Array 1 10746-14742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUA010000011.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 1368 CIRM_BIA1368-i1-1_scf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 10746 28 100.0 33 ............................ CTGGATAAAACCCTGCCCAATTTCACCGCCAAT 10807 28 100.0 33 ............................ TTTTTTCACGCTGCTACAAAAATTTCCCGAAAA 10868 28 100.0 33 ............................ TAACCTGCCCAGTGATTTAGCATTTGCTTGATC 10929 28 100.0 33 ............................ TCGAAAAAATTTTTTAAAAAGGCTTGTACAAAA 10990 28 100.0 33 ............................ TATCTGATTCTTCGTTGTCATCCTTGTAACCAT 11051 28 100.0 33 ............................ TAGCTGCCAGACCTTTGCCGATTGCCCGGAGAG 11112 28 100.0 33 ............................ TATCCGCCATGATGTCCCCTACTACGTAGGCTA 11173 28 100.0 33 ............................ CACACTCCCCAAAAGTTGCAAGCTTTTGTCTAA 11234 28 100.0 33 ............................ TTCTACTGTCTGCTTGACAGGGAATGTATCACA 11295 28 100.0 33 ............................ TTTGTTGATGCTCACACCATCGAAGTGGATCAA 11356 28 100.0 33 ............................ CCATTCCGGCGCCGGCCAATCATCCTCACACTC 11417 28 100.0 33 ............................ CAAAAACGAAATCGAAAAAAATTTTTTAAAAAA 11478 28 100.0 33 ............................ TTCACGATCAAAAATTTTTTTCTGTTTTCCAAA 11539 28 100.0 33 ............................ TTAGCTTACTTGTATGGTTTAAAGGGCTGTATG 11600 28 100.0 33 ............................ TATTGAAGAACTTTGCTGGCCCGTAAATATTGA 11661 28 100.0 33 ............................ CAGCTGACAGCGCCGAATCCCTGGTGAACGACC 11722 28 100.0 33 ............................ TTAAAATGGAAAATGAAAAAACTTTTTTGGCGA 11783 28 100.0 33 ............................ TTCTACACTAACTTTACTAAGTTTGACGCTGGT 11844 28 100.0 33 ............................ CCATCACCGGCGCCATATCATCACCGACCACGA 11905 28 100.0 33 ............................ CTCTAGCTTCTTTTTAAATGTGTCCAATGACTT 11966 28 100.0 33 ............................ TTGCTTTAAGACCATGTGCATCGGTCGTTGAGT 12027 28 100.0 33 ............................ TGCCAAGCATGACCTGATCGGGATCACCAGAGC 12088 28 100.0 33 ............................ TTTCTTAAAATTGTGTTAAGATTTTTTATGTTT 12149 28 100.0 33 ............................ CATATAAAGGAAAAAATCGAAAAAATTAATCTA 12210 28 100.0 33 ............................ CTGTTAAAGCCGCTGAGGAGGTTTTCCATGTTG 12271 28 100.0 33 ............................ CGCTTGTGTGTCAAGGCTTTAAAGGGTTTTACA 12332 28 100.0 33 ............................ TATAAAGTTAAGGAAACGAGGTATTAAAAATGA 12393 28 100.0 33 ............................ CTCATCGCCAGAACATTTAAGTAGGTCGCTGTA 12454 28 100.0 33 ............................ TCTACCCTAACTCTGAAAAAAATAAATGGCTTG 12515 28 100.0 33 ............................ TAATTGCAAACCTAGCACCCGCCTTATGATATG 12576 28 100.0 33 ............................ TCTGCAAATTCAAGTATCAAGGCGGCCATGACA 12637 28 100.0 33 ............................ TCCAATCATTTACGCTCATTTTTATCCTCCTTA 12698 28 100.0 33 ............................ TCCTGATGCTGAAGACACGACGCAGGCACGGAG 12759 28 100.0 33 ............................ TTATTGACAGCTTGCAACAAGGTGTAATTATCA 12820 28 100.0 33 ............................ GAAGCCCTACAAGAGCCGCCCCATCTAAGACAT 12881 28 100.0 33 ............................ TCTAAGATATCACTCATACTTACGCCTAAGCCA 12942 28 100.0 33 ............................ CGTCTACGAAGACTTCACAAACGAGCGTTTGCT 13003 28 100.0 33 ............................ CAAAAATGGAATCTAAAGAAATTTTTTTGGCGA 13064 28 100.0 33 ............................ TTCCTCTTCGTTACCGTTGAACCACTTATCAAC 13125 28 100.0 33 ............................ TCTAGCCACAAGATCCGCTTCTTAGAGATATTA 13186 28 100.0 33 ............................ TGGCGGGCAATCAGAATTGGAAGATCAGTATGC 13247 28 100.0 33 ............................ TCCTCTAAAACCTTGATACACAAGCGTTTAGAG 13308 28 100.0 33 ............................ TTTTTTTAAAAAAGCCTAAAAACGGCGTCGGAT 13369 28 100.0 33 ............................ TTAGTTTCAAATGCAAGCCCCTTTTTTAAAAAA 13430 28 100.0 33 ............................ TACGACATTGAGAATGAATTTAAGGACATGGTT 13491 28 100.0 33 ............................ CCGTTCTCGGCAATGAAACACGGGTTATCCATA 13552 28 100.0 33 ............................ CATACGACAAAAGCTTTTGATGTATCTCGTGTT 13613 28 100.0 33 ............................ TCGTTTACCGTTAGCCGTGAACTCAAAATCAAG 13674 28 100.0 33 ............................ TTATGAAATTAATGGAGTGAATTATGACTAAAA 13735 28 100.0 33 ............................ TTATATCATATTAGTTAGTTCAGTTTTAGCATA 13796 28 100.0 33 ............................ TGACTTTTTCACTTCGTCGATATTCTTATGGGC 13857 28 100.0 33 ............................ CCGTATTCACTTAAAGCGCTGGCTTCAAAAAAT 13918 28 100.0 33 ............................ TGTCTTCAATGTCGGTAGTATCCATAAAAGCTT 13979 28 100.0 33 ............................ TTTTCGATTGCCCGGCCGACTACCGGCCGGAGT 14040 28 100.0 34 ............................ CAAGTTTTTGTACCATTCAATGACCCGCCTTTAA 14102 28 100.0 33 ............................ TGTCACCGATGCTCACGCCTACACCGGCCGGGT 14163 28 100.0 34 ............................ CATTCTCATTTACTACATTGAGGAGCAAATGCAA 14225 28 100.0 33 ............................ CAGCAACTGCAGTAAACAGCAAACAGCAAACAG 14286 28 100.0 34 ............................ TGATGACGGCTACTACGAGTATTTCAAAACGCTA 14348 28 100.0 33 ............................ TAATGGATTTACAGAAAATTTTGGAAGAGATCA 14409 28 100.0 33 ............................ TAACATCATCATTTTTTACAATATTTGAAAAAA 14470 28 100.0 33 ............................ TTGGATTTCTTTCCTTAGTAGAAAAAACATCTT 14531 28 100.0 33 ............................ TCAGCACATACCTCTTAGCGCCCAGGGTTTTAA 14592 28 100.0 34 ............................ TAATTTTTAAAACAGGACACTTTTATCTTGCCAA 14654 28 100.0 33 ............................ ATGAAGGTAAAGGTCTGCTTTTCTAGGAACACT 14715 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 66 28 100.0 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGATTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGAAGGCGTTCCACTGCAAGATGTTTTGGGAGAACTAACTGACTTTGTTGGGGATGTGCCAATCGTTGGGTATAATTTTAGATTCGATTCTGCATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTAAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAATAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : CGTTCGCCTGCCTTAAATTGGCACTAGAAAATTAGTATTCCCCACGCAAGTGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCTCTTCCGCGCTACCACCCGCTACGGCAACCAGGGTATTCCCCACGCAAGTGGGGGTGATCCCATCAGTTGACCAGCGTCTAACATAGACAAACTGGTATTCCCCACGCAAGTGGGGGTGATCCTCTTCCGCGCTACCACCCGCTACGGCAACCAGGGTATTCCCCACGCAAGTGGGGGTGATCCCATCAGTTGACCAGCGTCTAACATAGACAAACTGGTATTCCCCACGCAAGTGGGGGTGATCCGTTCGCCTGCCTTAAATTGGCACTAGAAAATTAGTATTCCCCACGCAAGTGGGGGTGATCCCGCCGTTTGCGGCAATAAAGCAAGGGTTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14937-15576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUA010000011.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 1368 CIRM_BIA1368-i1-1_scf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 14937 28 100.0 34 ............................ CATCAGTTGACCAGCGTCTAACATAGACAAACTG 14999 28 100.0 33 ............................ TCTTCCGCGCTACCACCCGCTACGGCAACCAGG 15060 28 100.0 34 ............................ CATCAGTTGACCAGCGTCTAACATAGACAAACTG 15122 28 100.0 33 ............................ GTTCGCCTGCCTTAAATTGGCACTAGAAAATTA 15183 28 100.0 33 ............................ CGCCGTTTGCGGCAATAAAGCAAGGGTTTTCCA 15244 28 100.0 33 ............................ TGACCGTTATATTAAGGGTTTTTGCCGTCAATA 15305 28 100.0 33 ............................ CATCCATTATCACCCGTTTTTTGTAACCGCCTA 15366 28 100.0 33 ............................ TGGGACTAGACAATGTGCTGAACATGGAGCAGG 15427 28 100.0 33 ............................ CTTATACTAATGCTTCTGCTTCATCTTTCCATT 15488 28 100.0 33 ............................ TAGCTCGTCTTGAACAGCATTTAGTAAATCGCG 15549 28 85.7 0 ............T.T.......CA.... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 98.7 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : TAACATCATCATTTTTTACAATATTTGAAAAAAGTATTCCCCACGCAAGTGGGGGTGATCCTTGGATTTCTTTCCTTAGTAGAAAAAACATCTTGTATTCCCCACGCAAGTGGGGGTGATCCTCAGCACATACCTCTTAGCGCCCAGGGTTTTAAGTATTCCCCACGCAAGTGGGGGTGATCCTAATTTTTAAAACAGGACACTTTTATCTTGCCAAGTATTCCCCACGCAAGTGGGGGTGATCCATGAAGGTAAAGGTCTGCTTTTCTAGGAACACTGTATTCCCCACGCAAGTGGGGGTGATCCGTTCGCCTGCCTTAAATTGGCACTAGAAAATTAGTATTCCCCACGCAAGTGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCTCTTCCGCGCTACCACCCGCTACGGCAACCAGG # Right flank : CGTTCTTTATGTTATTGTGCTTTTCGTACTGTGTATTTTCCATACATATGCCGCGATGATCATAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGGGAAGGAGTGAGGAACAAGCGTGAGCATTTACGGAAAGTATGCCGACTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAAAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAGGAGAAGAAAGCATGACGCAAAAGTGCGAGAGAAAAGGTATGCCGCTGACGCCAGAGTCTGCATTGATCGAAAATCGAGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGCTCATA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //