Array 1 27470-25923 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSLV01000032.1 Staphylococcus pseudintermedius strain GL007B NODE_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27469 36 100.0 29 .................................... TGAACATTACCGAACCCTCTTGTGATTAA 27404 36 100.0 30 .................................... GCGAACAACGGTATGCTTACGATGTTAGGT 27338 36 100.0 29 .................................... ATGAAGATGGATTTTCTATTATTGCAATG 27273 36 100.0 29 .................................... TCGCATTAATCAAGAATCAAAAGGGTTGC 27208 36 100.0 30 .................................... AAAAAGCCAGTACAAGGTTCTATGGTTTCA 27142 36 100.0 30 .................................... ATTAAGAACAATATAAATGTATCGATTTCA 27076 36 100.0 30 .................................... GCAATGGATCAATTGAAGGCTCGTCAACAA 27010 36 100.0 31 .................................... GTGTGTCATCAGACTTTACACCTTCAAATAC 26943 36 100.0 29 .................................... GAACTCTTAAAGTATCTTTTAGGACACTT 26878 36 100.0 30 .................................... AAAGATTATGCCATCTTCAGTTACTTTAAC 26812 36 100.0 29 .................................... TCGTTTTGTGATAACAAATCAAGTGATAT 26747 36 100.0 30 .................................... GATTATGGTGTCGAATCAAAATCAAATTAC 26681 36 100.0 30 .................................... GATGAGAGGTGTAAAAGCACAATTGCATGA 26615 36 100.0 29 .................................... TATACGTGCAAACGGTTCTCTTTTAATTT 26550 36 100.0 30 .................................... CGGCACAGATTGTGTGATTTGTTGACCTGC 26484 36 100.0 30 .................................... TCAAAAGTATTTCGTCGAGATGGAGCGACT 26418 36 100.0 30 .................................... TGAAGATTTTCCACGCCAATGTATTTTTAT 26352 36 100.0 29 .................................... TAAAATCAGAAACAAAAGGGCAAGCGGTT 26287 36 100.0 29 .................................... CATTACCTTTGTTTGCGTTGTTTGATTCT 26222 36 97.2 29 ............................A....... GTTAACTGAACTCGAGTGTTGGCGCTTGA 26157 36 97.2 30 ............................A....... ACAGGCTTAAAGAATCATTACAGTTTGCTA 26091 36 97.2 30 ............................A....... TTGACCGTGCAAAAATTAATCACAAGGCGC 26025 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 25959 35 83.3 0 T........T................-.CA.C.... | CT [25926] ========== ====== ====== ====== ==================================== =============================== ================== 24 36 98.8 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : ATGTTTATTTAGAAAGAGGTAAAACTGTTTCTGTTTGTTACTTTTATTCTGTA # Right flank : CTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 35214-36632 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSLV01000002.1 Staphylococcus pseudintermedius strain GL007B NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 35214 36 100.0 37 .................................... AATTAGTAGAAAAGCATATGTATAAATTAAATAAGGA 35287 36 100.0 35 .................................... GTCAACCGCTTCCAACCTAGTAAAAAAGTTTTAAA 35358 36 100.0 38 .................................... AAAAAGTCTGGAATAATAAAGGTACTCTCGACTCTTCC 35432 36 100.0 37 .................................... AATTCCTCTCATTTAGTATATATTAATAGTAACATGG 35505 36 100.0 42 .................................... TCAAAAAGACTTACTCAAAAAATTGTTTTAGTAATTTAGTCA 35583 36 100.0 37 .................................... GTAAAGATGTTTATACATAGTTTTGAAATGTTTATAA 35656 36 100.0 37 .................................... TTTATATTTGTTTGATAATCGTTTAAATTATACATTA 35729 36 100.0 35 .................................... CATATCCTTTTTTTATATATTTTTTGTAGGGGTTT 35800 36 100.0 35 .................................... TGAGTTTCTTTGTATAGATATTTTTTCATTCTAAT 35871 36 100.0 36 .................................... ACACTTTTGGTTAACTTTTTTAAATTTCTTTTTTTA 35943 36 100.0 38 .................................... TCTGAAACTTTATGAGTCGAATCGTCTCCTCTGTCACC 36017 36 100.0 36 .................................... CCTCAACTTAAATCTCTATATCATAATAAAAACATT 36089 36 100.0 38 .................................... GAAGAAATTGTTCTTCTTATAAAATTCAATTGACCCGT 36163 36 100.0 36 .................................... AATTCATCAGATTGCATCAATTTTTGAAATTCTTCT 36235 36 100.0 37 .................................... CTCCTAAAATAATTTTATATATAATAAAAACGCCTAA 36308 36 100.0 36 .................................... TATCATCTAGGTCGTATAGGTCAGTTCCTACAAGGC 36380 36 97.2 35 .........................A.......... ATCTTCATAAATGAATAAGTTTTTGCTTGGGAAGT 36451 36 100.0 38 .................................... TACCAGTCGGGTTTTTATATTTATGAACTTCATCTAAA 36525 36 97.2 36 ............C....................... TTTGTGTTACTCGGAATCAGGTACCATTCTGTGTCT 36597 36 94.4 0 ............C................T...... | ========== ====== ====== ====== ==================================== ========================================== ================== 20 36 99.4 37 AATCGAATAGAGACCCCGATATTAGGGGACGAGAAC # Left flank : GTGAAAACTGGAGATGAAGTCAAATGTGTAACGTATAGTTGAAAGGTGGTAATACAGTGGTTTCGGCAATTTAATAGGCGATGGAAATGTCAAGGCACAATGCATATTCCGATTATTTTTTTAAATACGAAGAAGTTAGGAATAAGCAAATATTGAAGTTTGCACAGCTACAGTATATTCGGCCAGATGTTAATTATTAAAAAGAAAGTTCCAGTATTCAAAGGAAGAGTAGAAAATGTATGATAATTATCATTAACAAGACTTCGTTTAATTGAAAGCGTTTAAAAAATATAGAAGAAAGTAATCATGTGAATAGGATATGAATTAAGAAAGGTTTATTGTATAATATCTATGATATGTTTTGAAATATTTATAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATAGTGGTATTTTTAATATTAAATTTGTCTTATTTCTAGACATGATTAAAGTATAGTTATCTTCGTTATCAAGGTGTTTCAACAGCTGACT # Right flank : CAGAACTTTCAATGTGAGTTGTGACCAATGAAGTATTTAAAAATGATGAGAGATATAGAAGTATGAAGGCAACGTTTTAAAAATTACAAATAATTCACAATTCTGTTGTTGCAAACAAATAAATGTTGTAAAATTAAATTAACATTTTAAGCGATAAAATGGGGTCTTATACTTTTTTGGTGAATGTTTGTATTTTTGCATATATTTTAGTCATAGTTATTTAAAGTGTAAGTATTAGTGCTTTTGATTAAAATTTTGAAGAAATAATAAGTGATTAAAAGATGTTGAGATTGAATATACTACTGTATTGATACAATGACTCACTGAATAGTACCCTTGTTTTTATCTAGGGAGGTGTAAAAATGAAAGATATCATTTACGTTGAGAACCATCATTTTGTCAGTGTTAAAGGGGAAAGTATCAAGTTTAAAAATATTATTGATAAATCAGAGCAATATTTTTTAGTAGATGATATCGAAGCACTGATATTTGATAGTCAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAATAGAGACCCCGATATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //