Array 1 251263-252878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992946.1 Bacteroides oleiciplenus YIT 12058 supercont1.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 251263 32 100.0 33 ................................ AAAAGAGATGTCGTACAACATGAAGGCAAGTAT 251328 32 100.0 34 ................................ TTCCGCTACGTGTCAAAGGTAGAATCAGCAAAAA 251394 32 100.0 34 ................................ ATGGCAAGTATAAGTCTCAACCAACTATCCACAA 251460 32 100.0 34 ................................ CAAGTTGCAAGCACTTTGCAGGCGCCGCCTTTTT 251526 32 100.0 33 ................................ TTTTGCGCAAAGTAATGAGCAAACGCAAATGAC 251591 32 100.0 34 ................................ TCGGAAAGGCTATTGAGGCAGACGAACAACTTGC 251657 32 100.0 35 ................................ TGCCTTACACCAATTACTTGTAGTAGTGGGCGAAG 251724 32 100.0 33 ................................ AAATCGCTCAAGGAGGAATAAAATACATAGGAA 251789 32 100.0 34 ................................ TGCCCGTTAAAAACGGAAGATATGGACAAGATTA 251855 32 100.0 34 ................................ CGAAATTGTAGACAGGATACTATTGCCACTACTA 251921 32 100.0 34 ................................ CTCATTGTAGATGTTGAAGACACTTTTCAACATA 251987 32 100.0 35 ................................ AGAATAAATGTGATTGTAAATATCAAAGCGACAAA 252054 32 100.0 34 ................................ AACGAAAAGAACTGCAATGCCCAGTGCCGGAAGT 252120 32 100.0 32 ................................ CTACCTTTGCTCGAAAAATATATAGTTATGGC 252184 32 100.0 35 ................................ CAGCCCAATGTGGTGAAATTGTTATCCGTGAAGGT 252251 32 100.0 35 ................................ TGACTTTTTGCGGCATATCCGACGGTGGTATTGGG 252318 32 100.0 33 ................................ TTGATAGGCGAAGAAAAGAAACGTATTGCCGCA 252383 32 100.0 35 ................................ TTTTAATCAGGATACCTTGCGCAGTATCAAGTACA 252450 32 100.0 33 ................................ ATTATCACCTTCAGGTACTTATTGAAATATTGG 252515 32 100.0 35 ................................ CATGTCTTCCGTGCAGGAAGTGATGATGTCGGCAA 252582 32 96.9 34 .............T.................. CTGAAAAGTTAATACCCAATAATGAAGATAAGAA 252648 32 100.0 33 ................................ AGGGCTGCTTCGTATGTCTGCCGGAAAGCAATA 252713 32 93.8 32 ...............A.......A........ CAGTAACCGGTGCGCGCTTTCACATAATTTCA 252777 32 84.4 36 ............A...A.C.C..........T TAGGTTTTATATACCACTTACCCTAGTGTATCAATT CT [252781] 252847 31 75.0 0 A..G..-.....A...A....AT......T.. | A [252860] ========== ====== ====== ====== ================================ ==================================== ================== 25 32 98.0 34 GTCACTCCTTATGCGGGAGTGTGGATTGAAAC # Left flank : TGACCTAGATAATTATCCTGTATTTTTAATTTCATAAGAATGTTTATATTAGTAACCTATGATGTAGATACTCAATCAGAAACGGGAGCTAAACGATTGCGTAAAGTGGCTAAGGAGTGTTTGAATTATGGGCATCGTGTCCAAAATTCAGTATTTGAATGTGTATTGTCTGAAGCGCAGTTCCTGATTTTTAAATCGAAAATTATGAAAATAATAGATTATGATTTAGATAGCATTCGCTTTTATTTCTTAGGCAAAAATAGGAGTAATCGAGTTGAGTGTTTAGGACGTGAAACATCTATTGATGTAAATTCTGAACTAATAATTTAGTATATTGCGAATGTGAAGCGTTGCATATTTTGTGTGTCTTTCGCAAGTGCTAATAATCAGCCATTAAGGTTCTTTTTTGCTTAAAAATGTGTCCTTTATAAAAATAGATTTTCTATCTTCGCAAAATGCTCTTTAATCATATAAGAGTATCAATGCTTTAAAGTAAAAGA # Right flank : CATTCACTTTAGTTAAGTTTTTACTTGTTATTTCAATATTTAACGAATAAGTGTGGAGCAATAAGACATTAGCAATTTTCTAAGATTATTGCATATTGCTGTTTTATAGTCTTTCGATGATCATTATACTGCAAATAAGTATTGTGGGCGAATCTTGAATTTTGTCGTTTCTCTGCAAGATATATCTTGCTTGTAGAGATGTGCAAAAAATGTTCCCTTCATTATCAGTTACTTATGCCTCTCTCTTGTAGAGAACATTACTAATTTGCCATCTTTGCTGTTCTTCTCCGTTTTCTCTTCATTTCATTCCTTGTAGAGATGGCTGTAATTTAATGTATTGTTTATTAGTGATTTAAAGAATTGTTTGGTAGATGCCATTTTCTTGCTTTTACCTTTATCTCGCCCTAACTTTGCAACATCGAATCTGAGAAAACAGAACGCCTGACTGTTGAGGCCTCACAGTGAAAAACGTCTTGTTTACGGATGAGATAAGAGAAAGA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTATGCGGGAGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 64936-63393 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992945.1 Bacteroides oleiciplenus YIT 12058 supercont1.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================================================== ================== 64935 47 76.6 30 A.AC....AG.CTA......T...AC..................... CCAGATTGTTATGTATTGTTTTGCATCTAA A [64920] 64857 47 100.0 30 ............................................... GTCAACATCTATAACGTCCCATTTGAATAC 64780 47 100.0 30 ............................................... TTGATGGCGGTAAGGGTTGTTACTGTCTTC 64703 47 100.0 30 ............................................... ATCATACAGTAAGTATGCATTATCATCAAT 64626 47 100.0 30 ............................................... TGCGAGGACGGTGATCCCCGCTCCATACGC 64549 47 100.0 30 ............................................... CCAATCGCCACAAGGTTAGTAGTATCTATC 64472 47 100.0 30 ............................................... TGCTTCTTGCAGGCTGATAATACCGCTGAC 64395 47 100.0 30 ............................................... GGAAGACGATGAGTAGATTACAGCATAAGA 64318 47 100.0 30 ............................................... GATAGAAGATGATGGTCCCCTTAGTCTCAG 64241 47 100.0 30 ............................................... CAGATGCACTTAGTGAATGGCCTGATTCAA 64164 47 100.0 30 ............................................... ACAAAGAGAAGACACCCAGTTTTATGGTGA 64087 47 100.0 30 ............................................... TGTACCGTCGGTTGGTTCTCGCTTCCCGGA 64010 47 100.0 30 ............................................... TTAATGTAGCCGAATAAGTCGCATGAGGAT 63933 47 100.0 30 ............................................... AATCTGTCATCTTCTTAATATCTCCATTCG 63856 47 100.0 30 ............................................... AATAATAACTCAAAACCCGATACTTTTATG 63779 47 100.0 30 ............................................... CATTATTCATTAGGGAATTGGTTGGCATAC 63702 47 97.9 30 ....T.......................................... CCGGGGCACCGCAGAACGAGATGAAGGACC 63625 47 95.7 63 ....T.........T................................ TTTTTCACAGAAGATGAAATTGCAAATCACAACGGAAACGGCGGCGTGCTTCATACGACTGTC 63515 47 93.6 30 ....T.........A....................C........... CACCCCGGACATAACACGGTTGACGTAGTT 63438 45 83.0 0 ....T...C.....T...............C....-....AA.-... | A [63409] ========== ====== ====== ====== =============================================== =============================================================== ================== 20 47 97.3 32 GTTGCTTCTAATGGCTCAAAGATACTAAAATGAAAGCAAATCACAAC # Left flank : CAAGCAAGGAGGCAATGTCCCGCATCAGAAGAGAATCTCCCGAGTACGCTTTTATTTGTTCGGAACTGCGGGCATAATCCCGGTAACGCGATATGACCGCCGACAAAGCATTGAACTTCACGGCGTGAACGCCTTCTATAAAGGAAGGGCGAAGACTGTTGTAAATGGATAAGTCGGTTTGCATAAGTCATTTCTATAAAACGGAGCCGCATCCCCTTGTTGCCAAAGCTCCGCAAGTCGTTACTTATGAACCGCTTGGAACACGGTACGAATCCTAATTACAAATATATCGTATCCGACAATCCGGAACAAATATCAGCAGGCAAAAATGAAAATAAACCTCGTTATTTTTGATTTTTACCTGCAATAATATTATATTTGCAAACAAATAAGAGTTGTTTGACAGCATGAGAAATATAGTGTATCAAAGCACTTTACCAATTTCTTATCCGTTGCCTATTCTCATGCGAGTTTCTTTTAATCTATTTGTAGTCAATTAA # Right flank : TGAATGAGCGACTATAAATGAGAATTGGCAGAACTGTTTTACATAGGTAGATTCTTTGCATGAGGACATAGGGCATATTGGATTCTAAGCTGGTTAAGATAGTTCTATATTATATTTTGTTATCATTACTTGAAATAATTAATTTTAGGGGCGAAAATTCAGATGAAAAATCATATTTCGTCTTTTTCTTCGTCTTTTACCAGGCTTTTTTGAAAAAGTTATCTGATTGTTTTTTGGTATGCAATTCTGGGCGTCCCATTTGAAACATAAACCGTTCCACAGCGGACAAACCCGTTCCGCGTGAGGAGGTTTTGCATGATAATATTGTCCTTATGTGTATCCGCGCGTAAACTGGGATATTGCTTGGCGCACCAACTTAAACAAATATCACCGATACCCTTATAACTTCCATCGGAGGCGATGCGATGAATGACGTAATAGGGCTCGTCATTCAACCAGGCTCCATCTTCGATAATGGCATAAAAAGGATCGGGACTCGG # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTTCTAATGGCTCAAAGATACTAAAATGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 125664-126482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992945.1 Bacteroides oleiciplenus YIT 12058 supercont1.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 125664 47 85.1 30 T...CCG...TT..G................................ GCTATATGCGAATGAACCTACCGATGGTGT G,G,C [125679,125681,125684] 125744 47 100.0 30 ............................................... AAAAGACAACAACGAACCGGGTAAAAGTGG 125821 47 100.0 30 ............................................... AGGTATTTGTAATAGACGATTTGGAGAGCA 125898 47 100.0 29 ............................................... TTTAAGTGGGGTGTTCCACTGTTCCAACA 125974 47 100.0 30 ............................................... TCTCAGGAGCGACCAGCATAGCGTCAGCAG 126051 47 100.0 30 ............................................... TACAGTAAACGGGCGTTCGTAGACGGGTCA 126128 47 100.0 30 ............................................... AGTGGAAAGACCGCATGTATAACGTCTGTA 126205 47 100.0 30 ............................................... GTTTTCTGATGGGATGAAGCCCGGTAAAGT 126282 47 100.0 30 ............................................... TACCGATGAAGTGAAGGCGCAGCTGGAGGC 126359 47 100.0 30 ............................................... TTGCTGACGTATATTCATGGAAGGAAGTTA 126436 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 11 47 98.6 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAGCCATTAGAAGCAAC # Left flank : AGCGGGTACGGACATTTTCGCGCTAAAAGCCGCTTCTGAAAATTTGCCGACAACAAGTTTCGCCATGACCGGGCAATGTCCCTCGTCATTCATTTCGCTCTTTTTGAGGTAGAACGTAACCGTTACATCCGTCTGTTTCATAACTCTATTTTTTTATGTTGCAAAATTACTTGATATAGAGTTATTTACAGTTATGAAAATTATAGCGGAACAAAGAATAAAACCCCGGATGCCGGTAACATAACCTGTATTTCCATGAAAAACGGAAAAAAACGGTTATCTTTACGAGCAAAATATAGGGTTCTTTGCATGGTGAACGGTAAAACCGCAGGTGGTCAAGCGTTATTTTGCCGGATTATCCGGGGCTAAAAAAGGCAACGGATAAGTAGCAAATCTTTCTCTTAACCTTTCATTATCCTGCATTTTAGCGATTTGGAAAGGTATAGAAGAATTTGGCTTAACTCTCCTCAATACCAAACACTTACTTTATTTATCCAAAT # Right flank : CTGATTATCAGTTATTAGTTCATATTCAAATAGTTACACCACTATTTAGAATTTAAAAAAGAACTTAGTTTCCAAGAGAAAATCTCGCCAAATAGCGGGATTTTCTTTTCAGAATAACTCCAACTGTTGTCCTGGCGTATTCACATCCATTGTTTTTTTTCCATAGAAAAGTTCAATATTTCCAAATTGTTTGTCTGTAATACACATGATTCCTACATTTCCATGTTCAGGTAGAAACGATTTAACTCTTTTTATATGTACCTCTGCATTCTCACTGCTCGCACAATGACGAACATATATAGAAAATTGAAACATCGTAAATCCATCTTTTTGCAGATTCTTTTTAAAATCTACATATGCCTTCTTATCCTTCTTCGTTTCAGTAGGCAAATCAAATAGTACAAGTACCCACATAATGCGATATTCACTAAATCGGTCCATTTACATCTCTGGATAGAATATTCTACGTAACTCACCACTAAAACACTTATATAGAGAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAGCCATTAGAAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //