Array 1 58303-57785 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXE01000019.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4221 NODE_19_length_81881_cov_57.027399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58302 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 58241 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 58180 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 58119 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 58058 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 57997 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 57936 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 57875 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 57814 29 93.1 0 ............TC............... | A [57787] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76170-74617 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXE01000019.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4221 NODE_19_length_81881_cov_57.027399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76169 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 76108 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 76047 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 75986 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 75925 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 75864 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 75803 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 75742 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 75681 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 75620 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 75559 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 75498 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 75437 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 75376 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 75315 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 75254 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 75193 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 75132 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 75071 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 75010 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 74949 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 74888 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 74827 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 74766 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 74705 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 74644 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //