Array 1 222651-221481 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009747.1 Pseudomonas parafulva strain CRS01-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 222650 28 100.0 33 ............................ AGCTGCAGGCCGGCAGCGAGCGCCAGCTCTCAC 222589 28 100.0 32 ............................ GATGGGGCGTTTCGCGTACCCGACCACCACCT 222529 28 100.0 32 ............................ GCGTTGGACTCCAGCAGGTGATCGAACAGGCT 222469 28 100.0 32 ............................ AATATCGGACTGCACCTGGTGCACCGGCGCGT 222409 28 96.4 32 ....................T....... TGGAGCACGATGCCGACATTGCAAAAGTGCAG 222349 28 100.0 32 ............................ AAGCCCACACCGAGGCTGAAATAACCGAGCTG 222289 28 100.0 32 ............................ ATGTTCATGACACCGGATGAGGTAGCCGACAT 222229 28 100.0 32 ............................ AGGACGATCGGCCCGGGTAGCAACGCTGAACT 222169 28 100.0 32 ............................ GTCACTTCGCCCCGGTAGATTGAGAACACGAG 222109 28 100.0 32 ............................ TACGTCGGTCAGACCACCCAGCCCTTCACGCT 222049 28 100.0 32 ............................ CGAGGAAGTCGACAGGGTCCGCGAGTGGGAAC 221989 28 100.0 32 ............................ TATCCGCCAGAGCAGAGCCGAGCGCGCCGGTT 221929 28 100.0 32 ............................ TTGTAGCGCAGGCGTACTGCCGATTCCGCGTT 221869 28 100.0 33 ............................ ATCAATGCGGCACCGCCGGCCGTCGTAGTAGAC 221808 28 96.4 32 ............T............... CAGAAGAGTGGTGTCTCTCCGGGCCAGGGCCT 221748 28 92.9 32 ..........T..........C...... TTATCCAGCCTCAAGTCCACCGCCGTTCTAAA 221688 27 82.1 32 ....C.....A..-..C...T....... CGACGGTAGCAGCCGATAGGCTTGAGGCACCT 221629 28 75.0 32 .........T.ACCC.A..A........ GCCGTCAAACGCGGGGCCAAAGACGTACAAGC 221569 28 85.7 31 C..........CA..C............ GACTCATAATCAGCAAGCCGTAGCTTCAACT 221510 28 75.0 0 CA.........AA.........A.C..T | G,A [221487,221504] ========== ====== ====== ====== ============================ ================================= ================== 20 28 95.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GGCGCTCGGCAGCCTGCAGCGCACCGACTGGCTGAGTGGCATGCGCGATCATGTTCGGTGTACCGGTCCCGATGCAGTTCCCAGCGCCGTGCAGTACCGCTGTGTCAGCCGCGTGCAGGTCGACAGTAATCCGGAGCGACTGCGTCGCCGGCTGATCAAGCGGCACGGCATCAGCGAAGAAGAGGCCCGCCAGCGGATTCCGGAGAGCCGTGGCAAGACGTGCAACCTTCCGTATGCGCAGCTACGTAGCAAGACGTCGGGGGAGATGTTCCGCTTGTTTGTTCAGCATGGGCCTTTGCTGGATTGCGCGCGGGAGGGGACGTTTGGCGGGTACGGGTTGAGTAGCCAGGCGACGGTGCCTTGGTTCTGACCCTTTTTTTCGCGTGGGCGATAGAGGGTTTGAAAATCAAGGGGTTACGGAGGATCGATAAAATTGGGGTGATTGGTTTCAGAGGGTGATTTGTTTAGTTGATTCAGGGTGTTAGATGCAAATTGCTCTA # Right flank : TGATCCATCAGCCACATGAGTCGCCCGCCCGTACCCGGTAACCCACCGTGAAACAGGCTGGGCGCATCCTTGCCTCACAGCTCCGACACCGTCGCCCCCTGCCCAAACACCCCTGCCACCGCCTCAACCACCACCTTCACCCGCGCCGTGTGCGCCAGATCCTGATGCAACACCAGCCACGCTTCATAAGGCGTGGCACGCCGGCGCTGCGGCCATAGCCGCGTCAACTGAGGATCGCGCGCCGCCAGATAGTCAGGTAGTTCACCCAAGGCCAACCCTGCCCGCACGAATGTGGCCAACATCAAGCTGGAGTCCAGCTCGGCCACCACCCGCCCCTGCTTGATGGGCACGCCCACCAGCGTCCCGTCCTGGCGCTCGGTCACCCCGGCCTGGTACAGGGCAATGTCGTGTCCGGCGAACTGGCCCTGTGGCTCTGGCGTGCCATGGCGTTCGAGATAGCCGCGAGTGGCATATAGCCCCACGTCCCAACTGGCCATCCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 231406-233478 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009747.1 Pseudomonas parafulva strain CRS01-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 231406 28 100.0 32 ............................ AGAGTGAATGCCTGTTTGCGCGGTGCGCCGCC 231466 28 100.0 32 ............................ AGCGCGCGAAGACGCGTTCGATTCCCGCGCCC 231526 28 100.0 32 ............................ GTGGCGATTCGGGTCTTGTGCATCCACCACGC 231586 28 100.0 32 ............................ AAATCGCGCTCAATTCGTGCGTGAACCCACTC 231646 28 100.0 32 ............................ AGCTTCGCACGCTGGCCCTGCAGGGCGGCATT 231706 28 100.0 32 ............................ AAGTAATCAACCGCCCTGGAGGGCAGATAGAT 231766 28 100.0 32 ............................ TGAAGGTCGTCGATGGTGAGGCGCTGGGGCTG 231826 28 96.4 32 ..........A................. TCCGGCTCTGCGCTGGTGGATAGAGCTTTGAC 231886 28 100.0 32 ............................ TACACCCGCAGGCGCTCCAGGGCGCTGGATTG 231946 28 100.0 32 ............................ AAACTCGCCCAGGAAGCGGCCCACGTAGTCAT 232006 28 100.0 32 ............................ GACATCGGCACTGATCGTCGCCCGAATTGAGG 232066 28 100.0 32 ............................ TTCTCGGTGCCCGGGTTCAGCAGCGCCGCCGA 232126 28 96.4 32 ........T................... ATCCCGGCCCAAGATCGTCACAACGATGAGCT 232186 28 100.0 32 ............................ AGGGCGAGCCGGTGGCGCTCCCAATGCGTCGA 232246 28 100.0 33 ............................ TGACTCGGCGAACCGAATTTCGCTGGCCTTCAC 232307 28 100.0 32 ............................ GTCAAGATGGTCCCAGTTGTGCCCGCCAGCGT 232367 28 100.0 32 ............................ ACGCCGAAGCTGATGAACTGCAGCATCGAGTC 232427 28 100.0 33 ............................ CTTGAAGCGGTTGCCAAAGGCGATTTTTGCGAA 232488 28 100.0 32 ............................ GCAAAGACAGTCGGGGATGCGGTCAAGTCGGT 232548 28 100.0 32 ............................ ATTATAGAGGCTGACGAACATCGCCCGCACAG 232608 28 100.0 32 ............................ TGAGGACAGTGCCGCGACAAAGGCAACGGAAT 232668 28 100.0 32 ............................ AACCTGTTCGGCTCTGAGTCGATCGGCGCGAT 232728 28 100.0 33 ............................ ATGTACCAAGGTGAGTCGCTGTTATCGACCGAG 232789 28 100.0 32 ............................ TTCAACATGCCGGCGATCACCCGGAGGCGGAC 232849 28 100.0 32 ............................ CATCGCCAGGAACAGGTCGCCGAACCGTTGTT 232909 28 100.0 32 ............................ AATGGCGACGGCCAAGGGTTCTGGCGGGGCGC 232969 28 100.0 32 ............................ AGAACCTACACCGGAGCGTGGGACGGCACGTT 233029 28 96.4 32 C........................... GCAAGGGCCACGTCCGAAACATCAAGGACGCC 233089 28 100.0 32 ............................ ATGTACGTGCGAGCCCGAACGGTGAAGGAAGC 233149 28 96.4 32 ..................T......... CAGGTGCTTGGCGTTGACCGGCAGCAGCTCGA 233209 28 100.0 33 ............................ GACATGCGCGGGCATGGAGAGTTATCGCCATGA 233270 28 96.4 33 ....................T....... TTTGGCACCTGGACGGTATTGCCGAGATTTGCC 233331 28 96.4 32 ..........A................. GAGGGCCGTCCTTCATCATCAAGCTTGGCAAG 233391 28 100.0 32 ............................ TCCGGGGCTGTTGCGCTCCCGTCTGCGGGCGT 233451 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCGCAAAATCCAACCAGCACCCCAGCCTGAGCCAGTTCGCGCATGGCGGCTTGGGTGACTGACGTGCCGGTTCCGAGCAGCACCGTGGTGGTGTTGGCGATGGGGATGTTCCAGTAGAGCGATTGCTTGCCAGCGTCGGTGACATATTCGACCCGACCACCTTTGACCAGCACGCGGCAGTGCTGGAGGTAGTAGATGTTCGCGCGCTTGGAGTGAAGGATGGTCTTCAGGTCTGACGAGGGTATGCCTTCCATGGTGGCCATTTGCTCGTGGGGTGAGGATCGGGATTTATACCTTATGGGAGGGATGGGATTCGAATGGTTTTTGGGGGAGGGGGGAGAGACGGGCGGTTCGTGAGGGGGATGGTTAGACCCTTTTTCTTCGGGTGTTGATTAGTTGCTTATAAATCAATGGGTTACGGCGGTCGGTTTAAAAAGGGTTTTTGAGAAGGTTTCAGATATTTTTCTTTGGTGGTAATGAGTTGGGGTATGTGGGGTCTT # Right flank : ATCGATCCCAGGCCGCCTCGCACAGTTCGAATCAGTGATAGCAACTATCAAGCGGGACGATTTTTCACCTTGTGCGGCGCCTCATAAGCTTGACCCATCGATTCGAAACCCTCGAATGTCAGGCACAGGATGCTGCACCATGAACGCCATTGTCCGTCCTCTTCTGGTTGTCATCACTGCTGTTGGCCTCAGTCTTCTTGCAGGCTGTGCCACCCATCCCGAACTACGTCCCTATACTGCGCAGGAAGTGCGCCAGTTGCGGCTGGAAGCGCTGCAGCGTCACGGGCTATCTCTGGATGCCTACGAAAGGCAGCGGGCTGTAATCATCAGGGCCGACCAGGCAGAAATGGCGGCAAGCAGCGAGCAATCCGTAGACGGTTTCAGCGGGTGAGGCTTCGATGATGAGAAAAACACTGCGCGCATTACTCATAATGTCCTCCGCGTTGTTCTTTATCAGTTTGGCAGGCTGCGCAGGATCGTCACGCCTGTCTACGGGTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //