Array 1 399-102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDO01000015.1 Neisseria arctica strain KH1503 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 398 32 100.0 34 ................................ CGATTAACACTTCAGTAATGCAAGGTGATCTGTA 332 32 100.0 34 ................................ CTCGGACCTCCGCGTGAAGATACAAGAGTAATGC 266 32 100.0 34 ................................ GGTTACGCCCGGCTGATTCAGACAGCTGCTGATG 200 32 100.0 35 ................................ ATCACAGTATTTGGCTACTTGATATAACGCCCATT 133 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 34 TCAGCTACCTTCAGGTAGCTGTGTGTTGAAAC # Left flank : CCAAATCGAATACGACGAAGCATTGCGCCAAGCCGATTCCGCCAACGACTTGCGCCTGCGTATCCAATTACACGAAGAGGGCGGCCAGCCCGAGCGGCTGTTTGACCGTATCAGCGACTTGAACCTGATGTAAGCAAGGTTGCGCCGCAATATGTGCGGTATCCGTTATGATTAAATGCCGTCTGAAAAATTTTTCAGACGGCATTTGAAATAAACGGCTCAAACAAACGAAAAAACGCAAACTCTGCACCGGTTTTATAGTTAGTCGTTCTACAACCAACCTTTTGAATCCCTACAATACGGTAAACCCATATCGCCAACCCCAAGTACACATCCCAACCACAGCAGATCAGCGATAAATAAAACTTCCGCATAATCAATATACTGCACACGATAGCGTGATAAAATCCGCATAAGGGCAGTCTGCCCGGCCTCCGAACACAGACATTAGCGAATTTACCCGCTCCAAACCTTTGGTTATATGCTTTGCGAAAGAGGCT # Right flank : CTGCATATGGTTTGTAAAAAAGTTTGGGGCTGTATTAGATTGGCAGTTATGTTACCCTTTAAAAATGAAGATAACATACTGTAAACTATCTAAAAAAGTACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCTACCTTCAGGTAGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.40,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 21729-21963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDO01000015.1 Neisseria arctica strain KH1503 contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 21729 33 100.0 34 ................................. TGTGTGTCGTCTTCGTGATTATCGCCCGCCTTAG 21796 33 100.0 35 ................................. TCGGGATAAACTATCGTTATTAGCACAAGTGCTAA 21864 33 97.0 34 ................................C GCTTTCAGGGCAACTACGTCGCCCAAGCCTGCAA 21931 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= =================================== ================== 4 33 98.5 35 TCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GGGGAGACAACGTGTTGTGTTAATGCTGATTACTTATGATGTATCGCTCGCTGACGCGGATGGCGCCGCCCGCTTGCGGCGAATTGCCAAACATTGTTTGGATTATGGTGTGCGGGTGCAATATTCGGTATTTGAATGCGATATTACACCCGACCAATGGGTGAAATTGAAAGCCAAGCTTCTCTCTACTTATAACCCCGATACCGACAGTTTGCGGTTTTATCATTTGGGCAGTAAATGGCGTCGAAAAGTCGAACATCATGGTGCAAAGGCTGCAGTGGATATTTTCCAAGATACTTTGATTATTTAAATCGCTAACTATTAGTTCTCATAAAAAAGCCGTTAGGTTAGCGATTTTAAAGAGTTCTTTAACAATCAAAAGATTATTTTCATTTTGTGTTAGAATTTCTTCGGGCGGATCACCGCCTAGGCCTTTATGGATGATGATTAGCGAAGTAAGATTTGTTGAGCCTTAGTAGTTCAGCTTTTCCAGACAGGCT # Right flank : TTCTTGGGTGTATGCCCCTGTTCTGTACTCATTCTCAGGGCTGTGTACCTTGCTCAGAACTGTAAACATTCAGGCCGTCTGAAAATATTTTCAGACGGCCTTTTTTGTTATTTAAATCAGTATATGGCAATTACTATTGCTTTTAGCTATATCAATTACGGATGTCGATAAATGCACTCGAATGAAGTTGTTGTAGCAGATCAGTTGTTGCACGTTGGGCTTTTTGGTCGGAAAGGTATTGGCGTACGGCATTGCGGCGGCGTTCTTCGGGAGTACCTGCGTCACGCACATCTTCCAGTTTGATAACGTGCCAGCCGAATTGGCTGCGTACCGGTTGGCTTACTTGGCCGCGGCGCAGGCGTTGTACGGCGTGCTCAAACTCGGGAACCATCACGCCGTCGGTAAACCAGCCTAAATCGCCGCCGTTAGGCGCACTGCCGTCTTGCGAGTGGGCGCGTGCCAGTGCGGAAAAGTCGCTGCCGCTGCGGGCTTGTGCGGCA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 95-863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDO01000017.1 Neisseria arctica strain KH1503 contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 95 32 100.0 35 ................................ AAATATGGTGCAGCCGTTGTCGTAACTACCGCCCT 162 32 100.0 36 ................................ ATAACCGCTAAATAATCGCAATCGGGAAAAGTCGGC 230 32 100.0 35 ................................ TTGCGAGTGAACAGTTACCACGAGATACAGGCGGC 297 32 100.0 34 ................................ AAATAATAATTGCCTGTTGATTCGCAACAGGCAT 363 32 100.0 34 ................................ GGTTAAGCTTGAGCGGGGTGGTGTGGCAACGGAC 429 32 100.0 35 ................................ CTAAAGGGGCAGATGGAGCAGCCGGTGCTGCTGGA 496 32 100.0 34 ................................ AACATAGCCAAAATCTGCTCAGCGGTCTTTTCAG 562 32 100.0 34 ................................ GGCAAACAGACGGAAGACGTAGGCAACAGGTGCT 628 32 100.0 36 ................................ CAAAGCCGGTTAAAGATATGGGAGAGTAACATGGAA 696 32 100.0 36 ................................ TTTTTTGCCGTTAATCAGGCTGCCGAAAAACTCGTA 764 32 100.0 36 ................................ CAATTTTCAATGTAGGGGTGTTACCCGGGTCGCCTT 832 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.7 35 TCAGCTACCTTCAGGTAGCTGTGTGTTGAAAC # Left flank : ACTTTGGTACACCAAAAGAGCAACTTAAAATCTTGCGAATTTGGTGTGATATTTAAGGCTAATCTAATACAGCCCCAAAAGTTTTGTTGCAACGT # Right flank : TTTTGGCCGTCTGAAAATATTTTTCAGACGGCCTTATTTTACTGCGTAAAATTAATGTGGGTTGCTGCTATCCTTATCCGCAATAGTGCTTTGCTGCTCTTTTTCCGCATAACTTTCCCGGTTTAGAGAGTCGGCATATTCCTGCGCAGCGGCATCATCAAACGGGCGCATCACGCCGGTATCGTTACGCGGGTCCAAATCCGCCACTACCGGTCCGGCGGCGGCAGGCATGTTCACATACATACTGCGTTGGTCTTCCGGCACTGCTTTTTGACGCCATGCGAATACTGCCAACAGCCCCGCACAAATCACAAAATAACCGTAAAAGCCATAGCGTTCGGCTTGGTCCATCACCACACCCAACACCAGCGGGGCGGTAAGCGAACCCATACCGTAGCTAAACAGCAGGCTGCGGCTGACTTCAACCGTATTCATGCCCTTAGGCAATTGGTCGTTGGCACGGGCAACCGACAGCGCGTAGAGGGTAAACAGCCCGATGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCTACCTTCAGGTAGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.50,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 17150-18240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDO01000017.1 Neisseria arctica strain KH1503 contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17150 36 86.1 30 CA.CC.A............................. CCATCAAGTTTTAAATCATCTACATTGGCA 17216 36 100.0 30 .................................... TGTGAATGCTCTAATACCTCTAGTGAAGCC 17282 36 100.0 30 .................................... AGCGTAGTATTTAAACCGACATCAAAAGGT 17348 36 100.0 30 .................................... CATGCAACGGCCATTACCAGAACAAGAGAC 17414 36 100.0 30 .................................... CCGCGTCGCCGTGACGTTTTTTGCCGTCCT 17480 36 100.0 29 .................................... TTGAATTTCCTAACTGGCCTTTCGAGACG 17545 36 100.0 30 .................................... TTACTGGGAGTGGTTGGTTAACTGGGTTGG 17611 36 100.0 30 .................................... TCAAGTATCTTACGAACGCCCAAGTTCGTT 17677 36 100.0 30 .................................... AGGTATTTAATGACATGCTCAACCGAGCGT 17743 36 100.0 30 .................................... GCCGTTATCGTGATCTAGCAATGCTTGATC 17809 36 100.0 30 .................................... TTACGCTCGATTACATATGAATAATTTCCA 17875 36 100.0 30 .................................... GCGACCGTGAAGCGGATCTGGCACAGGATA 17941 36 100.0 30 .................................... TATAATTTCTGTTTAAATGATGACAATTTC 18007 36 100.0 30 .................................... CCAAGACCTTTTGCCAATGCATCCATAACC 18073 36 100.0 30 .................................... TATTATTGATGGCGGGAATGATCACTACAT 18139 36 100.0 30 .................................... AACTATGACGTATTGCCTATTAATCGCAAC 18205 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.2 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CAAGTGAACGATTTAGTCGAAGCCAACAAACAAAACATCCAAGCCACCACTGAAAATACAGCCGCCCAATACATACCCGTAGCCGAACAATGCAGCTTCGACGACTTTATGAAAGTCGATATGCGCGTCGCCAAAGTCTTGAACTGCGAGGCGGTAGAAGGCAGCACCAAACTGTTGAAATTCGACCTTGATTTCGGCTTTGAAAAACGGGTGATTTTCTCCGGTATTGCCGCCAGCTATCCCAACCCCGCCGAACTCAATGGCCGCATGGTCATCGCCGTTGCCAACTTCGCCCCGCGTAAAATGGCCAAATTCGGCATCAGCGAAGGCATGATTTTGTCCGCGGCCACCGCCGACGGCAAACTGAAACTGCTGGATGTGGACCAAGGCGCACAACCAGGCGACAAAGTGGGCTAACCGAACCACTTCACGGGTTTTGACTATCCCTATAATCAGAAAGCCTGAATCATTCACAGATTCAGGCTTTTAAAATTAAAAAA # Right flank : TAGTCCAACAGGAAACCTTTATTTCATAATGGCTTCCTGTTTTTTTACCTTAAAAAAAATCCAATCAAAATAATAATAATTGATCGGCATTCACCTTTTTTTCCTGTGTTTTCAGACGGCCCAAAAGTAAATGCATTGAAGCAAACTGTTTCTCAGTTACTTCCAAACATCGGATTGAACCCTCTTCAGGAAGATTGGCGCATAATCGAGTGTAGTGTTTTTGCAACGAATCTCTCCCTCTTACAATGCGGCTGTAAACGGATAATTGCAGCATCTGATAACCGTCTTTTTGTAAAAACAAGCGAAATTGATTCGCTGCTTTACGCTTGGCCGCCGTAGTAACAGGTAAGTCAAAAAATACGATTAACCGCATAAATTTAGCCTCACTCATAAAAATGCTCTTTCAAAGGCAAAATTTCAGGTAACTTTAATAATCTGGCTTGTTTGGTAACAATACTGTTTTGGAAAGAAGCTACTGTTCGGTCAATCGATGCCAATAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //