Array 1 120995-129139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXJW01000002.1 Lactococcus piscium strain DSM 6634 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 120995 28 100.0 33 ............................ CACTTTGAACAGTTGTAGTAACAGCAGTCCAAA 121056 28 100.0 33 ............................ TGAACCAATCTGGGCAATCAATAGTAACTTTAG 121117 28 100.0 33 ............................ TAGCGCCCAAACTATCATGCGCAACCTCTCGGC 121178 28 100.0 33 ............................ TAAGCGGTAAAATAGTACTATGATGATTGTATA 121239 28 100.0 33 ............................ TGACGTTTGAAGAAGCAATCGATATTATTGAAG 121300 28 100.0 33 ............................ TTAAATTTCTAATTTCATACAAGCAAAATTCTT 121361 28 100.0 33 ............................ TTCCTGTCCATAATTCGCTAAACCATGTACCTA 121422 28 100.0 33 ............................ TTCAATGACTTCAAAGGACTAATGCAATCTTTC 121483 28 100.0 33 ............................ CATAAGTATCTTGATGATACGGACTATTCTCAG 121544 28 100.0 33 ............................ CACACATAGTTCTCCGTTTATCCGTTTTATTAA 121605 28 100.0 33 ............................ TTTCAATCTGTTTAACAGTTTCTCGTGTTTCCA 121666 28 100.0 33 ............................ CAGAAAAAGACGATGAGGGCCAACGATTGTTGG 121727 28 100.0 33 ............................ CTAGATACTAAATTTTATGATGATGTAAAAAGT 121788 28 100.0 33 ............................ CGTTGTTGACGAACAAATACCCCAACAACAAAC 121849 28 100.0 33 ............................ TAAAATGGATGGCGATTACACAAGTAAAGTTGA 121910 28 100.0 33 ............................ TAGTGGACAATTTAGGCGACTACTCGCCAGAAG 121971 28 100.0 33 ............................ CATCAGTTCCTGTTCGCTTACTCAAGGTCATTA 122032 28 100.0 33 ............................ TAGCCTGATGTAGCTACTGATTGACCGCCTACA 122093 28 100.0 33 ............................ CAGTTTTTCGAATGTCAGCGCTAATTTTTTACA 122154 28 100.0 33 ............................ TGAAAAAACTCAAAAAATCAGTAGCAGTCTTAG 122215 28 100.0 33 ............................ CTGACCTTTTTTAACCCAATTTGCTAAGTTTTC 122276 28 100.0 33 ............................ TATCAACAGCTCAACAGCTATTTCTCCACAGAT 122337 28 100.0 33 ............................ TGAAGTTGGCGAGTTCGCAACGGTACGATATTA 122398 28 100.0 33 ............................ TTTCCAACGCTATAAATGGGGAATATGAAAATG 122459 28 100.0 33 ............................ CCTATCAAGTGGGAGGTAAGTTCTGTAGAGGTA 122520 28 100.0 33 ............................ TATAAATGCTGGGACTTAGTTAACTGGTACGTA 122581 28 100.0 33 ............................ CAACTCCCGTTCTAGCTAGTTCAGACTCATTAC 122642 28 100.0 33 ............................ TAGCTATTTACTCTCTCCCATTTGACATATTCC 122703 28 100.0 33 ............................ TGAAGCGGATTTCATTCAGATAAACACTGACAT 122764 28 100.0 33 ............................ CACACTTTTTACAAGCTTTACTACCTAATCGCT 122825 28 100.0 33 ............................ TTTCACTCGTTATCCTCAACTGGAACAAGCTCA 122886 28 100.0 33 ............................ TTGAGGAAAAATTGAAAGGGCGGTATAAAAATG 122947 28 100.0 33 ............................ TCAGGTGTCGATTCCCTAAATCTGTTATCGTGA 123008 28 100.0 33 ............................ TAAGTCTCAGCTGGTGTTCCGTTGAATTCTTTA 123069 28 100.0 35 ............................ TAATCGTGACAGCGTCTACACGCAGAACAATATCA 123132 28 100.0 33 ............................ CTTTGAAGATATAGCAGACACTAGCACAGGTAT 123193 28 100.0 33 ............................ TCGCAAGGTGTTTCAAGGGTTGATACGTCAAGT 123254 28 100.0 33 ............................ TATCTTAACGAAAAAACTGGAAGAAGTTTCAGA 123315 28 100.0 33 ............................ TGACATTTGAAGAAGCAATTGAAATAATTGAAG 123376 28 100.0 33 ............................ TAAATCTTTTGTTCTGCAATAGTCGCATCAAAC 123437 28 100.0 33 ............................ TAGCCTTAGATAATTTAAGAAACTTTTGTTGAC 123498 28 100.0 33 ............................ CGGCATTACCCGCTTGTCACAATATAACCATAC 123559 28 100.0 33 ............................ TGCTGAAACAACTGCTATGATAAGAGTAACTAT 123620 28 100.0 33 ............................ TCAGCCATTTTTCAAAAGCTTCTAGTTTCTCTA 123681 28 100.0 33 ............................ CCGTTTATCGGCCATTTACACCCCCAAACACCA 123742 28 100.0 33 ............................ TGCAGCGGCCGTTAAATCATGCAACTTAGATAA 123803 28 100.0 33 ............................ CGAATACAGCGCAATTGTGTTTAACTTACCTCA 123864 28 100.0 33 ............................ TACCAATCAAAGCACCCTTTTTAACCCAGTTTG 123925 28 100.0 33 ............................ TAAAGCGCTTCTGCTTTGCTATCGAACTTTATG 123986 28 100.0 33 ............................ TATATTCAATAGGTTTAGATATCGAGAATAAAA 124047 28 100.0 33 ............................ CAGGAGCTAACCTCTCTCGCTGTCTGCGTTTGC 124108 28 100.0 33 ............................ TGGAATAGACCCGATTGGCTATTACAATGGGGC 124169 28 100.0 33 ............................ TTAAGATAATCGCACCAATTGCAATTCCGATAC 124230 28 100.0 33 ............................ TGAAAAAAATCACAATTTTAGGAATCGTTTTAT 124291 28 100.0 33 ............................ TACAGATGCGATATTCTTCAAAAACGGAGTCGC 124352 28 100.0 33 ............................ TCGCTATGGTATGCAGATCACAGTCGCTACTAA 124413 28 100.0 33 ............................ TTAGCAAACCCAACATTCACAGAGGTTGATTTT 124474 28 100.0 33 ............................ TAAAATAGCCACTGATAATCTTCTTATCAGTAG 124535 28 100.0 33 ............................ TTCTTGACGGGTCTAAAGTGTTACAGTCTGATG 124596 28 100.0 33 ............................ TACCCTCTAGTCATATATCGCGCATAACTCACA 124657 28 100.0 33 ............................ CGGAAGAGAATCATCATTCAAATCCATTGGCGA 124718 28 100.0 33 ............................ TATACAGGACTTCATTTCCATGGAAGGTAAGTT 124779 28 100.0 33 ............................ TTGATATCAAAAGAACACACCGTAAACGTGAAC 124840 28 100.0 33 ............................ TGTCTCCTACTGCAAAACTGCTTTATTTTTATC 124901 28 100.0 33 ............................ TATCCATGAATTATCTCCTTAAAACGGAAGAGA 124962 28 100.0 33 ............................ TGGCTACATGTATTTTTCAAACTTGGATAATTG 125023 28 100.0 33 ............................ CCCCCAAACATCACGATAGCCGTCTGGCTTTTC 125084 28 100.0 33 ............................ GGTGTTTCTATCAATTTTAGTGATTGAACTAAA 125145 28 100.0 33 ............................ TGTTTTACTTTTATTCATTCTTCCGCCTCATGA 125206 28 100.0 33 ............................ TATTCAGCAATCCAGAAAACTTTACAATTTCAG 125267 28 100.0 33 ............................ TAGTTAATTAAAACTGCTTACGAAAATTATCAA 125328 28 100.0 33 ............................ TAACCGATATCGGCAAGAAGTATTTGATCATCA 125389 28 100.0 33 ............................ TACTTTTTATCGTCTGCCAATTCAACCCCCAAA 125450 28 100.0 33 ............................ TTCGGAACTGGCGTGACATTATAGTCAGGATAC 125511 28 100.0 33 ............................ TACCGCTTCATTAACTCGCTCATCGGCTGTTTT 125572 28 100.0 33 ............................ TCGCTGACTTCGATAAGCAAGCATACATTGAGC 125633 28 100.0 33 ............................ TCGCTGACTTCGATAAGCAAGCATACATTGAGC 125694 28 100.0 33 ............................ CTTATCCACTTGAAAAGCCAGACGGCTATCGTG 125755 28 100.0 33 ............................ TGCCACTTAAGTTTTCACCGTATTGAACCACAT 125816 28 100.0 33 ............................ TCGTTTCCTTTCTATTCGGTCATCCGAACTTTA 125877 28 100.0 33 ............................ TTCATGCCCGAAAGCATCAAGTAAAGCCTGCGG 125938 28 100.0 33 ............................ TAGATGACATAGAAATTTACTCGATCGGACTTG 125999 28 100.0 33 ............................ TAGCCTTTTTATTTCAGACTCAGCCTGTTCTAT 126060 28 100.0 33 ............................ TCCAGACAAACGTCCGACAAACGTACACCAGAG 126121 28 100.0 33 ............................ TCATCAAGCGTATACCCTTCGGAAAACCTATAC 126182 28 100.0 33 ............................ TGAACTTGACGGAAAATACGACTCAAGTCGTAA 126243 28 100.0 33 ............................ TAAAATCTTATGAAGAAGCTGGAAATTACTTGA 126304 28 100.0 33 ............................ TGATTGAATTTGATAACGTACGTGAAGCTTTAG 126365 28 100.0 33 ............................ TAGCGTATAGATTTTGAAAACCTAAATTACGAC 126426 28 100.0 33 ............................ CCAGATTGAAAAATTTCCATGAGTTAAATTATT 126487 28 100.0 34 ............................ CTTCACGCTGTAGGCTCTCATTTGCACGCTGTAG 126549 28 100.0 33 ............................ TATAGACAGCTTGCGAGATGAAAGAGATTCTAT 126610 28 100.0 33 ............................ CATACAGTCATAAAGGTTTCTAAAGAAACAAAC 126671 28 100.0 33 ............................ TGTCAAGTGTTTTCTCCAATTATTTTAAATAAT 126732 28 100.0 33 ............................ TTCATTTTGGTTAAAATAAACATTAGATACCGT 126793 28 100.0 33 ............................ TTTCAAAGGCATTAAAGACAAGCGGGTATTACC 126854 28 100.0 33 ............................ TAAATACAAGACAGAAAAATTCATTTCAGAAAG 126915 28 100.0 33 ............................ TTAGTTGTTCTAAAGCTTCACGTACGTTGTCAA 126976 28 100.0 33 ............................ CGTCTACCTATTTCCCAAATCAAGTAATTTCCA 127037 28 100.0 33 ............................ TACACCTGTAATACCGCTCCAAGCATTAGATGC 127098 28 100.0 33 ............................ TGAAGAAGCAAGTCAACGTGAGCAAGAAGAATA 127159 28 100.0 33 ............................ CCTAGTGCCGTGTTAGCATCGGTCAGTTGATTG 127220 28 100.0 33 ............................ TTTCAATCAAGATTGAATCTAGTAACTCCGCTT 127281 28 100.0 33 ............................ TATTTATATAGGGTGGATGGTAGGGAAAAGAAA 127342 28 100.0 33 ............................ TTTGACATATAAAGAATTTTGCTTATATGAAAT 127403 28 100.0 33 ............................ TGACATAGTAAAGCCGTTTGTTGCATTTGCTAC 127464 28 100.0 34 ............................ CAGGTGATAGCTTTCTATCGTTTTCAAACTCGAT 127526 28 100.0 33 ............................ TGGGTTGAGACCTCGTTGTCTTGCAATTTCCAA 127587 28 100.0 33 ............................ CAATCCAGACTATGACAGACCAGTGATAAGAGT 127648 28 100.0 33 ............................ TGACCAAAAAGGTGCGCTATACGAAGAATTGAT 127709 28 100.0 33 ............................ TATTTTTAATGCTGGGGCTAGTTTTAAAAGCAG 127770 28 100.0 33 ............................ CTTAACCGCATCCCAATCCATGTCCATCGTCTT 127831 28 100.0 33 ............................ TCAGCATCGAAAATCGCAGTGCTATACAGGCAA 127892 28 100.0 33 ............................ TAATTTGATAAAAAGCAAGTTGAAAAAGATTAC 127953 28 100.0 33 ............................ TCTTTATCTGCTCACGCTTCACTTTGTTAGTCT 128014 28 100.0 33 ............................ TGTTATTGTTGGCTTTTTACCCTTTCCGTTGCT 128075 28 100.0 33 ............................ CAGCTGAACTAGTATACTTATAACCTGTTTGCC 128136 28 100.0 33 ............................ TTATGCTGGTAAGCTAGGCGAAACTTACGTATT 128197 28 100.0 33 ............................ CTACAAAACCACGGACTGATAAATATGTACCAA 128258 28 100.0 33 ............................ TAACAAAAGGTCAACGGATTAAAATGACCACAA 128319 28 100.0 33 ............................ TTATGCTGGTAAGCTAGGCGAAACTTACGTATT 128380 28 100.0 33 ............................ TATTCGTCATTTATATCAGTATTTATCTGGATC 128441 28 100.0 33 ............................ TAACAAAAGGTCAACGGATTAAAATGACCACAA 128502 28 100.0 33 ............................ TGGAAAATTTAGTAAACAAAGTACAAGAAATTC 128563 28 100.0 33 ............................ TTCAGTACTGCACTTGCAGTCTTCGACGGCATC 128624 28 100.0 33 ............................ TGACAGTGATTTTTGCAAAGTTTTTTTTGATTC 128685 28 100.0 33 ............................ TGGAAAATTTAGTAAACAAAGTACAAGAAATTC 128746 28 100.0 33 ............................ TAAATACTTGACTAACACGGGAAACCGTGTTAT 128807 28 100.0 33 ............................ TGACAGTGATTTTTGCAAAGTTTTTTTTGATTC 128868 28 100.0 33 ............................ TATCATAAATGACAGGAATCTAGGAACGGTCCA 128929 28 100.0 33 ............................ TATCTTAAATTCATAATCGCCGATATTATTTAA 128990 28 100.0 33 ............................ TCAAAGCAGAAATTGGCGATGTCGTAGAAGTGT 129051 28 100.0 33 ............................ TATCATAAATGACAGGAATCTAGGAACGGTCCA 129112 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 134 28 100.0 33 CTTTTACCCGCACCTGCGGGGGTGATCC # Left flank : CTGAAAATGGATAAAATAATTGAAATTGGTGCTGTGAAAGTTAATGGGGATAAGGTATCGGAGTTTCAGATACTTATAAAAATTGATAAAACTTTGCCTGCGTCTATTATAAATCTGACAGGTATAACTGATAGACTTCTATTAGAAAATGGTCAAGAAGCAAAGACTGCTATTGAAGAGTTTATGAACTTTGTAAAGGATAGCTCTTTGGTTGGCTATAACGTTGATTTTGATAGAAATTTTATTCAGAATATGGCTAAGGAAGTAGGTATCTCTCCGTTTGAAAATAAATTTATAGATTTGATGAGATTTGTCAAAAAAGAAAAAATGTTTTTAGTAAATTATAAATTACAAACAGTTTTAAAAGCTTATGGTATATTAGATTTAGTACCACATAGAGCTTTGGAAGATTCGAAATTAACGGCTGAGTTAGCTACAAAAGTGAATGGATTTTTAGAAAGCATATCAAACTAATGCTGAAATACTTGGGATTTTTAAGT # Right flank : CTAACACGATGTCAAGCTATGATACTACAGTATACTTTTACCCGCACCTGCGGGGGTGANTTTGAACAGTTGTAGTAACAGCAGTCCAAACTTTTACCCGCACCTGCGGGGGTGATCCTAACACGATGTCAAGCTATGATACTACAGTATACTTTTACCCGCACCTGCGGGGGTGATCCTGTAGTCATCGGAAATATATACGAAAATCCGGACTTTTACCCGCACCTGCGGGGGTGATCCCACTTTGAACAGTTGTAGTAACAGCAGTCCAAACTTTTACCCGCACCTGCGGGGGTGATCCTGCTAACAAAGCAACCTTAAAAAACTATTTTTGCTTTTACCCGCACCTGCGGGGGTGATCCTGATCCAGCCTGTATGCCGTGAGTGGGAAGTAACTTTTACCCGCACCTGCGGGGGTGATCCTTCTAAACACTCTCCTGTTTCTCTGTTCACAGGCTTTTACCCGCACCTGCGGGGGTGATCCTATCCTCTAGTCATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTACCCGCACCTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129229-135667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXJW01000002.1 Lactococcus piscium strain DSM 6634 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 129229 28 100.0 33 ............................ TAACACGATGTCAAGCTATGATACTACAGTATA 129290 28 100.0 33 ............................ TGTAGTCATCGGAAATATATACGAAAATCCGGA 129351 28 100.0 33 ............................ CACTTTGAACAGTTGTAGTAACAGCAGTCCAAA 129412 28 100.0 33 ............................ TGCTAACAAAGCAACCTTAAAAAACTATTTTTG 129473 28 100.0 33 ............................ TGATCCAGCCTGTATGCCGTGAGTGGGAAGTAA 129534 28 100.0 33 ............................ TTCTAAACACTCTCCTGTTTCTCTGTTCACAGG 129595 28 100.0 33 ............................ TATCCTCTAGTCATATATCGCGCATAACTCACA 129656 28 100.0 33 ............................ TGGGTGTACGCATCAGCTTTTGTAAATTTTGAA 129717 28 100.0 33 ............................ TTCTAAACACTCTCCTGTTTCTCTGTTCACAGG 129778 28 100.0 33 ............................ TGACCTCACACGGCTTTTTATCGCTGTATGGTA 129839 28 100.0 33 ............................ TGGGTGTACGCATCAGCTTTTGTAAATTTTGAA 129900 28 100.0 33 ............................ CAAACTCAAATTTTTAGCATCTACTTTATCTTG 129961 28 100.0 33 ............................ TATGGCGAGTTTAAAGTATGGCAAGCACACTAT 130022 28 100.0 33 ............................ CAACATCACAAGATAAGGTCTTGTCTTATCTGC 130083 28 100.0 33 ............................ TGTAAGCCTCTATTTTTTTAGCGCTTTCTTGAC 130144 28 100.0 33 ............................ TCCTTGTCGATATGACTTGTCTCGACCAGGTTC 130205 28 100.0 33 ............................ TATGTAAGTGAAATTTTCTTGAAATTGCATAAG 130266 28 100.0 33 ............................ TGAAATATAAATTAAAAGGACATTACTATAAAA 130327 28 100.0 33 ............................ CAGCTGAACTAGTATACTTATAACCTGTTTGCC 130388 28 100.0 33 ............................ TTACCAATATCGTCACAAGCGATAATGTCAGGC 130449 28 100.0 33 ............................ CCATTAGATCCAATCATCATCGGAAGCGGTGTT 130510 28 100.0 33 ............................ TGGTTATTGTGATTTAATTCTATCAATAACTGA 130571 28 100.0 33 ............................ TATAAACATTCAAAAAATTATATTTTGAACGCT 130632 28 100.0 33 ............................ TGTATGATGCGGATATACTGAATCAATACGGAA 130693 28 100.0 33 ............................ TTCATCTGATGTAGAAAAAGTGGTGAAAATGAA 130754 28 100.0 33 ............................ TATTCTTGTTGATGTGTTATAGTTTTTTTACCA 130815 28 100.0 33 ............................ CTACATAGTCGCCAACCTCAAATTTAGACTTGC 130876 28 100.0 33 ............................ TATTTCCAATCACTGCTGGGTGGCTATCTAATC 130937 28 100.0 33 ............................ TGATTTACCAGCCTTAGACGGTCCAGCGATTAG 130998 28 100.0 33 ............................ TGATAAATGCGCGACCATCATCCCAAACAATAC 131059 28 100.0 33 ............................ TCTTTAACTGCTACCTCTGCTGGCATAAATCCA 131120 28 100.0 33 ............................ TGAGTAACCATAATTAGCATCGCAGAATGCTTT 131181 28 100.0 33 ............................ TGAGTTCACGGCTTATGGCACGTTCAAAGTTGA 131242 28 100.0 33 ............................ CGAATACAGCAGTGGTCATAGCGTCATTACCTG 131303 28 100.0 33 ............................ TCGGCATCTTCATCACCTCTCATTAGTTCTAAA 131364 28 100.0 33 ............................ TAAACGATAACGCTGGTCAAAGTTTAGACTGGT 131425 28 100.0 33 ............................ TTTCTTGTAATTTAACCCCATCAGTTCATTGTC 131486 28 100.0 33 ............................ TGCTGAACCTCGAATACCACCAGATTTTACAAT 131547 28 100.0 33 ............................ TTGCAAATTCACCAACCAATCAAGACCCTTTTA 131608 28 100.0 33 ............................ TGGGAACTGGTAAGACTTATACAGCTTTAGGCC 131669 28 100.0 33 ............................ TGAAAATCCATTTGGTAGAGAGGCAAAAGATGA 131730 28 100.0 33 ............................ TGAATTTATCTGAATCGGTAAGCGATGATTTTG 131791 28 100.0 33 ............................ TTCTGATAGCTTCTTGCCACTCTCCGTCTGAAA 131852 28 100.0 34 ............................ TGGGTAAACAACTGATTGGAAACGGTTTTCCCAA 131914 28 100.0 33 ............................ TAAAATGATTATCATATTTATTAGCGTTATGTG 131975 28 100.0 33 ............................ TATCAATATCAAATAAATGATGTTATATCCATG 132036 28 100.0 33 ............................ TGAGTTTGGTAAATTAGTTTGAGATTTTCATTT 132097 28 100.0 33 ............................ CGAAAATAAGTAATTAATGTTTGACAACTAAAC 132158 28 100.0 33 ............................ CAAACAACTTAACTAATATAATAGTTAAATTAA 132219 28 100.0 33 ............................ CTGATTCTTACGTGCCACTTGCATACCTCTCTT 132280 28 100.0 33 ............................ TATGGCGTTCGCTGTGTCTGGAAATTACGAAAT 132341 28 100.0 33 ............................ TTTGAATATATTTTTTCCAACTAGGGTTAAATA 132402 28 100.0 33 ............................ TGAATTTGGTGACTTTCCAACGCTTGGGAATAG 132463 28 100.0 33 ............................ TAACACCTTGAGGGGTGTCGTAGTATATAGCAG 132524 28 100.0 33 ............................ TCCAACTCTAAATCATAAAGATTACTTATTGTA 132585 28 100.0 33 ............................ TAACACCTTGAGGGGTGTCGTAGTATATAGCAG 132646 28 100.0 33 ............................ TCCAACTCTAAATCATAAAGATTACTTATTGTA 132707 28 100.0 33 ............................ CAGGTCATTATTTTTAGCATTACCTTCTAGTTT 132768 28 100.0 34 ............................ CGCTTGGCAATACTTACGATACACTTCGCAAGGA 132830 28 100.0 33 ............................ TTGAATATGGGTCTGGCATTGGTTTAGGACTAA 132891 28 100.0 33 ............................ CGACCTGAAATTAATGTGCTTCAAATTCAAGTC 132952 28 100.0 33 ............................ TTGAATATGGGTCTGGCATTGGTTTAGGACTAA 133013 28 100.0 33 ............................ CGACCTGAAATTAATGTGCTTCAAATTCAAGTC 133074 28 100.0 33 ............................ CTACCAAAATCCCTAACAGATTAAAAAATATTA 133135 28 100.0 34 ............................ TAGAGATTGACACTGATAAAACTGATATTACCCA 133197 28 100.0 33 ............................ TAATGCAATGAAACCTGAGGAATTTATGGAACA 133258 28 100.0 33 ............................ TGGCAAGCTGAATCTAAAAGATTTCAAAATTGT 133319 28 100.0 33 ............................ TCACCTTATTTTCTAGTGATCACGAATATATCG 133380 28 100.0 33 ............................ CACGCCACTCACTGCACTACTTACACTGTTGAA 133441 28 100.0 33 ............................ TCTGCTAATTCTGTAATTTGCAAAATTTTAAGG 133502 28 100.0 33 ............................ TTCGTTCAGCTCTGATTCTGTTTAAGTCAAGTG 133563 28 100.0 33 ............................ TCTCGCAAATCATTAATATTAGCTTTTCGTTTT 133624 28 100.0 33 ............................ TTGAAATTACAAAAGGTTCTAGTCTTAATGAAA 133685 28 100.0 33 ............................ TCCTCTCTTAGTAAATCATCTGCTCTTGGATTC 133746 28 100.0 34 ............................ TATTTCTTATATATGCTTCACTTACGTGTTCATC 133808 28 100.0 33 ............................ TGTTTGAATTGTATGATAAATTATCTATGGTTC 133869 28 100.0 33 ............................ CCTTGTTAAATATATTATTTTAGTTAATGAGGG 133930 28 100.0 33 ............................ TCAATTATTTTTATATTTGCGATGAAAAATGTT 133991 28 100.0 33 ............................ CGGCAGATGCGCATAATAACTTGCAGCCATTTG 134052 28 100.0 33 ............................ TAAAATCATTATTTCACCTTTTTTCTTTTTTTC 134113 28 100.0 33 ............................ TAGCAACCTTTTGTTTACCATTACCTGTTTTAG 134174 28 100.0 33 ............................ TATTTACAGTCTAATCCGGCTATGTATGCGACA 134235 28 100.0 33 ............................ TAAAAAAGACAAACGATGGATTTACGGTACGGA 134296 28 100.0 33 ............................ CTGGATGGGCTAGAGCTATATCGGAAATACTAA 134357 28 100.0 33 ............................ TAACTATCATAAATTGGTCTTATAAAAGAACTG 134418 28 100.0 33 ............................ CAGTGACGCATACAGATAGTAAAGGCAAAAGTT 134479 28 100.0 33 ............................ TTACTTCCCCAAGTTTTGACAACGTCATCGCCA 134540 28 100.0 34 ............................ TAAATTGCCTTGCGGTAGTATATATTCAAAATCT 134602 28 100.0 33 ............................ CTTACGAAGATAATGACGTTTCATTTACCTGCT 134663 28 100.0 33 ............................ CCAAATGCTTTGGTGCTTACATTGATTGGCATA 134724 28 100.0 33 ............................ CCTACGTTGGCCAATATCTACGCCATTACCTTT 134785 28 100.0 33 ............................ CACCACGTCATCAGTATGTACTAAGTTAAAATG 134846 28 100.0 33 ............................ TGCCCAGTGAGTTAAACTCTTTTTCGTACTTAT 134907 28 100.0 33 ............................ CTTACGAAGATAATGACGTTTCATTTACCTGCT 134968 28 100.0 33 ............................ TCTCTTCACGCATCATGGCACGCATCTGTTCCA 135029 28 100.0 33 ............................ CAGTTAGCATGATGTCGAACAACTTATAAGTAA 135090 28 100.0 33 ............................ TATCGTCATTCTTGCGTAAGGAGGAAAAAGATG 135151 28 100.0 33 ............................ TGAAAAATGTAGAATCGCTTATATCAAGTCTTC 135212 28 100.0 33 ............................ CAATCGGGTTGACAGTATCGTCAAATTATTAGA 135273 28 100.0 33 ............................ TATCTCGTCTTTTTAGCAGTTGCAGACGTTAAA 135334 28 100.0 33 ............................ TGGCGAGCTTTATCCATGTAAACCAGATATTTT 135395 28 100.0 33 ............................ TAATGTCCCCTGCAATTCTTGAAGCAAATGGCA 135456 28 100.0 33 ............................ TAGTATTCCTGTTGCTGCGACCACTCCTATTGA 135517 28 100.0 33 ............................ TAATATTACCTAACATTTCTTTTTCTTCGGCAA 135578 28 100.0 33 ............................ CCATTTCGGTTACAAATTCATTATATAACCACT 135639 28 92.9 0 .....................T....T. | A [135660] ========== ====== ====== ====== ============================ ================================== ================== 106 28 99.9 33 CTTTTACCCGCACCTGCGGGGGTGATCC # Left flank : CAAAGTACAAGAAATTCCTTTTACCCGCACCTGCGGGGGTGATCCTAAATACTTGACTAACACGGGAAACCGTGTTATCTTTTACCCGCACCTGCGGGGGTGATCCTGACAGTGATTTTTGCAAAGTTTTTTTTGATTCCTTTTACCCGCACCTGCGGGGGTGATCCTATCATAAATGACAGGAATCTAGGAACGGTCCACTTTTACCCGCACCTGCGGGGGTGATCCTATCTTAAATTCATAATCGCCGATATTATTTAACTTTTACCCGCACCTGCGGGGGTGATCCTCAAAGCAGAAATTGGCGATGTCGTAGAAGTGTCTTTTACCCGCACCTGCGGGGGTGATCCTATCATAAATGACAGGAATCTAGGAACGGTCCACTTTTACCCGCACCTGCGGGGGTGATCCTAACACGATGTCAAGCTATGATACTACAGTATACTTTTACCCGCACCTGCGGGGGTGANTTTGAACAGTTGTAGTAACAGCAGTCCAAA # Right flank : CTGTCAGCATCGTCATATATCGTTACTAAAAAGACTTTTACACTATAGCGTATAAGAGTGATTTTCGAGTCTTCTTGCTTCTGCGTACAAATACATAAGCGACTTGTTAGGAAAGCGCCTATTAGATATTTTTATTAAAATCACCATATTGAACATATTATAGTAGCTGATTTAAGATGAGTGATAGCCCCCACCAAGCCTATCAGTCCTTTTTTATTCCCCAAAATTCTGTTAAACTATAGAAAGTGATGAAAAAATAACGGAGAAAAAATAATTAATGAGTATTTTAACAGTACAAAAACTAAGTCATGGCTTCGGCGATCGTGCGATTTTTGATGATGTCAATTTCCGCTTGCTTAAAGGTGAACATATAGGCTTTGTGGGAGCAAATGGCGAAGGGAAATCGACCTTCATGAATATTATCACGGGTGCTTTACAGCCTGATGAAGGTAAAATCACTTGGTCGACCAAGCATCGTGTGGGCTATATGGATCAGCATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTACCCGCACCTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //