTCCAGCTCGACGTGCTCCATGTGGATAAAATAAAAGTTGGTTTGATTTAAGTAAATGCCACGCAATAAAAGGGAAACGTCAAGGAGAGTATAATAATGTCATTTGGGAAATAGTGGATTTAAACTACGGACATTGTAACTACTTTGATCTCGTACATTTTTAAAAAAGCATATGTTCAGGCGATCATTCGCTACAAAAAATTCATGTTTGATCGAATGATATAATTGGTAAAAAGTGGGCGTTCATTTGTATAATGGCTTTATTCCCTCTGATGATGAATCTGATTGTTTTGATAAATAGAATCCGTCTGTCGGGGGCTGTATATTTTGTAAAAAGGGAGATGGCAGATGAGTAAACCGGAGTTATATGTAAGTTTAGTTGTAGGCCCAGATTGTGATTTGGAATCATTTGCTCTTCGGACAGCATTAGAATCTTTTGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 67084-69298 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000329.1 Bacillus sp. VT-16-64 NODE_364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 67084 32 100.0 34 ................................ TGAGTATTTTGAGGGGAAATCCCGTGAGGAAATT 67150 32 100.0 34 ................................ TTTTCTTGGTCGTCGGTGCGGTAATCAGTATCTT 67216 32 100.0 34 ................................ TTTCATGTGTTCTGGAGCCAAAACAAAATTCCCT 67282 32 100.0 33 ................................ ATGGCTCTCCTCCAGTTACACATCGGACATAAT 67347 32 100.0 34 ................................ CATGAAGGTCACTGCCCCTATCGTTGCGGGTGGA 67413 32 100.0 33 ................................ ATGTGCACTCTCTGGAGATAAAGAAAAAATAAC 67478 32 100.0 37 ................................ AACGATGTTATGCGTAAGGCACGGTACGTAATCAGCC 67547 32 100.0 34 ................................ CGATCATATAAAATGTTGGGCTGGGGGCGATGGA 67613 32 100.0 36 ................................ ATATCGTTATTGGCAGACGAAAAGGAAATCGTATTC 67681 32 100.0 35 ................................ GACCAAATCATCGCGGATCGCTACAATAAATATTC 67748 32 100.0 36 ................................ CGTCAGTTTATCGGCGAATCCGAATAGCATATTATC 67816 32 100.0 34 ................................ TCGATGTCCTCCGCCCATTGTCGTAAGTGTGGGA 67882 32 100.0 35 ................................ TTTAAGTCACCGCGCGTCATGTTTTGGCTTTCGTC 67949 32 100.0 36 ................................ TGATTGGCTTATCGCCGCCCTCGATAGGCCCCATAT 68017 32 100.0 33 ................................ TAAAATCTGCTCGGTGTGTGAAGCGTAACTAAC 68082 32 100.0 36 ................................ GTACATGAGAGGGGGAGGGGGTATAAATGGCAAAAC 68150 32 100.0 37 ................................ AAAGCGCGCCAAGCAACTCGTATACGGCGCGTGGGCT 68219 32 100.0 34 ................................ ATGAAATGGACTGCGCCCGAGGATTGTCCGTTAT 68285 32 100.0 33 ................................ GCCTATGCCTTCGATTGGTTCGATAGGCTGTCC 68350 32 100.0 33 ................................ ACCTACAGAGAAGACTTCTTGTGTGCGAATATG 68415 32 100.0 36 ................................ TTTACACTTAAACCTGGCCGAAACGCATTGGCTATT 68483 32 90.6 33 .........T.CA................... GGTAAAATTGTGTTTCTCGGCATTTAAGTCAAG 68548 32 90.6 36 .........T.CA................... ACATATTTATTAAATTCAATTGCTCCCAACAAAGAA 68616 32 90.6 37 .........T.CA................... GTTAGGTATCTTGTTGACATCCTCAAAGATGATGCCA 68685 32 90.6 34 .........T.CA................... CCTTATGGGGGCTGTCATGCAGGCGGCCCAGTTG 68751 32 90.6 35 .........T.CA................... TTTTGAAGTTCCTCTGCTGTGAGTTCAACTTTTTC 68818 32 90.6 33 .........T.CA................... AATACAAAGGAGAGAAAAAGCGTGGTTACAATT 68883 32 90.6 34 .........T.CA................... AATGTTATATAACTTTCAACGGCAGTTACTGAAC 68949 32 90.6 33 .........T.CA................... ACACTCATCTTATGTGTTGGCCCTTTTGGATCG 69014 32 90.6 36 .........T.CA................... TATTTTGGAAATCGTTTTATCGTAGAAAATAGCATC 69082 32 90.6 33 .........T.CT................... AAAAAGCTTCATTATGAAATAAAATATACCCTC 69147 32 87.5 34 .........T.CA................C.. TTAAATTTTTCTATTTTTTCTATTTTATTGTTTT 69213 32 90.6 23 .........T.CT................... CAAGAGTATAGCACGATATACTC Deletion [69268] 69268 31 78.1 0 T........T.CT............-....TG | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 95.9 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : AATTGATATTTTATAGCTTTACGTCAGTGTTGATAATGGGTTTTTTGAAAATAATAAATCCATAGAAACTCATTTCACTTCGTGCAATTTTGCAAAAAACAAGCGAAACAATCTCACTAAGCGCTCTCCTTCAATTGGAATTCGGGGTTGAAATTGTTAATGCCGTGAAAATGAAGCTTTGAATACCGCTCGCACTTTGTATGAGGACTGGATGGTAATACAGTAGTTCAAAAAAGGATTGAACTGATTCTGGGACTTTAATGAAGAACGGGACATAATTTTAATTAGAAAGAGAAACGCCAGCTCATAAAAAATTGAACGTAAACTTTGGTGCGGACCCCAAGCGAACATAAAATCTCCAGGGGACCCGCACCAAAAAAAACCCAGTATAATACGTAAATATATGGTAAAATTGAAAAAAAGATAGGCGAAACACCCAAAAAATAGTTTATTCTACTAGATTCAGGAAATGATTTCCCTTTTATTAGGAAATTTTCGCT # Right flank : GCCTCAGGAATGGCTCTGGTTTGATGGATGAGCACTTGATTAAAATCCATTTCGTAAAAAGAGGATTGAACTTTTAATACTAGGACTCTTAGGGACTAGAAATGATTTTTTTATTAAAAAAGCGAAATAAGAAGGGTGTAAGCTTTGGTGCGGATCCAAGCAAACATAAAATCCCTAGGGGATCCGCACCAAAAAAACCCAGTATAATACGAAAATATATGGTAAAATTGAAAAGAAGATAGGCGAAACACCCAAAAAATAGTTTATTCTACTAGATTCAGGAAATGATTTCCCTTTTATTAGGAGATTTTCGCTGTCGCACTCTATATGAGTGCGTGGATTGAAATAAAATGATTGTTAACCATCTTGATATGGATATTTGTCGCACTCTATATGAGTGCGTGGATTGAAATAACAACTTATTGAACAGGCGTTTTATGGTAATGATGTCGCACTCTATATGAGTGCGTGGATTGAAATTATTTATACGAATACCGGTT # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 69613-69912 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000329.1 Bacillus sp. VT-16-64 NODE_364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 69613 32 100.0 34 ................................ AAAATGATTGTTAACCATCTTGATATGGATATTT 69679 32 100.0 35 ................................ AACAACTTATTGAACAGGCGTTTTATGGTAATGAT 69746 32 100.0 37 ................................ TATTTATACGAATACCGGTTTGACGGGATCGGCTAAA 69815 32 100.0 34 ................................ CTCGATAGAGCTTCTCTTAATCAAATCCGCCTGC 69881 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 5 32 100.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TAAAAAGCTTCATTATGAAATAAAATATACCCTCGTCGCACTCTACATGAGTGCGTGGATTGACATTTAAATTTTTCTATTTTTTCTATTTTATTGTTTTGTCGCACTCTACTTGAGTGCGTGGATTGAAATCAAGAGTATAGCACGATATACTCTTCGCACTCTACTTGAGTGCGTGGATGAATGCCTCAGGAATGGCTCTGGTTTGATGGATGAGCACTTGATTAAAATCCATTTCGTAAAAAGAGGATTGAACTTTTAATACTAGGACTCTTAGGGACTAGAAATGATTTTTTTATTAAAAAAGCGAAATAAGAAGGGTGTAAGCTTTGGTGCGGATCCAAGCAAACATAAAATCCCTAGGGGATCCGCACCAAAAAAACCCAGTATAATACGAAAATATATGGTAAAATTGAAAAGAAGATAGGCGAAACACCCAAAAAATAGTTTATTCTACTAGATTCAGGAAATGATTTCCCTTTTATTAGGAGATTTTCGCT # Right flank : TGGCTTGGGTTCAGGTCTGGATGAGTACTTGGTTGAAATATACTGGGAAAAAAGAGGGTTGAACGTTTGATTCTAGGGATCTTAGTGGAAACTTGAAATAATTTTTTAATTAAAAAAGCGCAACATCAGTTTAATAGAGTAGGGTGTAAGCTTTGGTGCGGATCCCAAGCAAACATAAAATCCCTAGGGGATCCGCACCAAAAAAACCCAGTATAATACGTAAATATATGGTAAAATTGAAAAGAAGATAGGCGAAACACCCAAAAAATAGTTTATTCTACTAGATTCAGGAAATGATTTCCCTTTTATTAGGAGATTTTCGCTGTCGCACACTATATGAGTGCGTGGATTGAAATGAAAATAATACGTCGAGGACAGCCGGCGGCGATGTCGTCGCACACTATATGAGTGCGTGGATTGAAATATGATCGAAGAAGACGTTACATGCGTCGATGCAGTCGCACACTATATGAGTGCGTGGATTGAAATGTGGATTTAAC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 70236-71940 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000329.1 Bacillus sp. VT-16-64 NODE_364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 70236 32 100.0 36 ................................ GAAAATAATACGTCGAGGACAGCCGGCGGCGATGTC 70304 32 100.0 33 ................................ ATGATCGAAGAAGACGTTACATGCGTCGATGCA 70369 32 100.0 36 ................................ GTGGATTTAACAGTGACTTCTCCGCCTTACGATAAC 70437 32 100.0 34 ................................ GACGTAAGTACGGCTCGAATTCGAAACTATAAAC 70503 32 100.0 36 ................................ GTGCCTAGCGATGGTATACCGTATATCTCCCTCGAC 70571 32 100.0 35 ................................ CGTTAAGTAGCCTCCCGCTAGGAAGTTTCGACTGT 70638 32 100.0 38 ................................ AGCTCAACAAAGTAGGTCCGGCCTCCAGGAAGCAGGAC 70708 32 100.0 35 ................................ GAACGGAATCATCTTCGATTGTAAATAGGAATGCC 70775 32 100.0 34 ................................ ATAGACGATAGATTGCAGACGAACGACCAGTCGG 70841 32 100.0 37 ................................ CCGCCTACTATTACTCGCGCTCGCCGCGGTCATAATC 70910 32 100.0 34 ................................ TGGAAACTTTTGTTATTTATGATGAAACAATAGA 70976 32 100.0 35 ................................ ACAACGAGGGCAAACCAATTCACCATCTATCATCA 71043 32 100.0 35 ................................ ACCCGTTGCTGTATTTGAGGATGAGCCTAGTGAGT 71110 32 100.0 36 ................................ ATTTACTGCTACTCCTGGATAAATCAAATCAATATC 71178 32 100.0 34 ................................ ATGGCACTTGTGATTTACCAATGTGTAGCAAGTG 71244 32 100.0 33 ................................ CTCTGCAAAGTCGTCTTCTGCCCTAGTCTTACC 71309 32 100.0 35 ................................ TTTTAATGACTGCGACATCATGCATCCCAGCCCTA 71376 32 100.0 35 ................................ TAACAAGTGAGTAAAATAGTCATATCTGGATTCCT 71443 32 96.9 34 .......T........................ GTTTGAGTTGGCCCCATATATACTTTTGGCACGT 71509 32 93.8 34 .....T.T........................ TCTTGGTACGGTCAAAATATTGGAGTACATTACC 71575 32 96.9 35 .......T........................ GTGTGGAGTCCAGTCGCTGTCTCTTATTGATCGTC 71642 32 96.9 35 .......T........................ GGTTGCTCTGGCTGTGGCTCCTGCTTCGGTTGCTC 71709 32 96.9 34 .......T........................ ATAAAACCGGTAAGTCGGATAGGCATACGTCGAT 71775 32 96.9 35 .......T........................ TCGATGAAGCGCAGAAACGAAGCAGAGGCCGGATT 71842 32 96.9 35 .......T........................ TGTATCAATTAAATCAGATAATTTGCCACTTGTAT 71909 32 84.4 0 .......T...C..C........A.....T.. | ========== ====== ====== ====== ================================ ====================================== ================== 26 32 98.4 35 GTCGCACACTATATGAGTGCGTGGATTGAAAT # Left flank : TGGTAATGATGTCGCACTCTATATGAGTGCGTGGATTGAAATTATTTATACGAATACCGGTTTGACGGGATCGGCTAAAGTCGCACTCTATATGAGTGCGTGGATTGAAATCTCGATAGAGCTTCTCTTAATCAAATCCGCCTGCGTCGCACTCTATATGAGTGCGTGGATTGAAATGGCTTGGGTTCAGGTCTGGATGAGTACTTGGTTGAAATATACTGGGAAAAAAGAGGGTTGAACGTTTGATTCTAGGGATCTTAGTGGAAACTTGAAATAATTTTTTAATTAAAAAAGCGCAACATCAGTTTAATAGAGTAGGGTGTAAGCTTTGGTGCGGATCCCAAGCAAACATAAAATCCCTAGGGGATCCGCACCAAAAAAACCCAGTATAATACGTAAATATATGGTAAAATTGAAAAGAAGATAGGCGAAACACCCAAAAAATAGTTTATTCTACTAGATTCAGGAAATGATTTCCCTTTTATTAGGAGATTTTCGCT # Right flank : TCTTTACTAAAATATCCGCTTCTAAATAATGAGTCATGTTAACCTCCATTTTTCTTAAACGCCGTTTCCAGAACACACAAAAAAAGCCGTGAATGAACCACTTATCAGGTTCATCACGGCTTCCTGCAATCTATAAACTGTTTGACAATAAAGCGCAAACAGTTGTTATAACGGCATAATAATGATTGAGTTCGCTCATTAAATCATGATACTTGAAAAAAATCGCCTGGCACACTAATTCATCTACAGCAAGTTTTCAATTATCGATGTTATTCAATTTATGATGAGCGAATAACTGTCAAGAACACTGCCTTGTAGGATACCTCCACGACCATTATTTTAAAGATATCATTTAAAAATCAAGCCAAGTTTTACGTTATCGGATTCAGAAGCTCTCCCTGCTTTGCTAATGATTCAGTAGCTTTTCTCCGCAAATTATCACTACTACTTTTGCTTCCTTAGCTAAATCTATCTTTTACTTTTCTCTTCTATTCTATAAT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACACTATATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 213-908 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000084.1 Bacillus sp. VT-16-64 NODE_90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 213 32 100.0 36 ................................ GGATACACAAACGTCTTGCTGATAAACAGCGCGAAA 281 32 100.0 33 ................................ ATCGATGTGGTGGACGTCTAAATTTTTGCTATT 346 32 100.0 35 ................................ ATAACCCAGCGTTACATCTCCGTGAGGTCTCTTAA 413 32 100.0 35 ................................ AATACGGATCTCGTCCGTAGTATTGACACGGACAA 480 32 100.0 35 ................................ ATATGCTCCACGTACCTGGTCTGGATCTCCGACAT 547 32 100.0 34 ................................ ATCACGACCATTGCGAACTTTTCGCACGTCAACT 613 32 100.0 33 ................................ AGCACTGTAGTAGATTGTCCAACACATATAAAC 678 32 100.0 34 ................................ ACCCGTTGCTGTATTTGAGGATGAGCCTAGTGAG 744 32 100.0 35 ................................ GATGCTCAAGGTAACATGAAACCTTTGCCAAAAGT 811 32 100.0 34 ................................ GTCTGAATCGTCACCGAATCGCAAAGTGCTTTGA 877 32 96.9 0 .............................G.. | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 99.7 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : AGTTCTTCTACAATTCTAAGCGGATCCATTCGACTTTGGGCTACTATACGCCAAATGAATTTGAGCAAATGTATGGAGATTCCGCAGCCTGATTTTACCGCCATAAAAAAGTTTAAATGCCCTTTATTTAAACTTTTTTATGACGGCCACCAAGCGAAAGCGCGGTAGAAAATCTGTGTCTACTTTCTTGACATAGTATCAAAACGGCTAACG # Right flank : TCGCTGTGTCGATCCTTTTTTCCTTTTAGCCACTTCCTGTAATCGCCCAAGGGTTCCGGATATTGTTCCAGCTGCTTGATCTTTCGTCGGCGCTCAAATCAAACCGATTTGTAATGAAATGTAGTACATTCCCTTTTGAATCCATCACTTTTAGAAAACGAAAGTAATTTTCAGCACGGTTTTGAGTCGTACCAATCAGCACCATTTGATCCGATAAAACAGTCGTATCCTCGGGCAATTTAAAATTGTAAATTTATCGCATGGCAGCGTTTTTACGTAGTCTAGATAGAAAAAAGTAGCCGTCATCAGTCATGCGGTCAAAGCGCTCGTAGTCCAGATAGCCACGGTCAAACACATACATGCACTCCTTGTCATCCACCATGATTTCAAGCTGACCACGGTCGTGTTCTTTTGCCGTTGTTTGGACGGCTTTTTCGGGATAGGAAGTTCCTTTTTCCATAAATACAAGGCGTAGATGCAGTTTCACACCGGCTTTTGTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4682-197 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRF01000153.1 Bacillus sp. VT-16-64 NODE_166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4681 32 100.0 36 ................................ TCCCCATCAGCCACAAGCATGTATAATCCGATTGCG 4613 32 100.0 34 ................................ TGTCATGGCCAGCTCTCTTTGATTTTCCTGCACT 4547 32 100.0 33 ................................ GATTGACAGGCGCCATGTGTCACTTTTCTCCCT 4482 32 100.0 36 ................................ TGGTCGAATTATCATGGCGATGACTACGAAACAACA 4414 32 100.0 35 ................................ GAAGCAATCCCGAAATTAACTCCGGAGATAGGCGA 4347 32 100.0 33 ................................ CGATAACTCTACGTTTTGAGTCCCGGTAAACAT 4282 32 100.0 34 ................................ TCCATTTTTGCAGTTGGGTTTTAATCTTGTTTAT 4216 32 100.0 33 ................................ ATTTTCTCCGTAATCGAGCCACCGGACTAAATT 4151 32 100.0 33 ................................ TTCTGGCGAGTTAAATATTTCGCGATTATCACC 4086 32 100.0 37 ................................ ACGCTTCGTCTTTTCGTGATCCTGCGCCCATGTTTCG 4017 32 100.0 35 ................................ GTCCATAAATGAAGCTATTACGCAAAGTGTTCGCC 3950 32 100.0 36 ................................ AATGTATCGACCTCCTTACTCTTATATACCCGACAA 3882 32 100.0 35 ................................ CGCCTGACGTTCCGTTAAACCCGCGAGGACTATCG 3815 32 100.0 35 ................................ GATATGCACATGCTTGACCGCGAAGGCGTTACGTT 3748 32 100.0 35 ................................ TCGATGTCCTCCGCCCATTGTCGTAAGTGTGGGAG 3681 32 100.0 33 ................................ GCCTTAGCTACGTCTTTAACGTAATTATTCGAC 3616 32 100.0 34 ................................ GCGTCCCATCCGATGTCCGTTACAGTGGCGAAGT 3550 32 100.0 34 ................................ AATATTCACTAACATTCTAAAAGGTTCGAGATGC 3484 32 100.0 34 ................................ CTGCAAGTACGGATTACGAATCGTAACCTTTGCC 3418 32 100.0 35 ................................ ATAGACGATAGATTGCAGACGAACGACCAGTCGGA 3351 32 100.0 34 ................................ CGCCTGCTTTTGCCGTCGATATTCCGCCTCTAGC 3285 32 100.0 35 ................................ TCATGAAGACTTTGAATCTGACGAAGACTATTTCG 3218 32 100.0 36 ................................ CTTGAAAAATATCACGAAAGCTTCGAAAGAACTATG 3150 32 100.0 34 ................................ CTTTTCCTCGGTAGTACCCGGCGTGAAGCCGAGC 3084 32 100.0 35 ................................ CAGATTTGTAGAGTTTAACCCACGGACCTCAACCG 3017 32 100.0 35 ................................ CACGATCCATGTAGATATGAGAAATGCTTTCTGTC 2950 32 100.0 36 ................................ GCTTAATGAATCAGTATTTTTTATCAACTCGTCAGC 2882 32 100.0 34 ................................ GTTGATGTCATCATCTGGATATTGTGTTTTTAAA 2816 32 100.0 34 ................................ CGCCATACGCCTCGTCCGCTGATTGTCCTAGAAT 2750 32 100.0 36 ................................ GCTGCAACTATTGCAGATCGTTCGGAGCTACAAGCA 2682 32 100.0 35 ................................ CTATCAATCAGGGCCGTTATGTGCCGAGAAACTTT 2615 32 100.0 35 ................................ ATTACTCTCTTGGTATAGCTCTTGTGTTGTGAACG 2548 32 100.0 34 ................................ CTTTAACGACCAGGACGAATAAAGCCAATTCATG 2482 32 100.0 34 ................................ ACTTTTAAGTGGTCTGAAGATATGATTCCTCATA 2416 32 100.0 34 ................................ CTACAATTTTGGGCCTTAATAAATACAAGTCACG 2350 32 100.0 35 ................................ CGCCGGAAGTGGTGTAGCTAAGAGCGGGGAGAGAG 2283 32 100.0 35 ................................ ATATGTACAGTAGTACCGCGGACACATATAGAGGT 2216 32 100.0 34 ................................ ATCTACCGTTTCCCATTCATCCTCACTTGCTATT 2150 32 100.0 33 ................................ TATTAAAGGTGGTGCCAGCTCCGGCATATTATC 2085 32 100.0 33 ................................ ATCTTGAAAATCACTCGATTTTTCATTTGCCAA 2020 32 100.0 33 ................................ TATTCCAACACAGAACATAGAGGAGTGATTTTG 1955 32 100.0 33 ................................ GTCTTTTTTAAAAACAGTGGGTTGCTTTGTTGA 1890 32 100.0 34 ................................ CTTTCATGTATACCCGGAGTGACTTCATTTGTTT 1824 32 100.0 36 ................................ TCTTTTAGTTTTGTTTAGTTTATTAATGGCGACAGG 1756 32 100.0 34 ................................ AATTGCAATCGAGATTTGCATTAACAGCGACGGT 1690 32 100.0 33 ................................ CCGGCCAAACGCGCCGGATTGTCTTTTGTGTAC 1625 32 100.0 36 ................................ GAATCTACCAATCGAAGATATGGCGACGGTATTTGA 1557 32 100.0 34 ................................ TTTGATTTATATTCGGAAATTCATTGAAAAACAT 1491 32 100.0 34 ................................ ATGGGGCTGAAAGTGTTAGGTACGGGATGAAAAA 1425 32 100.0 36 ................................ TTTTGTGCCAATCAACAAGCATGCGATCCAGGTACA 1357 32 100.0 34 ................................ ACCTCCTTTTCCAGCTCGTTAATGCTCCCTTATA 1291 32 100.0 36 ................................ CAATAATGAGACGGCATATCCGCCCAGACAGAAAAC 1223 32 100.0 35 ................................ TGCTAACTGTGAAGTAGTTAATACTCTTTGATTAT 1156 32 100.0 35 ................................ ACCAGTTAAGGAAAAATAATGTTTACCTTGAACGT 1089 32 100.0 33 ................................ TCTTCGTCATCAGTTTTGCCGTGACTACATATT 1024 32 100.0 34 ................................ CGTAATACGACGATTGCCTATTTCGACGTATTCG 958 32 100.0 34 ................................ CGTATCCCCTGCCGCATATACTAGCGCCACATCT 892 32 100.0 34 ................................ CTTTATCGTGTCCGACAAGTCCTTTTACGTTTTC 826 32 100.0 33 ................................ GTATTAGTTTTGGCTCCGAGTTCATCGTTTACG 761 32 100.0 34 ................................ TGAACTTGATTACTTAATACAGCCACCTCATCCT 695 32 100.0 34 ................................ TATACCGGGATTCATATTACAACAAAGAATCCAA 629 32 100.0 36 ................................ CCAAGGTGCAGCATTAAAGCCTACCTTAAAACTGCC 561 32 100.0 33 ................................ AGGTAAAACACGTTTCGGAGTTAAGCCAAATTT 496 32 100.0 36 ................................ ACTTGTCCTGTACATTATACCGCCAAAAAGCGCCGG 428 32 100.0 34 ................................ GTAGATTAAACAACATTGAATCCAATATAAAAGC 362 32 100.0 35 ................................ CGGTGACTCTGGAAATCAGGGAAACGACTGAGGAA 295 32 100.0 35 ................................ GAAAACATTATCGAAGAATCGAGCGAATGGACCAC 228 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 68 32 100.0 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TTCCAAAGCAAAGTAACCGAGTAGTTTGAAACCATGCCGGCAAGTGGACTGGGGACAATTCATCGTCGATTGGAATGATAAGCAGATCATACTATTTTGCAATAAAACAAGTGAAACAACTTTAATAAAACGTTCTTCTTCAACTGAATGCGACGATTAAAATTGTTAATGCGGGAAATGTAGAGAAACACCGGTCAACTTACATGAGAGCTGGATTGTGAACAGAATTAAAAAAGGATTGAATTTTTGATTCTGGGACTAATGGAAGAATTGGAAATTTTTTTAATTAAAAAGAGCAGCATCCGTTCGTATAATATAACGTAAACTTTGGTGCGAACCCCAAGCGAACATAAAATCTCTAGGGGACCCGCACCAAAAAAAAACAGTATGATACGAAAATATATGGTAAAATTGAAAAGAAGATAGCAAAACACCTCCCAAAAACAGGTTATCCTACTAGATTTTGGGAGCAATTTTCCTTTTATTAGGAAATTTTCGCT # Right flank : TGTACCGAAGAATCCGTCGAAGAAAAATGATGCTAGACTAAAAAGTGGACACAGATTGTTATAATAAAAATAAATAACAATGATGAGGTGTCTATATGACTAAAGAAAATGGAAGACGTTATGATGAAACGTTTAAAAAAGAAACAGTAAAGTATATTCTAGAGAACAATAATCCAGTAGCACAAATAGCTAGGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //