Array 1 9016-10264 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWV01000046.1 Escherichia coli strain A255 NODE_19_length_102890_cov_80.3964, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9016 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 9077 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 9138 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 9199 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 9260 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 9321 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 9382 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 9443 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 9504 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 9565 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 9626 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 9687 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 9748 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 9809 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 9870 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 9931 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 9992 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 10053 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 10114 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 10175 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 10236 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19267-17651 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWV01000021.1 Escherichia coli strain A255 NODE_1_length_560405_cov_83.2195, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19266 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 19205 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 19144 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 19083 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 19022 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 18961 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 18900 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 18839 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 18778 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 18717 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 18656 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 18595 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 18534 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 18473 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 18412 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 18351 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 18289 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 18228 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 18167 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 18106 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 18045 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 17984 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 17923 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 17862 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 17801 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 17740 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 17679 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //