Array 1 545795-548444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGTIT010000001.1 Klebsiella pneumoniae subsp. pneumoniae strain EC0312-F-N720-1-636 NODE_1_length_642643_cov_32.691134.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 545795 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 545856 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 545917 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 545978 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 546040 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 546101 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 546162 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 546223 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 546284 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 546345 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 546406 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 546467 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 546528 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 546589 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 546650 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 546711 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 546772 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 546833 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 546894 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 546955 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 547016 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 547077 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 547138 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 547199 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 547260 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 547321 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 547382 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 547443 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 547504 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 547565 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 547626 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 547687 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 547748 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 547809 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 547870 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 547931 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 547992 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 548053 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 548114 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 548175 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 548236 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 548297 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 548358 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 548416 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5906-6911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGTIT010000021.1 Klebsiella pneumoniae subsp. pneumoniae strain EC0312-F-N720-1-636 NODE_21_length_95126_cov_32.966765.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5906 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 5967 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6028 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 6089 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6150 29 96.6 32 .....T....................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 6211 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6272 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 6333 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6394 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 6455 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [6460] 6517 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [6522] 6579 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [6584] 6641 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6702 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6762 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6823 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 6884 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //