Array 1 409564-410523 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LDAI01000018.1 Streptococcus agalactiae strain SH1287 ctg7180000004410, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    409564	    36	 100.0	    30	....................................	GAAGTATACTACGGTTAGAGATTGGCTCAA	
    409630	    36	 100.0	    30	....................................	GAAACTTCGATTAGTTTGCGTACTCGCTCA	
    409696	    36	 100.0	    30	....................................	ATTAGTCCTGTTGTTATGATGGATGATTAT	
    409762	    36	 100.0	    30	....................................	ACAAACCTCTAATGGATAATATAGAACAAA	
    409828	    36	 100.0	    30	....................................	ACACAATTAAACATAAAGAAGTGCTTATTT	
    409894	    36	 100.0	    30	....................................	TCAGGAGATTGTGTGTACTCACGAATTTTT	
    409960	    36	 100.0	    30	....................................	AAATTGTTTTTGTTGTAATATAAAGTCGAC	
    410026	    36	 100.0	    30	....................................	AACCTTGATAGGCGTACTGTATGGATTCCA	
    410092	    36	 100.0	    30	....................................	CTACTGTATTATCTGAAATAGTATCGTTTT	
    410158	    36	 100.0	    30	....................................	TCTCGGGAAATGCAACTGATGCTGCAATCA	
    410224	    36	 100.0	    30	....................................	AAATTGTTTTTGTTGTAATATAAAGTCGAC	
    410290	    36	 100.0	    30	....................................	GCTAGCATGGCACAAAAATAGCGTTGGAAT	
    410356	    36	 100.0	    30	....................................	TTAATAACTGTCCGTTTTGCCATTTCTTGC	
    410422	    36	 100.0	    30	....................................	AGAGGGGAAAATATCAATGCCGAATGCTGA	
    410488	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        15	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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