Array 1 184903-185195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXLR010000001.1 Clostridioides difficile strain HC208 NODE_1_length_224573_cov_24.9589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 184903 29 100.0 37 ............................. ATATAGGTATGCTTTTATTGGATATTACAATACTCCT 184969 29 100.0 37 ............................. AAGGTGCAGATGTTACTACAAATGATACATGGGAAGA 185035 29 100.0 37 ............................. GTAGGTATTATAAATATTTAATAAACATTTCTTTTAT 185101 29 100.0 37 ............................. ATTGCAATGCTTCATCAACTATTACACATAGTATCTT 185167 29 86.2 0 ......C........AG...T........ | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 97.2 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATAGAGTGGAGTTCATGTACAAAAGATTATCCTCCCAACGATTCGAAGGGAGGTGAGTTCATGGATAACTTTTTGTTTAATGTTTTAGCTAGTTTAACAGCTAGTGTGGTAGTTTATTTAATCAGTAAACTATTCAAAAAAGCAAAAAGCCACTCTCGCACAAAGAGTGACTTACGAGTTGAATTTAAATTTATATTTAAATCCAAAAAATAAACTCTGTTTATGATGAACTCCACTCTAACGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTAGTACAGATATTCAAAAATAATATTTTTTTGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAGATATAAGGCATTGAGGGTATGTGATAAATGTTATCATTTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATATGTGTAGGTATTAGAAATACTTAGTTTATTTTGGG # Right flank : TATTTTATTAGCTTGTCATTTTATAGATTAAGGGTTGAGTTTTATATTGACTATGTGTACAAGAATAGAGTAGTTTGAACTACTCTATTTTTTATTTAAAAGTATATTTTACATTAATTTTCTTCTTCTTAACTCTTCTTCACAATAATATCGACACAATTCTAAAAAATCTATTTCTAAAGCAAGTGATAAATCTATGATTGTAGAAATATTAATATTTTTGTATCTCTTATTTTCCAAATCAGAAATATATGCTCTACTATAATTCGCTTTTTCTGCTAATTCGTTTTGAGTCATACCTCTTTCTTTTCTTAGTTTTTTTAGCATATATAAAATCTCCTTTTATCAAATTTTATATAAGATAATATTTGTAGAATTATAAAATATATGATGGTATTAGCGTCATTATTTTATGGAAATTTATGGTAGAATATAGTTAAGAATATTAAGAAAATTTATTTTGAAGGTCTATAAATACCGACCAAATAATTTGTAAAAAC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 16883-16458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXLR010000032.1 Clostridioides difficile strain HC208 NODE_32_length_45463_cov_15.9676, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 16882 29 100.0 37 ............................. GTAAAACAAGGCTCTCGTTTACTTAATTTCATATTAA 16816 29 100.0 37 ............................. AACTATAAAAGCGGTGGTGAAGCTTTAAAGTTTTATC 16750 29 100.0 37 ............................. ATAAGAGTGGTTTAAGAAAATAAGTTATTTTTCAAAA 16684 29 100.0 36 ............................. AATGAAAATGATGTCTATATAGACCAATTAAGCTGG 16619 29 100.0 38 ............................. CAATATATCTCTCAATAAAGAGTCCCATCCAGATATTA 16552 29 93.1 37 ................T...........T AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGGA 16486 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 94.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGTTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGCATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGCTAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 13935-13509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXLR010000042.1 Clostridioides difficile strain HC208 NODE_42_length_32694_cov_18.0779, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 13934 29 100.0 37 ............................. TTGAAACTTACTACACCAGTTTTAGTAGTTCCAGCTA 13868 29 100.0 37 ............................. TAATTTTTCACACCATGTAAATGTGTTTGTAAATAAT 13802 29 100.0 37 ............................. ATTGATATACCCCAACAAATTACACCTTGTAAGACTG 13736 29 100.0 37 ............................. TCTTTTTATATCTTATCTGTAATAAATTCTTCGTAAA 13670 29 100.0 37 ............................. AAAAAAGTACGTTTTTAGATGTTAAATCGTAGCGTGG 13604 29 96.6 38 ............................T TAAAATTGTGTTTTCTCTTTCATACACCCACTTCATTA 13537 29 89.7 0 ...................T...A....T | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 98.0 37 GTTTTATATTAACTATATGGAATGTAAAG # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGAAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATGATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTGTTGAGCTAAAGTGTGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATGCTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAATAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : GTTTTTTCTTATTAAATAAAGATTGAGTCACTTTATATTTAATAATACATATTCTAAATTGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGCATATGTATAATAGAAAAAGAACATTATACGATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGTATATCTACATACAGAAATTGATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 24642-26044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXLR010000048.1 Clostridioides difficile strain HC208 NODE_48_length_27853_cov_16.3377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 24642 29 100.0 36 ............................. TTTACAGTTAAGTTAGGATTATATTCTTCCTTAATT 24707 29 100.0 36 ............................. TAATAAGGTTAAGATATTAAATATTTGTGTACGAAA 24772 29 100.0 36 ............................. GAAACTGAAAGAAATCAATGGACACCTTTTGGGGGA 24837 29 100.0 37 ............................. TTTTTTACTGTTATCGTCATATTATTATTATCTACAA 24903 29 100.0 36 ............................. TTTGACATATTAAGTGATGTGGATAGAAGAATATGT 24968 29 100.0 36 ............................. ATGGAAAATTGTATAAGGAAAGAATTGAGAGATATT 25033 29 100.0 36 ............................. AATGATGACATGATTATAATAAATAATTTAGTTTTT 25098 29 100.0 37 ............................. TGATTTTGCAAACTATCCTTTTTCTTATTCTAAAACA 25164 29 100.0 37 ............................. ACATTATAGTAAAAAATATGTTTATGAAAAAATGTAT 25230 29 100.0 35 ............................. AGAATCTATTACTGTGGCATATGTAGAGTATTTGC 25294 29 100.0 37 ............................. CCAATAAACTTTAGAATAGGTATAGAAGATGCTATTA 25360 29 100.0 37 ............................. TCAAAGTAATGTTTAACTTTAGATTGATATAGCCATT 25426 29 100.0 37 ............................. AAAGATTTGAAAATACTTTTTGCGAAAGGTGAAGATT 25492 29 100.0 36 ............................. ACAAACCATTTTGGTAAATCATCATAACCTAATCTA 25557 29 100.0 39 ............................. AAGATGGGAGGATGATTATAATTAATTTGACGAACGTAA 25625 29 100.0 37 ............................. TTTATAAGTCAAAGTAAGTCTATAACATTCTAGTTTC 25691 29 100.0 36 ............................. ACTAATTGGATTAAACAAATGGATATAACTAAATTA 25756 29 100.0 36 ............................. TTATCTATTGCCTCTCTAGATGCTATTGTTGTTTCT 25821 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 25887 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 25952 29 79.3 35 ............TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 26016 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================= ================== 22 29 97.3 36 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : TAAAATGCACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTACAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 21871-22759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXLR010000045.1 Clostridioides difficile strain HC208 NODE_45_length_30675_cov_13.526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 21871 29 100.0 37 ............................. ATCTTAAATAATTTCTCGCTTTCTATAATTTTAGTTC 21937 29 100.0 38 ............................. ATATGGATTTAAATATCTATAAAGGCGAGGGTTCTTTT 22004 29 100.0 37 ............................. TTGGAAGATATATGTTAATGATTTATACAAAAGAAGT 22070 29 100.0 37 ............................. CGAGTTGTTAAAGGAGAAAATTTTTTGCTTGGTGATA 22136 29 100.0 37 ............................. TTGTTTGAATACGAGTATAAACATAGAAAACTTAACA 22202 29 100.0 36 ............................. AAAAATGCAACTCCACCAACTGTAATCATGAAAAAG 22267 29 100.0 37 ............................. AAAGATAATTTTTCTTTTTTAGTATTTGACATAGAAA 22333 29 100.0 37 ............................. GCATCTACTTTTACAAGAATTGGTTTTGAATTTAATA 22399 29 100.0 37 ............................. TCGCTTAGAAACACTTTAATGTTTCCATTGTCATTTA 22465 29 96.6 37 ..........T.................. ATTACAGTTGATAAGAAACAATATGCAGTTAATGTAG 22531 29 100.0 37 ............................. GCCATATACATATTCACATATTCCAAAAAAACTACCC 22597 29 96.6 39 ......................C...... CAGGTAGTAAAGTAGAAAGAGCAAAACCTGCTTCGGCAG 22665 29 100.0 37 ............................. ATAATTCTTCCTGAGATATTCAGTTTTTCACCCAATT 22731 29 96.6 0 .......................G..... | ========== ====== ====== ====== ============================= ======================================= ================== 14 29 99.3 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : ATGATATGTTAAATAATGATACAATTAGTGTTGTGCCTGAATGTCTTTTAGAAGAGTATAAGTTCTATATTGATAAAAAAATGTATTTAGAAGCGAGTTCATTATTTGTAAATGTATCTGTAAAAAGATACAATTATAATAAAAAGATGTTTTATGAATGTGGAGATATAGTCGTTACAAGTTATAGTTATAATGATAAACTAGGTCTAATATTTGGTTAGATTTTTAATTAAATATTAGATTGTTAAGAGAATGATAGTATAACTAATTAAAATATTTTATTGGGAATTTGTTATAATTTATATCTACTACAAGTTTTATATGTTATAGTAGAATAATTTTGCAGTGAGCGAAAAATATGTGTGAATGTCTGTGAGCTAGTGATGGCAAGGTTTATAACTGTATTTTTATTTTTAGCTAAAAACACTACTGGTGGCTCACTGCAAATTACTTATTTTAATAACCCTACAAGTGTTGGAATTACTATAGTTTTATTTGGG # Right flank : TTTACTTATTCATTAAAAAACTTAACTAAGAATTTGATTTATATTATTGAATTAGCAAGAGTCTTGAAAAGTAGAAAATTATACCCCAATAATACCCCAACTACAAAAATAAACAATAAAAAACAATCAAAAAAATTGCTCTAATATCATAACTAAATAGCTATATACCTACACTTACGAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTCTCCACCATTGAAATCTTCGAATACCTATATCCAATTGGATATAGGTATTTTTATGCATTTCTAATTTAAATATTATTGATAAATATATTTAAAAAGTGTTAACCTAAAGTGAGGAATCTAAATAAAAATATGATATTAGGAGAGGTTATGATTACAATAGCAGTTTGTGAGGATGAAAAAGAAATACAAATTGTAATAAAAAATCAAGTTGATAATATATTAAAAAATACAAACAAAGAATATCGAATTAAAAAAATATAGCTCAGGAGAAGAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 16-503 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXLR010000055.1 Clostridioides difficile strain HC208 NODE_55_length_24916_cov_19.6192, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 16 29 100.0 35 ............................. AAACTAGTATTCATAAGTTTTTCAGCTTTTTTAGG 80 29 100.0 37 ............................. GAAATTTACATTAAATTTTTGCTTGAAAATCCGAATC 146 29 100.0 37 ............................. ATGCCAAAATCACTAAAGCCACTAAACATTCTATTTG 212 29 100.0 35 ............................. TAGTTATTTTCAATGTATTCTTCTATAAGTACATC 276 29 100.0 37 ............................. GTATCAGTTTCATAAACTGTAACTAAATCATCTGCTA 342 29 100.0 37 ............................. GTCGTTAAATTACTTGCTACTGCTTTGATTTCATTTC 408 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 475 29 96.6 0 .................C........... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 99.6 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : ATATTGTACATTACCG # Right flank : TTTTTATAATTTTCTTTTAAGGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAATTTATATTATATTATAAAAACAAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTCTGTCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACCCTAATTTATCTAAAGATTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3706-4258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXLR010000087.1 Clostridioides difficile strain HC208 NODE_87_length_8006_cov_16.2357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3706 29 100.0 36 ............................. CTTATAAATAGTAAAAGCTATGACCTAGTCATAGAA 3771 29 100.0 37 ............................. GTTAAATAAAAAGGGGGAACTAAATATGGCTAAGATT 3837 29 100.0 36 ............................. ATTTATTATCTTTTCAGCTAATTTAATTACTTGCTC 3902 29 100.0 36 ............................. TCAAAAACCATTCGACAGTTACAAAATAATTCTAAA 3967 29 100.0 37 ............................. TTACATCATCAATAATCGCTCTTATATCTCTACTATC 4033 29 100.0 36 ............................. CTCCGTGCTTCTATAGAATATATCAAGTCTATCAAT 4098 29 100.0 38 ............................. TCTAAAAGGTCACATATATTTATTAAATCTGTTGCCGT 4165 29 100.0 36 ............................. TTTGAAGTTGGTTTTACTAATTTTAAAATAGTTTCT 4230 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACACTTAAGTGACATTTAAGAAAAATATAATGCTTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAAAAGAACTAATAAAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGGTTGAGGGTGTATGATAAATATTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGTAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAGACTTAATGACAAGATATTAGATATAAAAAATGATTACCTTATAAGTAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGTCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3156-3582 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXLR010000096.1 Clostridioides difficile strain HC208 NODE_96_length_3583_cov_11.1534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3156 29 100.0 38 ............................. TCAAAATAAAATTTGTTCTTTCTTTAAATTCTAGCATC 3223 29 100.0 37 ............................. ACGTTTGTTTAAAGACACTGAGACCATCACCTTTAGA 3289 29 100.0 36 ............................. TATTGCAATAGTAGCGATGTAGAACACATAGGTTCT 3354 29 100.0 37 ............................. ATAGGAAATTTTAAATTCTCTATTTTTAATGGAACTG 3420 29 100.0 38 ............................. GGAATCCAATCAGCTAGGCATATATTTCTGGAGTCTTC 3487 29 100.0 38 ............................. TATGATATTCTTTATCATATTTAACTAAGAAAACATAA 3554 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 100.0 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAAACATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGTAATACAAAAGTTTTTATTTAAACTATGCTTATTCAGATAGGTATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGCGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTATATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGG # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 30436-30778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXLR010000017.1 Clostridioides difficile strain HC208 NODE_17_length_78962_cov_22.5884, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 30436 29 100.0 37 ............................. ATTATTATTCCGTTACTTTTAGAAATTACTTTTGCTA 30502 29 100.0 37 ............................. GTAATAAGCTTCAAGATTTTTATTATTCAGATGATGA 30568 29 100.0 20 ............................. ACTAAATTCAATGCTATCAC Deletion [30617] 30617 29 100.0 37 ............................. AAATTAGAGTCAGCTTTACATAAAGCTTTTGATAATA 30683 29 93.1 36 .................C..........T CATGATATAATTTTGAAGTTATCAGATTTTTTCAAT 30748 29 89.7 0 ...............T.......T....A | GA [30769] ========== ====== ====== ====== ============================= ===================================== ================== 6 29 97.1 34 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATGATATAATAATTGTAGCAAGGAAAATAAAATCGAAAAGCTAAGGGTGATTTTCTCATATAAACGCCAAATTCCAATATAGGAAGGAGGTGAATTTATATGTTAATTAACTTTTTATTGAGTATAGTAGCTGGTATTGTATCAGCTTTCATATATGACAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAATTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCCTTGCTATTATTATATCACAAATTGGTATAGATATTCAAAAATAATATTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCGATATTTGCTACAAAGTAAGGCTTAACGCTTGAAATATAAGGTGTTGAGGGGGTATGATAAGTGTTATCATTTGCACTACTCATGCTTCACTGCAATTTTAATAGTATTGTATATGTGTAAACATTGGAAATACTCAATTTATTTTGGG # Right flank : AAGTTGCAATGAGTAGAATAAGATTTCTATTTATAGCAACTTTTTTTACATAAATATATAAATAAAATATATTATAAAAAATATTATAAAAACAAGAAAATACAAAAAATTATAATTAAAAAAACGATTAATAATATACATGAATGGAAAAAACTACCAACTCTCTACAAATTTCGATTTTTTTATTACAATTACACTTTTTTTATTGCATTTGGAAAATAAAAGTATTATTATGTAAGTAAGATAATTATCAAAGACAATTCTGAATAATCGAAAAACGTTTCTAGAAATGAAAAAGGTATAATTACATAGTTTTTATTAAAAATTGTTGGGAGTTTTTAACTAAATATAAGAACATAAGTTCTAAAAATAGGGGGATGGTATAGTTGAAGAAAGACGAGTATTTAAAAAAGAATAAATCTAAATTAGAAAAGATTCTTAAAGCAGAACCTAAAAAGTATGAATACATAATAAAATTAATAGAAGAAGAAATGAGTAAA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 63356-63710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXLR010000017.1 Clostridioides difficile strain HC208 NODE_17_length_78962_cov_22.5884, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 63356 29 86.2 36 .AA..........A.T............. GTCGCTTTCAAAGAGTTTAACATTCCTGTTACTCCA 63421 29 93.1 37 A...........................T AGTTTATTTATATCTAATAGCATAGAGTAAAGTTTTT 63487 29 100.0 37 ............................. TTAGCTACTTGGCTCATGTCTCCATTTATAAGGTCTT 63553 29 96.6 36 ...............T............. CAAATTGGGGATGCTATAGTTGGAGTTGTAGAAAAA 63618 29 93.1 37 ...............T.......A..... TATATTGTCAATAAATTCTTGGCTATGAAAATTAAGT 63684 27 86.2 0 ....................-.-.A...A | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 92.5 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : GTATTTGAAGTACCTTTTTCAGATATAAAAAAAGTTTCTGTTGAAAAAGAAGAAGAAGTTATCAGAAGATATACAGCAACTAGAATAGCTTTATTTGGACCATTTGCTTTGGCTATGAAGAAAAAACAAAAAAGTTCAAAAGAATATCTGATAATAGAATGTAAAGAATTTATTTTAAGCTTTGGAAGTCCTATTTCATCTCTTCCAAACCCTATGAACAGCCAAGTATGTGAAATGGTTTATAAAGGGTTAACTAAATATAGAGAAAACAATGGTAACAATAAAAAAATTACCATAGAAGATGGAAATATACAACAAGTAAAAGGATTAAAAGAGTTATTAGATATGGGAGCAATAACAGAAGAAGAATTTAATAAGAAGAAAAAAGAATTATTGAATTTATAACAATAGAAAGTAAACAAGTATAAACATACAAGGCACTTTAATATTATGTTGTTTCAAGTGCCTTGTTTATTAAAAAGTGGTATAATAGAGGTAAG # Right flank : ACTAAATAGAAAAAAGAAGCACTTACTTTTATGGTAGGTGCTTTTGTTTTGTCTTATATTGGAAATTTGTCTAAAGATAAATTATAATGATTATATAGATATTTATTAGGGGGATTACACTATGGGATTATTCAAAAAAAAGGAAAAAGAAAAAGGAATTTGTATGATTTGTGGTAATGAAGGAAATGCTTTAAAAACTGTAGATAATGAGTTTTTGTGTGATGAATGTTTTGAAAAATGTAGAGGCGAAATAGCTGTTCTTGGAAAAGGATTAAAAAAACTGACAAGTAAGGAAGTTATGAATGCTGTAGAGCTATGTAGAGATAGTTTTGGAAATTTTGTTAAAAACACATTAATACAAATTGTATATTTAGGAGGTCATCCTTTATTTAATAGAGAAGAGATGATTTGTCTCTTAATTAGAAGTGACAAGATAGTTGTTAAAGCTTTTGGAACAGGACCTATTCCTATAGTGGATGTATTTGAAGTTTCCTATTCAG # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 66447-67129 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXLR010000017.1 Clostridioides difficile strain HC208 NODE_17_length_78962_cov_22.5884, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 66447 29 100.0 37 ............................. CGGAGTGAATCTCTTGATTATTTTATTCCTTCTACTT 66513 29 100.0 36 ............................. AGCTACTTCTTTAAACAAATCCAGTTCTTTTGTTTT 66578 29 100.0 36 ............................. ATGAAGAATTTGCAAAACTGATAAGAAGAGATATTG 66643 29 100.0 37 ............................. ATTAAGAGAATCCAAAAAGAAAAACCTAACAACATAG 66709 29 100.0 37 ............................. GAAGAATATATGCATTATTTTAATGAAGCAGCAACAA 66775 29 96.6 36 ...............A............. ATTATCCTTATTTGCTAATACTATGAGTTTTTCTTC 66840 29 100.0 37 ............................. GAAGGATATAAAGTAGCTGTTATTCCTATACTTGAGG 66906 29 100.0 37 ............................. TTACCAAAGTTTATTTCATTGAATATCTCATTTGAGT 66972 29 86.2 38 G.......C....A..............T AGTGTTAGTTTACCAACTTTAATTGCGATTGCTAACGT 67039 29 93.1 34 G..............A............. TGAAAAAAAGAATTATAAACTATAATAAGCTTAA 67102 28 86.2 0 ............T.......-..T....A | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 96.6 37 ATTTTATATTAACTATGTGGTATGTAAAG # Left flank : ACAAGGTGAGAAGAAGAATTATCATGTAGTATACAAGATTGAGTAAATTTATAAGATTGTATTAAATAATTTAGTTTAGTTTAGTTTTGAGGGGGATTAATGCAATGTATGAGAATTTACTTGATATGGATAGGATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAAATGAGAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAATGTAGAAAAAAAGAAAAGAAAGAGAATAAATAATATAGATAAAGCACTTGGATATTATGTTGTTTCAAGTGCTTTGTCTGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTAAGCGATTTTTCTACTCAAGTATAGCTCAACAATTGGAATACAAGGCATTGAGAAGGTTTGATAAGTGTTATCAATTGCACTACTAGCCGCTCACTGCAAATTTAAGAGAGTTTTATGTGTGTAAGTATTGAAAATACTTAGTTTATTTTGGG # Right flank : ATTAAAAATACTAAAAAACACTTACAAATGAGTAGGTGTTTTTTTATTGAAAGGATATGGTAATAGTGTGAAAATAGAATAATTTTGTTAGGCATAATGTGTAACTATTTTACTGATATAGTATAATGGTGTTATAAAGTATTATACTAGGGGTGATTAATGTAATATGGGTATATTTAATAATAGTGTAGAAATAAATCAAGAAGAACCATTTAAACATGATAAATTATGCAGACGAAGTGAAATAGAAAATTTAACTAAACTATTTGAAATTACAGATAGTCAAATGGTGTTAGCTGTTAATTCTCCTTGGGGAGCAGGTAAAACTACTTTTTTTGAACTGTGGAGAGCATATTTAAAAAGTAATAATGAATTGAAATCTAAGTATGAAGTGATATATTTTAATGCTTGGGAAAATGATGATTGTTTGGACCCACTCGTTTCTATAATGGGTGAAATGAAAGAGAGTATAGAAAAAGTAAATAAAACAAATTGGGATA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //