Array 1 474172-472069 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJZF01000003.1 Trinickia caryophylli strain DSM 50341 000001F_arrow, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 474171 29 100.0 32 ............................. CGCGTCGCAGGGACGTGTTTCTGCAAGGTCGA 474110 29 100.0 32 ............................. GCGGCATGAGCGATACCAGCGAAATTCAGATT 474049 29 100.0 32 ............................. TCGAGGACACCCGTGAATTCGTGCTCGTGGGC 473988 29 100.0 32 ............................. CTGACGTCCAGATGAATTTCATGACGCCCGTA 473927 29 100.0 32 ............................. CGGGATCACAGTAACGGGTAACGCAACGATCA 473866 29 100.0 32 ............................. AGGTGGCGAACGTCATAGAATCAACTGGCTCA 473805 29 100.0 32 ............................. ATGTGATCTTCCAGATGCTGGACGAGTGCACT 473744 29 100.0 32 ............................. TTGAGGGCTGGACGCCGGAGCATGATGACAGG 473683 29 100.0 32 ............................. CATGATCGCGGGCGTGACGCTCGTGGCGAGGA 473622 29 100.0 32 ............................. CCCTCGAATCGCAGCTAGCGGCGCGAGAGAGC 473561 29 100.0 32 ............................. CTCTGGAACAACGGCGGCACTCTCTCGGTTTC 473500 29 100.0 32 ............................. CGCTGATCGTTGGCAAGGACGGAATCAAATCG 473439 29 100.0 32 ............................. GCGGTGATTATGGGGTGCTGTTCTACGCGCAT 473378 29 100.0 32 ............................. CACGACGAACATCATGACGCCGAGCACCGTAA 473317 29 100.0 32 ............................. CCGGCCCAATTGGTGACGGGCAGACGCGGGAT 473256 29 100.0 32 ............................. CCTTTGAGTATCCATAGGGGGGCTGCGTGACC 473195 29 100.0 32 ............................. GATTGCCGCGCATTCCGCTCGGTCGCGGGCAC 473134 29 100.0 32 ............................. ACGACGAGCTGGGGTAGCGGCGTCGAGCAGAT 473073 29 100.0 32 ............................. CGCTCGTAGCCGCCGCTCGCGTTTCGCTTGAG 473012 29 100.0 32 ............................. TGCGTCATAAAGGAATGCAGCGGGAACGCGAT 472951 29 100.0 32 ............................. CCAGTCGGCCGCGGCTCCCCCGTCGGAGACAA 472890 29 100.0 32 ............................. CGTATGAGCGCAGTCGAAGAACGGCAAGACGC 472829 29 100.0 32 ............................. GCCGGCGTCAGTAACTTCTACCTAAATGGGGC 472768 29 100.0 32 ............................. CCCGCTTAAGCAGCTTCTCCCGGACTACAAGG 472707 29 100.0 32 ............................. GTGTACTCGGTGAGCTACGAGTCGGCCCTGCG 472646 29 100.0 32 ............................. ACGGCGGGCGTCTCCACGCGCAAGGTCTGGAA 472585 29 100.0 32 ............................. CAAGCCTACGAGACGTTCAAGGCGCTGTCGCA 472524 29 100.0 32 ............................. GTTCGATAGAGTAATACGCGACCCACTCGCCG 472463 29 100.0 32 ............................. ATCAATTCGGTGCGATGGCGGGCGACGACAAG 472402 29 100.0 32 ............................. AGCATGATAGGGCTCGGCGTGAGCCACGCCAG 472341 29 100.0 32 ............................. GATCAGCCGTGGCGTTGTTTGCTGCGGTCGTG 472280 29 100.0 32 ............................. CACCTCGTCGATGCCGCCCAAGGCAAGCATCC 472219 29 100.0 32 ............................. GCAATCATCAGCGGCGGCCTGACGCTCAGCGC 472158 29 96.6 32 ......................C...... CCTATGACGAGGGGATGGCCGAGCTCGAACGG 472097 29 93.1 0 ..............T...........T.. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGAGCGCGGGGATGAACCG # Left flank : TTCCGGACATCGAAACGTTGCTTGACGCCGGTGAGCTAGCCAAGCCAGAAGCGCAGGGCGTGGTGGACGCGGCATTCCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCGAGGCTGCGAGGGCGGATGGCGATCTGGCTGCTAGAGGTTCGTGCCGGCGTTTACGTAGGCAACTACAACCGCAAAGTCCGAGAATATCTATGGCAACAAGTGGAAGAGGGGTTGGATGATGGCAACGCGGTGATGGCTTGGCAGGCTGCTAATGAAGCAGGTTTTGATTTTGTCACGCTGGGGACCAACCGCCGCATGCCAGCCGAGTTTGACGGTGCCAAGCTGGTGTCTTTCCTTCCGCCTTTGCAAATCGGTGATGTAGGCGAATAACGCCGTTCACGGCGTGATGGGACCGGGTTCGTTCTTTAAAAATTGGTAAGTTTCGGAGTGTCGTTTTTGTTCTGTAAAATCAGTTGGTTACAGTTGGT # Right flank : ACTCCCATTTACCGTCGGCGCAGGCCTTCAAGGCTGCTTTGCCGGGCGGTTACACGCGAGCTTGACGGCAGCCTCGTTAGTCGGGGGGCGACTGCTCTAGCCTTGCGGTGGCAGGCCTCTTCGTTGTGCGAGGCGCATTGGAGTCTCATTGCGCCAAGCAAGATCAGAAATCACTGACACATACGCGGTGCCATTGGCGTTTGCGTTCTATGTTGCTCGGTCATCTGGCATTTCTCACCGCTACGCACGGAGTTGCAACTGACAGACACCGGTACGTGCCAGGGCATCGAGATGTCCGCAGGACAGTTCTGGCTACTCGCGGAGCATCCTAGCCGGCTCATTGGAGCTGTGCCTTCAAAACGCGGCGGCGGTGACGGCCGGCAGTGACGCCGGCCGATTTACGTAAGCTCTCAGCTCCAATCGTCCATGTCGTGCTTGATCGTATGGCGGTTCGCGATCAGCGTTTCGACGCTCGGCTCGTTGTTCATGGCGCGCTGGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //