Array 1 142519-141493 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYS01000002.1 Bartonella apis strain PEB0150 NODE_2_len_500760_cov_137_81_ID_3.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 142518 36 94.4 30 ....C..............................T GGCGGGTTGAAACATTTTTGATAAAGAAAG 142452 36 100.0 30 .................................... ATTGCACAGTTTTGACGGATAAGACGAATG 142386 36 100.0 29 .................................... AAGTGCGTGTAAAATACTTGTAAGGAACA 142321 36 100.0 30 .................................... CACCTTCGCCGGCAATCAATGTGGAATTCG 142255 36 97.2 30 ....C............................... AAAAAGCTATGAGCACCGGTTGCATCTGGT 142189 36 97.2 30 ....C............................... TTTCATTATTAATTACGAAGCGGCATGAGT 142123 36 97.2 30 ....C............................... CAAACAGCAGATAAAAAGGAAGGTGAATAA 142057 36 91.7 30 ................T.....C......A...... TTTTTACAAACACTTATCGGGGATGAAGCT 141991 36 83.3 31 ....C....................C...A..G.CT GTAACCTATAAACTAGTGATTGACACTTTTG 141924 36 80.6 29 ....C................T.........GTGTT CAGGCTGCAATATTGGCTTTCTTGACCAT 141859 36 77.8 30 ....CA..C...T........A..GG...A...... GAGCAAAGCGCGAGCAAAAGCAAAACGAAC C [141858] 141792 36 100.0 30 .................................... CCATATTATCATGCAGATACCGATTAAGAG 141726 36 100.0 30 .................................... ATATTTGAGTTTTTATCCAAAAATATATCA 141660 36 97.2 30 ....C............................... CCTGATCTAGAACCAGAATTGCCGGCATCT 141594 36 94.4 30 ....C..............................A AAACTCGTGTCATTCATCTTCTCCTGTAGT 141528 36 83.3 0 ....C.....A..................A.G..TT | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 93.4 30 GTTGTGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TGTTTCTAAACTGATGTTCGATTTTCCGCATTCAACCTTAGAAAGGAAAGCCTGTTCAATGCCCGTAACTCGTTGGATGTCTTTTTGCGTCATACCAAGCACTTTACGTGCGGCGCGAAGATTTTTCCCGAAAATCGTTTTTTCGTCGTCCATTGTTCCATTCCTTTCTCTTCCGCTATATTCGCGATACACATGTTTTGCTTTTTTCCCATAAAAAAGCAATTAAATATGTCATAATAAACATATTAACCGAATTAACCAAGAAAGGAAATATGACAAAGGAAAGAAAAACCCTCGAAAGCAGCGAAACTTTGAGGGTCTTCATAAAAAACCAATAGTAAAAAGCTAAGGCGATCAACTTAAAATCGCTTTAGCGTCTATCTTGTTCTGCCGCAAGAAGTTTTTTGCGGAACGGGTTTTTTTGCGCTTTTTTTAGTCTGAAAAAGACAAATGTTCAACCAAATAGCGATTGTTTCCCAAAAATGGAATGCGTCCGTGTT # Right flank : CAGAATATCGGTTTTACCGGCAAAAATTGCAGCATGATTGTATTTTTAGCCCCATTGCGCTTTAATGGCGCCAATGAACTTTTAAAAGGAATATGCCAAAAATGGCATATTCCGGTTCATAACCAGCGCTCCTATGACCTTGCCTGTTTGGACACTCTGTCCTGCGCACCGGGGTCGAAAACGCGCCCCATTTCATCCACACGAATTTGCCGGAATTGCATTTTTTTCAACCCCGTTGCTGTTTTAACAGTCAATTTAAAGGGGTCGTTTTTGTTGGAATCCCTCGCAGATACATCCGCTTCATTATGGGGAGCAAAAAATATCTGACCGTTTTGACCGAATTTGACAATGCGGGCAATCACACGCCCTTTTTCCGGATCATTATAAGCCACCATATCATTTTGTTGCAGGCTCAACACTTTGCGCGCTGTGGGGTTATTTTTATGAAATTGCGAACTCCATTTTGGTTGGTGCGCATCAAACATTGAAACAACTTCGCT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : GTTGTGGCTTGACCGCATTTTCTAATCTGTTACAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 144779-144279 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYS01000002.1 Bartonella apis strain PEB0150 NODE_2_len_500760_cov_137_81_ID_3.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 144778 36 86.1 30 A.G.............T.....C......A...... TTTTTACAAACACTTGTCGGGGATGAAGCT T,C [144771,144773] 144710 36 100.0 30 .................................... TTGTTATAGATCCACACGGCCGCAGCCCCA 144644 36 100.0 30 .................................... TTCGCCTTCAATCTTCACATCGACTTGTCC 144578 36 97.2 30 ....T............................... CTTTTCTCCGCGCACTTGTGAGAACAATTG 144512 36 100.0 30 .................................... TACCGGTAAAGATAAGTCAATTGTATATTA 144446 36 100.0 30 .................................... AATGACATATAAACACACATTAATCGTTGA 144380 36 100.0 30 .................................... TTATCGCAGCGATTAGCGAGCTTTCAGTCA 144314 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.9 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GACACACTACGCCTTTAGCTGATTTATGCAGAAGTTTTCTTCACTTGTCAATCGACCAGCTTTAAAAACCGGAAAGCTTTTTGTGAATTAACCGGCAATCATGGCGAAAAACCGGATGCATTTGACAAGCAAACATCAAGCAAACATTTTTTGTCGGGCAAACAGCAATGAACCGGAAAACTTTGTTGCGTTTTAAAAAATCGTGCCCGTGGCCCCGCGCAAAAATGAACAAAACAGATTTGAAATGGTGAACGGAATTTTCCAAAAATTAAAAAAAGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATATTTGTTTAACAAATAAAGTTCGCCTTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTCCTTTTCTTTGAAACGACTTCTTTAGTTATGCGCTCGTTCAAA # Right flank : CGATGTCCACTTAACCATTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGCCTTCAACATTTTCTCTAAAAAACCAACCATTTTCAAATGGCTTGCCAATTCAGAAAGGTGGTCAATCGCTCACTGCTTGGAACACCTCCTGCAATTAGCATTTGCTAACAACGACCAACCTATAATCAGTCCTTATCGTCTCTGTTGTTCCGGAAATCACTCACATACCCCATAAAATCGGGAGATTGATAATGGTGAGCGAGCATCAAGGCAAAAAACGGATAACCGGCATTCGATAGAGAAGAAAACTACCGCAAGCCACGACAACTCACGAAGTATAAAACAAACAAATCCCGATAAAAACCAGCAAAAGAAATATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCGATCCCCACATGGCTAAAAGCCATGGCGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 3 148210-147579 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYS01000002.1 Bartonella apis strain PEB0150 NODE_2_len_500760_cov_137_81_ID_3.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 148209 36 100.0 31 .................................... CAATAACGGCAAGTCCCATTCTGAATGAGGA 148142 36 100.0 30 .................................... ACTCACCTCAACCATTCGCTTGTTTTTTGG 148076 36 100.0 30 .................................... TTCTTAAAGGTTCGCCCTTCACCTTCTGCA 148010 36 100.0 30 .................................... ATGGTCGTACCGGCCTGTTAAAAGAGTGCC 147944 36 100.0 30 .................................... ACTCACCTCAACCATTCGCTTGTTTTTTGG 147878 36 100.0 30 .................................... TTCTTAAAGGTTCGCCCTTCACCTTCTGCA 147812 36 100.0 30 .................................... AGTAGCTCCTCCGCCAACAGTTGTGATTGT 147746 36 100.0 30 .................................... ACAAGCTGAACAGCAGCAAATGCCGGTGGA 147680 36 100.0 30 .................................... GCTCGCTTAAAGCTTGTTTATTTGAAGCTA 147614 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CGTGCCTTCAACATTTTCTCTAAAAAACCAACCATTTTCAAATGGCTTGTCAATTCAGAAAGGTGGTTAGTCTCTCACCGCTTGAAACACCTCCTGTAATTGGCATTTGGTAACAACTAATAACCTATAATCAGTCCTTATCATCTCTGCTGTTCCAGAAGTCACTCACATGCCCCATGAAATCGGGAGATTGACGATGATGAGCGAGTATCATTGCAAAAAACGGATAACCGTCATTCGATAGAGAAGAAACCTGCTGCAAGCCATGACAATTCACGAAGTATAAAACAAACAAATCGCGATCAAAAACAGCAAAAGAACTATATCACAGAAAGGGAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTACTCGGCGCATCTTAAATATAACAAAATGAGAAGAACAAATCAACGAATAACATAATAAAGTAAGTAAAGATTGAGTATAGGGACGTTTTACCAGCGTTCT # Right flank : TGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTCCCATTAAAATAACACCGGTAATTTTCGATTTTTTTGACGTGTCGTCCACGTTTTACCTGAAAATCTAATCATATTTTCACATAAGCGCACGATCAATTTGCTTGTCCCGTAAGGCAAAAAAAATATCGAAATTTCATCGTTCGGGCAAGGTAGAACTGGGCTTACCAATACAGGATAAACCGGCATGGTCGGGCTTTTTTTAGAAAGACCTCAAGCAATTTAGTGAACCGCTGTTTCGATTTTTTAGGAAAGCTTTCCGTTGTTAAAATGCTGGTGAACGCGCCGTGCTACCTAACAAGCAGCCCGCTTTGATAAAGCAGACTTTAAGACAGCATGATAAACCTTAAGACAGCGACTTAAACCGGTTTGTCGCATCCGGTTTGCTTTTGTCAATTTTTAAACGTGGCTAAAACCGAACGAGCCTGGCCCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 4 149512-148815 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYS01000002.1 Bartonella apis strain PEB0150 NODE_2_len_500760_cov_137_81_ID_3.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 149511 36 88.9 30 ACA..C.............................. AACATCGTTTTTTGATAGTTTTTTACTGGT 149445 36 97.2 30 ..............T..................... TCTTCGAGGCGTTCCGCACGCGTCCGGAAA 149379 36 100.0 30 .................................... TTTGGCTGTTAGTGATGCGGCGTCGATTGA 149313 36 97.2 30 ....................C............... GCCTCACAATATATATAGGCGACTGCATGG 149247 36 100.0 30 .................................... TCGGCAAAGACAAAAAACAAATGACATTCT 149181 36 100.0 30 .................................... GTTGGAAGAGGAAATCGATGCTGGTCGTAT 149115 36 100.0 31 .................................... TAGTACTGCCAACTATTCCCCTACCCTTACA 149048 36 100.0 30 .................................... TTGCGGTGGCTGCAACGATGACAACATGGG 148982 36 100.0 30 .................................... TATCAGAAAGCTTGTAAAAACCCCATTTTA 148916 36 100.0 30 .................................... GCTGGCTAATAGCTGCCTAGCCTCGCTTGC 148850 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.5 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGTGCCAAGGAAATTTACGCCCGTTTCGGCTTTCGGAAGGTGTTGATGGCAGGATCTCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCCTGTTTTACCCCACCACACCCTATTTGTTGATGATTATCGTGCTCTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAGGAAGACATTAGTCAGGCAACGCCGATTGCCGCCGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCCGGCGCGGTTCTGGAAATTGCCAGCTCCTTTCACAACAATATATTGAAACTTGAAGATTTTCATACGGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTACCCCGCGATGCAGGCCATGCTTTGAACGAAAAGAGCAAACAATCCGCGGCACAACACTGATGAAACCAAAACATATTCT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGCCTTCAACATTTTCTCTAAAAAACCAACCATTTTCAAATGGCTTGTCAATTCAGAAAGGTGGTTAGTCTCTCACCGCTTGAAACACCTCCTGTAATTGGCATTTGGTAACAACTAATAACCTATAATCAGTCCTTATCATCTCTGCTGTTCCAGAAGTCACTCACATGCCCCATGAAATCGGGAGATTGACGATGATGAGCGAGTATCATTGCAAAAAACGGATAACCGTCATTCGATAGAGAAGAAACCTGCTGCAAGCCATGACAATTCACGAAGTATAAAACAAACAAATCGCGATCAAAAACAGCAAAAGAACTATATCACAGAAAGGGAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //