Array 1 1879217-1880894 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLX01000010.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL02073 2014LSAL02073_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1879217 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1879278 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1879339 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1879400 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1879461 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1879522 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1879583 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1879644 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1879705 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1879766 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1879827 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1879888 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1879949 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1880011 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1880072 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1880133 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1880194 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1880255 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1880317 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1880378 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1880439 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1880501 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1880562 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1880623 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1880684 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1880745 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1880806 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1880867 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1897153-1899134 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLX01000010.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL02073 2014LSAL02073_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1897153 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1897214 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1897275 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1897336 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1897397 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1897458 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1897519 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1897580 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1897641 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1897702 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1897763 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1897824 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1897885 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1897946 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1898007 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1898068 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1898129 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1898190 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1898251 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1898312 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1898373 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1898434 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1898495 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1898556 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1898617 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1898678 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1898739 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1898800 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1898861 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1898922 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1898983 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1899044 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1899105 29 96.6 0 A............................ | A [1899131] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //