Array 1 2669-1544 **** Predicted by CRISPRDetect 2.4 *** >NZ_QISR01000008.1 Franconibacter helveticus strain CS-23 Scaffold8_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2668 29 100.0 32 ............................. CTGTCGAGGTTATGGCGCAGGCCGCAGAACAC 2607 29 100.0 32 ............................. CGCATATAATTACTCACATGAAGCGCAGATAG 2546 29 96.6 32 A............................ ATGTACCAATCAGGGAACCCCTGTGCGCGGTA 2485 29 96.6 32 .........A................... ATATCACTAGCGTTGACGATGCTCCGTTTTGG 2424 29 100.0 32 ............................. GCCGTGACGGTATCACGCTGGCAGAAGCAAGG 2363 29 96.6 32 ...........A................. AAATTTTACGCCTCGAATGTAAAGATTTTACC 2302 29 100.0 32 ............................. ATTACCGGCAGCTCTGCGGCAACAATAGCGTC 2241 29 96.6 32 T............................ CAATCCATATAGTCGCCGTTCCTACTTTGAGC 2180 29 96.6 32 .................A........... CTCAGAATTCCATTTTCGTAAAGTTGAAAGCC 2119 28 96.6 32 ..........-.................. GGCAAATTTGGTCGCTAGGGAATTTGCTCGTA 2059 29 96.6 32 .....G....................... GTTATTAACCTCGCTGCGAAATCGACGTTTGC 1998 29 96.6 32 .C........................... CCAAAACAACAAAAGGAAGTGAAAATATTACC 1937 29 96.6 32 .C........................... ATACCGCGCGACAATGGTCGGGTTACCAGTAA 1876 29 100.0 32 ............................. CAGACATAAAGTTTTTGTAACCTTCAGTTGAA 1815 29 100.0 32 ............................. TATTTGGTACGGTCCATAGCGCCGACACTAAT 1754 29 100.0 32 ............................. TCCAGAGGGCCTCAATTGAGCCGTCACCAGTA 1693 29 96.6 32 ......T...................... TTGCATAGGGTCATTAAGGAGAGTGTGATGGA 1632 29 93.1 31 ...........AT................ GCGATGGGCGAATCCATAAAAAGTCATTCAG 1572 28 79.3 0 ...........CT....A.TA.-...... | G [1566] ========== ====== ====== ====== ============================= ================================ ================== 19 29 96.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTATACTGTGAGGCACCCCGGCAATGCCGGGGTTAGTCTTCGCTCGTTCCGCTCAACCAGTTTATAAAGCCCGCCCTTCCTATTTGTTTCTGCTGCTCAATAGTCAGCGCTTTATACCACTTATCAAAGATTTCACTCCGCGCGATTAATTTCTCCAGCCGGGCGCGTTTTGCTGCGGTTTCAGCGTTACCGCTGGCGATCTGTTGCGTCAGGGATTTAAATTCCTGCGAGGCCAGCAGACGATCAGCAAGAACGGTCATTTTATCCTTTGGCCTGGTTAGCAGGGAAATAGCGGTTGATGCCACGGCAGCGGCAGGCACGCCGCCCATAGCGCCTGCCGCGCCTGCGGCCGCCGTCTTGCCTGCGGCGCTGAAAATTTTAGCCAGCGCACCATCATCTTTATCGAATTTTTCAATAAGAGACTGTACGCGCCCTGTAGTAATTTCCTTACTTTTTGCGCGCCGTATGCCGTTCGCTACGTCGTAGATATTGCGCAGCCG # Right flank : GAGCCGGTGCCAGTACCTGTCGGCAACCTCGCGCGCCGCGATTGCGCAATAAACCGGCATCTGGCGCGGGCTTGCTTGCAATTGGCAGGGGCAGGCGACATAATGCCGCCTGCGCGTTTAACGACGCCCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTTTGTTTACCTGGTCAGGTCCGGAAGGAAGCAGCCAAAGCAAAGGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCTCCACCCATTTCAGGGTTAGTACTTGATAGTTAACACAAAAAGTACTGGCACCTTCCCGCCAAAGCTCCAGTGGTACAAAAATTGTGTATCACCTTAGGGCTGCACTATGTCTCTGATGCTCTCCAGACATGGCATCTGGTACTACCGGAAAGTTAACTTAATGCCATGTGGTAAACGTCGTGAATATCGTCGTTCACTTGGTACCCGTTCTAAAACTGAGGCCCTGAAACGTGCTGAACGTTTTGTAGATCGTCCGTG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5882-4326 **** Predicted by CRISPRDetect 2.4 *** >NZ_QISR01000008.1 Franconibacter helveticus strain CS-23 Scaffold8_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5881 29 100.0 32 ............................. GGTGGGTTAGAGACTGGCTGTCTGCCTACGTA 5820 29 100.0 32 ............................. GCATCTTTGACGGGGCGCAGCAAAGCAAGCGA 5759 29 100.0 32 ............................. GTGGGCGCGATCCGTTACTGCCGACGGCGTTC 5698 29 100.0 32 ............................. TGATAAACGACCAGGCTGACGCTGACGGGAGC 5637 29 100.0 32 ............................. CGGATACGCGGCTTATCCTGCTTATCGTCCGG 5576 29 100.0 32 ............................. CGTTGACTTCTGCGCATTGGGGATTTCGAAGG 5515 29 100.0 33 ............................. CTGGTTTGTGCCCTTCAACTTTGTCAAACGCGC 5453 29 100.0 32 ............................. GAAGAGGCACAACTGCGCCAGGGTTGGCAAAA 5392 29 100.0 32 ............................. AAATCTAAGATAATATTTTCGACTACTGATGG 5331 29 100.0 32 ............................. CCATCGGGTCATAGCACGAACCAGCGATTCAC 5270 29 100.0 32 ............................. CAGCAGGTATCGCAGAGGGCATCCTGCAAGGG 5209 29 100.0 32 ............................. TCCGGCTACCGATTTGCACAGGCCGACGCGCT 5148 29 100.0 32 ............................. TTCCATTGCATTGTTCATGACGCACCGCCTTC 5087 29 100.0 32 ............................. ACGCTTACGCTGAGGCGCTTAGTCCTGAGTTT 5026 29 100.0 32 ............................. TAGCTGTTTTTTGAGTAGTCCAGGAAAAGCTC 4965 29 100.0 32 ............................. CTCGCGGGCGGATTTGCTCGCAGACCGCAAAA 4904 29 100.0 32 ............................. GGTAAAGCCGGGCGCACGCAAGGCGCGAATTG 4843 29 100.0 32 ............................. CGTATTGAGCGCGAAGTGCATCAAGTGCTGGC 4782 29 96.6 32 ..........T.................. GATAGTGGCATCTGGGTCAATTTCAACTGGGC 4721 29 96.6 32 ............................T AAAAACGGTGCGTCGTCAATGCTGGTAATGTA 4660 29 96.6 32 .....T....................... CGGGCCATCTTTCAGCGTCTTCCAGTCACCGC 4599 29 100.0 32 ............................. CTACGCCGGAGTTTCTACCGGGCCGCCCGCTG 4538 29 100.0 32 ............................. CTTTAACGTTCGTTCTGCAACCTGGCGTTCGT 4477 29 100.0 32 ............................. GCATCCTCGCCAATCTCAAACATGCCACTCTT 4416 29 100.0 33 ............................. CGGCGTATGAGCAAGCCGCGCAGCTCGGCACGC 4354 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATATTAGCGGCGGGCGAGATAACCCCGCCGCAACCTGCTGCCGATATGCTGGCGCCTGCCATCCCTGAGGCGGAATCACTGGCGGAAGCGGGTTTCAGGAGCCGCTAATGAGCATGCTGGTTGTGGTAACGGAAAACGTGCCGCCCCGGCTGCGCGGCAGGCTCGCCGTCTGGCTGCTGGAGCTACGCGCCGGGGTTTACGTCGGTGATATTTCTCGCCGCGTTCGCGAAATGATCTGGCGCCAGATAACGGAACTGGCGGAAGAGGGAAACGTCGTGATGGCATGGGCGACAAATAATGAATCAGGTTTTGATTTTCAAACCTGGGGCACTAACCGCCGCGTGCCGGTAGATCTCGACGGGCTAAGATTGGTTTCTTTTTTACCTCATGAAAATCAATAAGTTATATGCTCTTTAATAATGTGGAGATGTAATTAAAAGGTTGGTAGATTGTTGGTGTTCAAAAAAGGTCATTGAAAACAGTTAGATAGCTTTAGT # Right flank : TTATTACCCCTGCGGCGTTCGTAACTAGCGGCTGCGGTATTTCTGTTTTTGTTAGCACACCTTCATCAGCGCGCTGTAAAAGATAAACAGGCTGGCGGTTTTTCAGCGCCAGCGCATCAGTATTTACTTTTCCTATATAAATCTTTGCGTTCTCGCAAGGATTCCCAAAATAAGGGTTGATGAATTGTGCTGTTGGGTTAGTTACTAACGCAGACATATTTGCACCATTTATATCTAATGATTAATAAGTTAGTTCGGGATATTAATAAACAAAGATGATCACTTTTAACGATCAATAAACCCATAACGATCTTTAATATCTATTTGATATTCATCCGGGCAGCGCCATAACCTCAAGCGGGAAAATAATTAGGGGCTAAAGGATGAGAATAAGTATTGTTTTTACATATAACGCCCAAAACCGGGACGTTGTAAAAAGCTGGATTCAAAAGGCTGTTGGCGTGGGTTGCCGGGAAATTATTACGGTTAATGAAGGTGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //