Array 1 23237-25742 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQGB01000041.1 Pasteurella multocida strain 3483PM isolate swab isolate 1 contig_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 23237 28 100.0 32 ............................ TCTGAAAGTTCCCCGTTTTCATTGCGAAGTTC 23297 28 100.0 32 ............................ TTGTGTAGCCACATAATTTGCATAGTACTTAA 23357 28 100.0 32 ............................ TTGTAGAGGGTCATTTCGGTCTGTGGGGTCCC 23417 28 100.0 32 ............................ TAGTTTCGAAGTCCCCGATTTTCGTGCAAGAT 23477 28 100.0 32 ............................ TATCTCGAATCTCTTTGTCCACCTGTGAGAGA 23537 28 100.0 32 ............................ CACTTCTTCTTAGTCTCAAGGATTACAAAGTA 23597 28 100.0 32 ............................ ATACTGCGACCCTCAAGACCGCTTTCCCCTAT 23657 28 100.0 32 ............................ TATTGACCTCATAGGTTGCTGTATCGTTATTA 23717 28 100.0 32 ............................ CGAAAACTTCGATAAGAACACACATGAACTCG 23777 28 100.0 32 ............................ TTGCGTTGTTGTTAATCTTATGATAAGCACTA 23837 28 100.0 32 ............................ TTGTCAACAATTATTTTAAAAAAAATTATTTT 23897 28 100.0 32 ............................ TTTAATAAATCAGTCGATTGAAAATAATTTTA 23957 28 100.0 32 ............................ ACGAGTGGGACACTACATAGAGCTAACAAAAG 24017 28 100.0 32 ............................ TTGTGTTGTTGTTGTTGTTAATCTTTATGATA 24077 28 100.0 32 ............................ GCGAGTGGGACACTACATAGAGCTAACAAAAG 24137 28 100.0 32 ............................ AGTCTTTTTAGTTTGTCAACAATTATTTTAAA 24197 28 100.0 32 ............................ ATTTTAGTTTCCTTGTGTTGTTGTTGTTGTCT 24257 28 100.0 32 ............................ TAAGGAGGTATTAGAAGATGAGCGCGGATAAC 24317 28 100.0 32 ............................ GAGAGTGGGACACTACATAGAGCTAACAAAAG 24377 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCAGACCTCATCCCT 24437 28 100.0 33 ............................ CTGCCCGGAAGCCCGCTTTTAATGCTCTAAAGC 24498 28 100.0 32 ............................ TAAAACATTATACAATTAAATTCATGAACACA 24558 28 100.0 32 ............................ TGTAAGTGGAATTTTAACATAATACGCTCCCA 24618 28 100.0 32 ............................ CTTAATTTGATAGAATTCTTTGAGAGTCCAGA 24678 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 24738 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 24798 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 24858 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 24918 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 24978 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 25038 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 25098 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 25158 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 25218 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 25278 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 25338 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 25398 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 25458 28 96.4 49 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGAAAT 25535 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 25595 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 25655 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 25715 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================================= ================== 42 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19950-28078 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQGB01000038.1 Pasteurella multocida strain 3483PM isolate swab isolate 1 contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19950 28 100.0 32 ............................ AAGAGCATAAGCTTGCGGTGGAGAGAGTGGCG 20010 28 100.0 32 ............................ AAGTACAAATTAAGTACATGGAGAAGACTAAT 20070 28 100.0 32 ............................ AAAGTGTTGCAACACCAGTTGCTGGTCTTTTA 20130 28 100.0 32 ............................ AATCTTTAAATTGGTCGATTTTAAACCCGCTA 20190 28 100.0 32 ............................ ACAAAGCCAACCTCAAGAGACTAAAGGTTTTG 20250 28 100.0 32 ............................ TTTCACGTCTTCATCGCGTATGGCACAAAGAA 20310 28 100.0 32 ............................ TGCACAGTTAGCACCGTGTACTTTCAACCACT 20370 28 100.0 32 ............................ GCGATGAAGACGTGAAATGCTTACTAGATACT 20430 28 100.0 32 ............................ AGTTCGTATGGTTCGCCTAGACGGAGAGTCTT 20490 28 100.0 32 ............................ GGATTCGAGATGACTTCTCCCTGTTCGATAGC 20550 28 100.0 32 ............................ TTTCGATTCCCTTAATGTAGCATTTACCATTT 20610 28 100.0 32 ............................ TTCTTGGCTGCGCTATACTTAACGTAATAACT 20670 28 100.0 32 ............................ AAGTCAAAACGACAGCTTTCGTGCATTTTTGG 20730 28 100.0 32 ............................ ATTTGAGAAGGTAACCAACCATTCTGTACCCA 20790 28 100.0 32 ............................ TATACCCCACAAGGCATTAATGTGCTAAACTT 20850 28 100.0 32 ............................ GCCTAGCGAAGTTGCTTCGAGATGAATATACT 20910 28 100.0 32 ............................ AACGGCTCACCTTGGGGAACCACCTGAAAAAC 20970 28 100.0 32 ............................ TATAATATATATATCAGTCTTAACTTGTCAAC 21030 28 100.0 32 ............................ TTGATTGTATCCGTGCACTGTAAAATCATAAT 21090 28 100.0 32 ............................ AGTCAAGGTTGTAAGGAAAGTAAATGCGTTCA 21150 28 100.0 32 ............................ TTCACCGTCAGTAAACTTAATGGGAGCTGATA 21210 28 100.0 32 ............................ ATTTCAGTTTCCTTGCGTTGTTGTTGTTGTTA 21270 28 100.0 32 ............................ TTGATACCCACCACCATACGTTTAATCAAAAC 21330 28 100.0 32 ............................ GTTGGTGGGCTGAACAAGAGTCACCATTCCAG 21390 28 100.0 32 ............................ CTAAAGCTTTGCCGTACATTAAACAAATAGAC 21450 28 100.0 32 ............................ TGTGGCGCATGAGACCATTCTGAGACCACATA 21510 28 100.0 32 ............................ AATCAGAGTAACCCTAACGAATTTACGGCTAA 21570 28 100.0 32 ............................ ATCAGCGACAACTTGTTTCTTTAGGTCGTTAT 21630 28 100.0 32 ............................ TGAGCGAAATACCCCAGTTCGACGTGCTGTGA 21690 28 100.0 32 ............................ GGATGAGTTATTAACGATTTCGTTTTCGAAAA 21750 28 100.0 32 ............................ GCTTTGGATTGTCCATTAATGTGGCACTCATT 21810 28 100.0 32 ............................ TCTTTCTGTCCTTTTGCTCTAATCTCCTCTAG 21870 28 100.0 32 ............................ TTGTGTTGTTGTTAATCTTTATGATAAGCACT 21930 28 100.0 32 ............................ TTTAGCTTGTCAACAATTATTTTAAAATTATT 21990 28 100.0 32 ............................ TCCCATTAATTAGTTAATTAAGTCATAGTGCT 22050 28 100.0 32 ............................ TTTAGAAGGCTCTTGGGATTGAAGTGTCTTAA 22110 28 100.0 32 ............................ TTTATAAGTTGACATTACGAAAACAGCCTCAT 22170 28 100.0 32 ............................ GATTAGAAAGCGAAGCTTGTTTTATCGAGATG 22230 28 100.0 32 ............................ ATCTCCGCCACTCAAAAAATCTTCTAAATAAA 22290 28 100.0 32 ............................ GTTGGTGGTCTGAACAAGAGTCACCATTCCAG 22350 28 100.0 32 ............................ ACAAGGCGATGACATCATGAAAGGTTGTCTTG 22410 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 22470 28 100.0 32 ............................ TCTTCTTATTTATTATCTGCATCTACTGTCTT 22530 28 100.0 32 ............................ TTGAAGCCATCGAAGTGATTGCACGTAACTGT 22590 28 100.0 32 ............................ TTAGTCGCTTCTTTTTTACTTTGTGGAGACTC 22650 28 100.0 32 ............................ AGTCTGTTGTTAAATCTTTACAAGAACGGGGC 22710 28 100.0 32 ............................ TCATTGTTTAAGTGAATCTTTGTATCCACTAG 22770 28 100.0 32 ............................ ATCGACTTTGAGTTGTCCTGATTTTATATGAC 22830 28 100.0 32 ............................ AGCAGGTCGCTTTGGAACTCGAATCAGTCACG 22890 28 100.0 32 ............................ AATCTCCTGTTCTCGCACTGCTGAATATTTCA 22950 28 100.0 32 ............................ AGAAAACTTCGATAAGAACACACATGAACTCG 23010 28 100.0 32 ............................ TTCTGTGATGACTATTTTCTTACCACCATTCC 23070 28 100.0 32 ............................ TATCCGTCACCTTCACCATGTCGTAATGCACA 23130 28 100.0 32 ............................ AGATGAGTAACTAAGGTTGACTATCTGTCGAT 23190 28 100.0 32 ............................ TATGAGCGTAAAATCCACATTAACATTTTAGG 23250 28 100.0 32 ............................ TTTAAGTACAAATGAATATGATGACTTAGGGG 23310 28 100.0 32 ............................ ACAAAGTTTGGCTTTCGTGACCAAATTTTAGA 23370 28 100.0 32 ............................ AACTATCCCGTATCACTAAAGATAGAGGAGCA 23430 28 100.0 32 ............................ AGATGAGTAACTAAGGTTGACTATCTGTCGAT 23490 28 100.0 32 ............................ GCATGAAGAAAGAAGACTTATGGGGTCTAGTT 23550 28 100.0 32 ............................ GTTTAATTCAATCCCCCCAACACCCGAGAGAA 23610 28 100.0 32 ............................ TTGTCCGCTTGTCCTAGTCACTTGTAGGCTAC 23670 28 100.0 32 ............................ AATTCATACACGTAAGAATCGGAACGATGTTT 23730 28 100.0 32 ............................ TGCACAGTTAGCACCGTGTACTTTCAACCACT 23790 28 100.0 32 ............................ TTTAGTCATCGTCTATGATTGTTGACTTATTG 23850 28 100.0 32 ............................ TTGTCACAGACGACATCTTTTGTCTCAACGCT 23910 28 100.0 32 ............................ CGCTTAGGAGTGGAATTGTTTGATGAAAACAA 23970 28 100.0 32 ............................ TGTTGGTAAAAAGCTTACAGAGGTCTTGATTA 24030 28 100.0 32 ............................ ATTATAGCGGTGGGGACATGGCGGACTATACA 24090 28 100.0 32 ............................ ATACATGAAAGAGTTAGGGAGAACACAAAAGG 24150 28 100.0 32 ............................ AATTGTTAAGAACGTTATAAGCGTCTGTTTGC 24210 28 100.0 32 ............................ ACTCGATAACAAAGAGGAGTCTTTAGTAGGCA 24270 28 100.0 32 ............................ TCTACAAGGAACTAGAAGACAATCGTGGTTAT 24330 28 100.0 32 ............................ AATCAGAGCTATGCTGTTTGTAACTACGGGCG 24390 28 100.0 32 ............................ TATCTCATACGTCTGGTATTCAAAGCGAGAGG 24450 28 100.0 32 ............................ ACGACTTACAGACCATTCAGGGCATCTTAAAG 24510 28 100.0 32 ............................ TCATAAGTACTCTCAAAGTTACTCAACAAGAC 24570 28 100.0 32 ............................ TTGTGTTGTTTGTTAATCTTTATGATAAGCAC 24630 28 100.0 32 ............................ TTTTTGATAAACATCCGACCTTAAATGAGAAG 24690 28 100.0 32 ............................ AACAATGAATGCGTTCTTACGCTGATTCATCT 24750 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 24810 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 24870 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 24930 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 24990 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 25050 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 25110 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 25170 28 100.0 32 ............................ TCCCTCCAAACAACCTCGTCTAATTAAATTAT 25230 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 25290 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 25350 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 25410 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 25470 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 25530 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 25590 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 25650 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 25710 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 25770 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 25830 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 25890 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 25950 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 26010 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 26070 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 26130 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 26190 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 26250 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 26311 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 26371 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 26431 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 26491 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 26551 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 26611 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 26671 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 26731 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 26791 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 26851 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 26912 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 26972 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 27032 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 27092 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 27152 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 27212 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 27272 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 27332 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 27392 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 27452 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 27512 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 27572 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 27632 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 27692 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 27752 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 27812 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 27872 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 27932 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 27992 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 28052 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 136 28 99.8 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //