Array 1 62621-62875 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386771.1 Thioalkalivibrio sp. ALE19 F787DRAFT_scaffold00015.15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================= ================== 62621 28 96.4 29 ....................C....... TGGCCCCTGAATTCGACCCGTGGAGCGCC 62678 28 100.0 29 ............................ ACCACCCTCGAATCGACCCGGCGAGGGTT 62735 28 100.0 29 ............................ ACCACCCTTGAATCGACCCGGCGAGGGTC 62792 28 96.4 28 ...................A........ ACGGCCTTGAATGGATCCGGCGAAGGTT 62848 28 82.1 0 ....................C.G.GAT. | ========== ====== ====== ====== ============================ ============================= ================== 5 28 95.0 29 CATTTCGCGCCCGCGAAACGAGCCCCGA # Left flank : AACCCCGTCGTTTCGCATGCGAAACGCGCCCCGAACCACCCTCGAATAGACCCGGCTAGGGTCCATTTCGCGCCCGCGAAACGCGCCCCGAACGGCCCTTGAATCGACCCGGAGAGGGCCCATTTCGCGCCCGCGAAACGAGCCCCGATGGCCCCTGAATTCGACCCGGCGAGGCTCCATTTCGCGCCCGAGAAACAAGCCCCGACAGCCCCTGAATTCGACCCGGTGAGGGTCCATTTCGCGCCCGCGAAACGAGCCCGATAGCCCCTGAATCCGACCCGGCGAGCGTCCATTTCGCGCCCGCGAAACGCGCCCCGATGGCCCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : ACTATCGGTTTTGGCGCCCCCCGGGAGGCTTCTTGAGCGTGATGAGCGAGCATAAAAAAAGCGCCCAAAAGGGCGCCTTTGCGATGCAACGAATTGAGAGCGGTTAGCCGCCTTTGGGGATCTTCCGAACGATTTCCAACGGCGTCGCATCCTCGTTGCTGGCGATCCCTCGGACAAGCGCCAAGGAGAGAACGCCACCACCCCCGGCCATCTCATGGGTCCGCAACTTGTCGATAAGAAGCTGCTCGGGGTCTTCCGCCGCCTTTGCTTCGTTAAAGACGTGATCGAGCGTCTCTTGCAGAGCCTCCCGTTCGTCCAAGTCCATGCGGCTCAGTGCATCTTCCCCGCTCAGTTTCTTGTTCACTACGAGCTGGTGGAAGGTGTGGATCGGCTGGGTTTTGCGGGTGGGGTTTGGCATCCGCGCCGGCTTCGGCTTGAAGTTCTTTTTCTTCTTGGGCGCCTTCCCGGTGGTCTTCGGGACTTGCTTCTTCGTCTCGGCC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATTTCGCGCCCGCGAAACGAGCCCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 16037-15641 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUAG01000040.1 Thioalkalivibrio sp. ALE19 F787DRAFT_scaffold00038.38_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16036 29 100.0 32 ............................. TACGTGATCCCGCGTTTCCGCTACGAGGATTT 15975 29 100.0 32 ............................. AACTTAAAGGGCGGGCCGACCGTCCGGGGGGG 15914 29 100.0 32 ............................. GCATCAGCGAGTCCGAGAAAGACGAGGGCCAG 15853 29 100.0 32 ............................. GGCTTGGGGTCCTTGGGAAGCGGCCAAACCAC 15792 29 100.0 32 ............................. GAGGTCTCGACCGGGTACTTTGCGGAGTCCGA 15731 29 100.0 32 ............................. AGGCCGGAGTACTTTGCTCCGGATGACGATGA 15670 29 96.6 0 ............................C | T [15646] ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CAGCGGCGCGAATAACGTTAGGAGCGTTTGAGCGAATGGGGGAGGAAGCGGAGGCGTTCTCGAGCCACACCTTCGCGATGATGAAGAGCAGTAGCCCAATTCGCCGGGCGGAACATGCTTAACCCCGAAGGGCGGTACTACGTGCCGCCCTTTTTCGTGGGTGCGCACGCGCACAGCGACCGAGTCGTCGTTCGATACGACGATTGCGGCGACTATGTGGTTCAAGAAAAAAGACAAGCTGGAAGCGATTAAGGAATTGGGCGAAAGAGTGGCCCGGTAAGACGAGAAAGGA # Right flank : CATGCGATTCCTGCGCCAACGCGTCGCCGACGCCCTGCGCAATCAAATGAATTCGGAAAATTCGCGGAGTCGCTGGGCGGTCACCACCAGGCCGTGTTTCTCGAGAGTGTCGATGTAGGCATCGGGGCCGACTTCCGGATTTCGCAGGGTGCCGCGGTGCTCTTTCGCTGCCGACAGGACCCAACTCTCACCGAGGTCCAGCTGTTGCTCCGCGAAGACATCCGGGTGCAGCGCCTCCAGGATGTCGTCCGTCCACTTCGCGGCGAAAAGCCCGGTACGGGCAAGGCGGATCAGGAAGTCACGCAGTGGGGCCGGATACAGAACGCAGGCATCGTAGATGACGACGAAGCGCATGTATCAATAGCCCATGTCCAGCTCCTGCGCTTGCGCGGCCAGAGCATCCATTGCTTCGCGGCTGTCGGCGTCCATGCGCGCCTTGTAGTTCATGAGGTCTTCATAACGGATGCGGCGGTGCGTGCCGGCCTTGCGAAACGGGATAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41605-41933 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386770.1 Thioalkalivibrio sp. ALE19 F787DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 41605 37 100.0 36 ..................................... GCCCGCCAACAATGCGTACCTCGCGGCGATACAGCC 41678 37 100.0 35 ..................................... AACCGTCTCAGTCGTTTATGGATGAAGACAAGGAG 41750 37 100.0 36 ..................................... GAGGATCTCAGACGAGAGGTACTCGGAGGTTTCGAG 41823 37 100.0 36 ..................................... AAGAACTGCTCTACTGGGAAGTGGTTGGAACCACTC 41896 37 91.9 0 .............C.....................AT | C [41909] ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 98.4 36 GGTGGAAGAACTGTCCTGCGGGGCAGTGGTTGGAACG # Left flank : GGTCAGCCGGCGCAGCGTGGACAGATCCTGGGTGTAAGAACTGCCCTTTGGGGGTGGTGGTTGGAAGACGGAAATCGGAAACCGGTTGGGGCCGCCGAACCGAGGTCGAAGAACTGCCCTCCGGGGTAGTGGTTAGAGGCTGAGCTACCTGCTAGGTAGGTGAACGCGCATAAAGGTGAAAGAACAGCCCTTCGGGGCTGTGGCAATCCAACGCTGATACACGCAGCGTCGATCTTGGACAATTTGAGAGAAACAGCCGCCCTACTGGCACCAGGATCGGGTGCATCCCGTCTGGATTCCCAGTACGGACCGGCTCTGATGTCGCCGCTGCCACGCGAGCACCGCTCTGGCGCTCCCCGTGCCGGGGAGTGCTCGTTGGCGCAGGGATGCGGTGTGTGGCAGATTGCGAATACCGTCGGGGCATCGGTTCAGGCCGAGAAGGTGGACCGCTCGCAAATGGGGCTCGAGAGCCGAATTGGTGGCGGGGTGCAACGAAGTCT # Right flank : TCAATGACAGCTCTTCGGCTTTGCTGTGGGGGCAACGGCGCAAGAACAGCTTTCCGGCTGTGGTAACCCAACGCTGATCCATTCAGCGTCGATCTTGGACAATCTGGAGAAACGGAACCGCCCATAATGGCGCCAGGATCGGGTGCATCCCGTTTGGGTCCCCAGTACGGACCGGCTCTGATGTTGCCGATGCCACGCGAGCACCGCTCTGGCGCTCCCCGTGCCGGGGAGTGCTCGTTGGCGCAGGGATGCGGTGTGTGGCAGATTGCGAACACCGTCGGGGCATCGGTTCAGGCCGAGAAGGTGGACCGCTCGCAAATGGGGCTCGAGAGCCGCATTGGTGGCGGGGTGCAGCGAAGTCCGGTGGAAGAACTGCCCTTCGGGGTAGTGGTTGGAAAGAGGTGTACCGCCCCCGGATCCCTGGACACCTCGTGCGGGTGGAAGAACTGCCCTTCGGGGTAGTGGTTGGAAATGCAGCGCCTGCACGGTATCCAGCATCT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGGAAGAACTGTCCTGCGGGGCAGTGGTTGGAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 93723-96226 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386770.1 Thioalkalivibrio sp. ALE19 F787DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================ ================== 93723 27 100.0 32 ........................... ACCGCGCGGCAGGGGTTTGCGCGGCCCTCCGG 93782 27 100.0 32 ........................... CCTCGATGCGGAGGCCCATCTCGTACTGAAGC 93841 27 100.0 32 ........................... CGGCGCTTCGCGCCGCATGGTCCGCTCGCTCC 93900 27 100.0 32 ........................... TGCCGCGCGGTGGCTCATCCAGGGATGAGCCA 93959 27 100.0 32 ........................... CTGATGGGCTTCGACGACAGCTTCCGTATCCC 94018 27 100.0 32 ........................... ATCGAGGATTCGGGCGGAGAGGTGGATCCTCG 94077 27 100.0 32 ........................... TGCGCCAGCTTCCGGCGAATCTGCTCGATTTC 94136 27 100.0 32 ........................... TCGACCTGAACGCACCAGGTCTCGCCCTGGGC 94195 27 100.0 32 ........................... CATCGGTGGGTGGCTCATCCAGGGATGAGCCA 94254 27 100.0 32 ........................... TCCTCGGGTGTAGAGGCGAGTTCGGGTACTCG 94313 27 100.0 32 ........................... GCAGTGTGGGCGCATATCACAGGCTGATATGC 94372 27 100.0 32 ........................... ACACCCGGACGCGCGTGCATGCGTCGGTAAGC 94431 27 100.0 31 ........................... GCGATCCGGGACGTGAATGAGCACTCCGACC 94489 27 100.0 32 ........................... AGGACCAGGAGCAGCACACCCGGCCAAAGGGG 94548 27 100.0 32 ........................... TCGTAGTGCTGGAGCTGATCGCGAGCGAACGC 94607 27 100.0 32 ........................... TCCACCGCCCAGCTATCACCCTCCCCAATGAT 94666 27 100.0 32 ........................... GACCATGTGGGCATGACCTGGTGGAACCGGCT 94725 27 100.0 32 ........................... ATGCCGGGTGACATGGATGGAAGCCAGCGTCT 94784 27 100.0 32 ........................... ATCTCTTCCAGCAGCTCGAGCTGCCAGTCGTC 94843 27 100.0 32 ........................... GACTGGATCGGCATGACATGGTGGAATCGTCT 94902 27 100.0 32 ........................... ATCGACGCATACCGCGCGTATATCGCCTTCTT 94961 27 100.0 32 ........................... TTTGAGACCGCCGACCCGGCTGACCTGGTTCC 95020 27 100.0 32 ........................... AGGTCATGCCGATCCAGTCGGAGTGCTTCACT 95079 27 100.0 32 ........................... TCCCCCCAGACCCCCCTCCGGGGGCATCTTCA 95138 27 100.0 32 ........................... GTGAATGGCTCCGTGATGCGCCTTTGGGTGAT 95197 27 100.0 32 ........................... ATCCGGAGCAGATGGGCGGGAGCAAAGACTCC 95256 27 100.0 32 ........................... CCACGCCGGGGGTTGATGGGCACAGAAAAACC 95315 27 100.0 32 ........................... GGAGCGGATCGGCCCGGCCAGACCGCGGAGCG 95374 27 100.0 32 ........................... ATGCGTAGTCGTTCCGGTTCTGCTCGACCCGT 95433 27 100.0 32 ........................... ACCGTGCCGTGGCTCATGTCGCCGCGCTCCCG 95492 27 100.0 32 ........................... AGTGGTTTGGCACGTTCAGGAATCGACCGGTT 95551 27 100.0 32 ........................... ACCGCGCGGCAGGGGTTTGCGCGGCCCTCCGG 95610 27 100.0 32 ........................... TTGCGCGGACCATCGCGACGGTTTCACCGCCC 95669 27 100.0 32 ........................... AACCACGCCTGACCGATGATGTCGGCCCGGCC 95728 27 100.0 32 ........................... TCACGCTGATCGGCGGGATCCGTACTTCAGTG 95787 27 100.0 32 ........................... GTCACCTGGCGTCGTGGGGTCTTGCCGGTTTC 95846 27 100.0 32 ........................... AGCGCCGCGTACCACGCTGGACTCTCACCATT 95905 27 100.0 32 ........................... AGCGCCGCGTACCACGCTGGACTCTCACCATT 95964 27 100.0 32 ........................... ATGCGGAACTTACGCTGGGTGCCGGTCGATCC 96023 27 100.0 32 ........................... ACCCGGTGTGCCGACGCATGCACGTTCGGCCG 96082 27 100.0 32 ........................... GTCCCCGAGGCTGACCACGAGCCTGCACCCAC 96141 27 100.0 32 ........................... AATACCGGCGATCACCCGGAGTGAGTGCATTC 96200 27 74.1 0 ...................GAA.ATCA | ========== ====== ====== ====== =========================== ================================ ================== 43 27 99.4 32 GTTATCCGCCGCATGGCGGCTTAGAAG # Left flank : TGTTCGGACTGGGCATTGAGACCGCGAAGCAATTTCGACTGATGGCGCCACTTCGTCAGAATCTTGCACTGATCCGAGAACTTCAGTGATTCCCGACGCTCGCCCCAGGCCCGGCGCCGTTCGGCCAGCGCCTCATTCCACAACAGGCAATGGACCCAACGCTGGTGCTCCAGGGCGGCCAGTTGTTCCGCCGTGGGATAAAGCCGGTATGTGACTTTGCGCTGAACCATCGTGGCTCCAATATACGCCGAGCATCCATTGATGCAATTTTTCTGGCGGGACCGCCCTGCGCCGCTTCACCACCCCCTAAGCCGCTGCGCGGCTATAGGCGGAGCACTGCGGCGCGGATTGGTAGCACCAAGAAATACGATGTTGGAAGTGCGGGATATGAGATGATCGAAAAATCAATCGCTTACAAAGACCGTACAGAAAACATCGTATTTCGGGTGTTTGTGCGTCTTTCGTTAATCGAAAGAGAGGTTTACGATAAAATGCGCCGT # Right flank : ATTAGCAATGTTGGCGGCTTAACGGCCGCCTTCCCGATCATCAAACTGAATCATCGAATCAAGAACATACGCCCCGCACTCGATTTCCATCGCACGATCGCCATATTCTCGGAACTCACGGCGAACATCATCAAGGCTTTGGGACAGCCAGGAAGGAGAACCTTCAACGACAGAGACATCCTTGACCGGGTCGAGAATCGTGCTTGTGACGTTTTTTAGAGACCAGTGCTCATCTTGTTTTACGAAACGAAGGAGAATAGTTTTATTATCCCGAAGGGGGAACTTCTCGTAATGTGCGAGGCTTATCCAGTCTTTTTCATGTCCGTCCCGCGATTGAATCGCATTCATCCCGTCAAACATCGCCCTCTCAACCGCGCGGTCATCAAGATCGGCAAACGGCGTTTTGGGCGTGGATGTCGAGCCGAATTTCAGCGTAGAGGTCAAGGGAAAGTCCTCGGATGAAAAAGATTCGCCGCCTGTGTTGAGGAGATCCGTCATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGCATGGCGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTATCCGCCGCGTAGGCGGTTTAGAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.80,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //