Array 1 1474048-1472334 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFML01000001.1 Amycolatopsis cihanbeyliensis strain DSM 45679 Ga0197559_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1474047 37 100.0 34 ..................................... CTGATCACGTGCACGGGACCACCAACGGCTACGG 1473976 37 100.0 34 ..................................... TTCTTGAGCAACTGCTGAGACTTCAAGGCGATCG 1473905 37 100.0 36 ..................................... GGCGAGCGCACCCGCAGCGGTGGTGTTGTTGGTGTA 1473832 37 100.0 37 ..................................... CACGTCGGGAAGAGCGCGCCACCGCCGGACTCCAGTT 1473758 37 100.0 35 ..................................... GCCTCGTGGCGGATCATCTTCAGGTAGGACTTGGC 1473686 37 100.0 37 ..................................... CACGTCGGGAAGAGCGCGCCACCGCCGGACTCCAGTT 1473612 37 100.0 36 ..................................... CTCATCGCCCTCTCCCGCTTCCGCTGGGAGTCCTCG 1473539 37 100.0 35 ..................................... CACCGGGTCCGTAACCGGTCGAACTCGATGTCGTC 1473467 37 100.0 39 ..................................... TGCAACCAGGATCACCAGCAGGCGTGGCAGGCCCGGCAA 1473391 37 100.0 35 ..................................... GGCGAGCTCGGGCTCAACCAAACAGGCGGTGATCA 1473319 37 97.3 36 ........C............................ GACAACAACCCGAGCGAGCCCTACGCGGCCGCCGAG 1473246 37 100.0 38 ..................................... CGTCGAGCCGGAGCACGGCTTCATCCGCACCCGTCCGG 1473171 37 100.0 36 ..................................... CTTTCTGGGTTGGGTGGGGATTCACGCGGCGGCCGG 1473098 37 100.0 37 ..................................... GACATTCCTCAACCCTCGATTCGTCGAGGGGAGCTGA 1473024 37 100.0 34 ..................................... TCGTCCAGTGCCATGTCGTCCTCCTGTCCCGGGG 1472953 37 100.0 36 ..................................... ACCAGTACCGCCTCATCTCGCGGTTCAGGTCTTGCA 1472880 37 100.0 36 ..................................... ACCAGTACCGCCTCATCTCGCGGTTCAGGTCTTGCA 1472807 37 100.0 36 ..................................... TCGACCGTCTCAGTCACGTCGATGTGCGGGACCTTG 1472734 37 100.0 36 ..................................... AGCGACGAGCGCTTTCCACGCCGACACCCTCCACGA 1472661 37 100.0 36 ..................................... CGCCCGTTGCCCAACCGAAGGAGAGCCATGCGTAAG 1472588 37 91.9 36 ..............T..G..T................ TCCAAGAAGGTGCAGGTGCTCGCCCGCGAGATGAGG 1472515 37 86.5 36 .......T.......GTG..T................ GTCGCCTACACCGAGACGACCCCGGCCTGATGACGG 1472442 37 89.2 35 .......T.......G.G..T................ CTGCAGTCGGTCGAGGGGCAGGTGGCACTGCGCGC 1472370 37 91.9 0 .......T.......G.G................... | ========== ====== ====== ====== ===================================== ======================================= ================== 24 37 98.2 36 GCAGCGCCGGCCCTCCCAGGCCAGCGAGGATCGCAAC # Left flank : GACACCACGACACCACAAGGACAACGACGGCTTCGACGCGTAGCCAAGACCTGCGAAGGCATCGGCCACCGCGTACAGAAGTCCGTCTTCGAGATCGTCTGCAGCCCCGCACAGAAACTCACCCTCGAAGCACGCCTACGAGACATCATTGACCCCGACCGCGACTCCATCCGGATATACCACCTAGACCGAGGAACCCTCAGCACCGCACAACACCTCGGCGCCGCAATCAACGCCGCCCACCACGACCCACTTGTAATCTGACTACTCAAGAACCACGACATCCGTTCCAACCAACACGAACCATCGGCCGACACTGATACGCAAAGTGAACCGTCACGACCCCGTCAGCAATACGAACCCACAACGCTCCCTTCGGAACCCCAGGTGTCAAACGACACGCCGGCACGTTCCGAACCACCCTCAGGCATGTCATCCCAAAATGTGGAATCCGCGATACCGTCAAGGCCACTCAATGGGTGCGACCCAGCTCACGCAGG # Right flank : GCCCGGATCTGCGTTCACGGTCAGGCTGGCTGTGTCGGCAGTGCTGGTCCGTCCGGGTCAGGTGCCTTGCCCACCGAGCAGGGGCGGCTGGCACGTCGGCCGCCGGTCCGAAATTGCCCGCCTCCTCGACATGAGGACTTCCTCGTCCCCTCGCCGGAGATCAAGACGGTCGGGCGCGGTGCGTTGGCCAGCGGCCAGGTGCCCATGGAGGTCGACGAGGACATGATCACCGCCGCGCTGCATGTGGAAGGCTGAAGCGAAACACCACCCGAGAAATACCTGGCCTCAGGCCGAGACCGTCTCCTTGGTGCTCATGTCGGGCCCACTCTGCGTGGACGAGGCCAACGGCGGCACGCGAGCCTCAGCTTCCGGGCTGCCCAGCTGAGCCTTTCCTCAAGCGTGGTCAACCTTGCTGTGGCGAGGAGTTGATCTATGTGGAGTCGCCCACAGTGCTAGCGAGAACGCAAACCGCTAGTCGTCTGTTGTTGAGATCTGTCGAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGGCCCTCCCAGGCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1484655-1482799 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFML01000001.1 Amycolatopsis cihanbeyliensis strain DSM 45679 Ga0197559_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1484654 37 100.0 35 ..................................... TGCAACATCGGCATAGTAGGCGCACATCAGGTGTC 1484582 37 100.0 37 ..................................... TTCGTTCGGCGACAGCCTGGTGCCGCTGACCATCGCG 1484508 37 100.0 36 ..................................... GACTCGCTGGGGCGCATTCTGGTGATCCTCGCGCCA 1484435 37 100.0 34 ..................................... ACCAGCGGGGGCGGCGGGGCCGCCCCGGGAACGG 1484364 37 100.0 35 ..................................... TATCGCATCCTTGCGGATCATCTGGCGTACAACCC 1484292 37 100.0 35 ..................................... CCTGGCGACAGGTCCGGGTCCAGCACGAGCTGACC 1484220 37 100.0 35 ..................................... CAGGGCCTCGATGATGCGGTCCACGTCGGCCCGCT 1484148 37 100.0 36 ..................................... GTCTCGACTGCCGGCTTGTCGGTAGATCGCCTCCGG 1484075 37 100.0 35 ..................................... GGCCTCGATCGCGTCCAGATCCACGTGCGCGGACC 1484003 37 100.0 35 ..................................... GGGTTGGTGCGGTAGTCCCCGGTGGTGTCCTCCCG 1483931 37 100.0 36 ..................................... GCCAGCGTCCACGATGTCCCACCGGTCCACGATCAG 1483858 37 100.0 35 ..................................... CTCGGCTTTCGATCCGTGCTTCGCCATGCGCTCAT 1483786 37 100.0 36 ..................................... TGGTGCATGGGGTGATCAGTCCGGAGGAACCCCACG 1483713 37 100.0 37 ..................................... CTGCAACTGGGCCAGCGCTTCGGCGATGGCGAGGCCA 1483639 37 100.0 37 ..................................... CATCTGGTGACCAGGAGAACTCCAGCGTTCCATCGGA 1483565 37 100.0 35 ..................................... GACTACGCGCTGGCCCACGGCGACGGCAGCGCCGA 1483493 37 100.0 34 ..................................... TGTCGGCGGATGTGGTGCGGGATGAGCACGGCGA 1483422 37 100.0 37 ..................................... TGGTGCATGGGGTGATCAGTCCGGAGGAACCCCACGG 1483348 37 100.0 36 ..................................... GCCCGGCCCGCGGCGACACGTTGCGCCCCCGATAGG 1483275 37 100.0 35 ..................................... CTCGTCCAAGGCGCGCATCGCCCTGGCCGGGCCGT 1483203 37 100.0 36 ..................................... GCCCGGCCCGCGGCGACACGTTGCGCCCCCGATAGG 1483130 37 100.0 36 ..................................... GCCCGGCCCGCGGCGACACGTTGCGCCCCCGATAGG 1483057 37 100.0 37 ..................................... CACCAGGACAGCAAAAAGGGGCGCGGCGAGGACGCCC 1482983 37 100.0 36 ..................................... CACAACGGCACCGACGACGATGTGCTCGTGCCTCGT 1482910 37 97.3 38 ........G............................ ACCGAGGTTCGCCCCGGACCGCACGATGATCCACTGGC 1482835 37 75.7 0 .TG.....G..........G..A.T..C....C..T. | ========== ====== ====== ====== ===================================== ====================================== ================== 26 37 99.0 36 GCAGCGCCAGCCCTCCGGGACCGGCGAGGATCGCAAC # Left flank : TGATCGAGCCTATCCGGCTCAGTCGGCGAGCAGGACGCGTTTGCGGAGCACGTCGGGCTTGGCACGACCGAACACCTGGTGTTTCAGCATCGCCACCCGGTTCCCGTGGCCCTCAACGCCCCCGCTGCTCCAGGGCAGAGTGAGCCCGGCGGTGACCGCGTCCTGATCGCTGCGTAGCCCTCGCACGAAGAAGTGAAGTGCGGGCTGGTCGTCGGTAGCGTCCGTATTCTGCGAGTCGGCCATGATCCAGCCGACGACGCGACGGACCGACAGCGGCTGGTGTCGGGGTCGCTGGGAATGCGCGGCGGCGCGAAACTGGCGCAGGTAGTGGCGAACCATACCCTTGGACCGCCGGGACGTCCTCCATGGCGGGTTGGGAACCCCAAGCGTGGTGCGACACACCGGAAGGTTCCCAACTAAACTGTGGCGTGTCATCCCACGATCTGGGCTCGACCGGACGATCCAGGTCATCAGTAGGATGTCGTCCCTGCTGATGTGGG # Right flank : CTAGCCAGATCATCCATGTCGTGAAACATGTACGGGGTAACGCCCCCGCGTTCCCGGCGGGCACTGAAGGAGGCCACAGGGCGGAATATCACCACACGGACCCACCACCTGCGGAATAATATGTGCACAGGCGCCGGGAATTGCGTGAGCGTCGACAGGTGTCAAGGCAGGTCGGCATCTGGGTTGATCAGAAACGTTGAGTGTGTGTGCGCAGGTCAGAGGTTTTCGTTCCTCCTCGTTCTGGAGGGGTACCGAAGGCCCCGCGGCTCGAGTGGCCCGTCTCGACAGTGGGTGTAGCCCTGCCAGGCTGATGTGGCGTGCCCGAAGGACGACGGGTGAACGGATTGGGTCTGTGGCCGCTTCACCGCTGGTCGTCATCGGGGGCCGTTTCCGCACGTTTCCGGGCTCGTCGGCGAAGCCAGGCCAGCACCGCGGTGCCCAAAGCACTACACGCGCCGCCGATCCACGCAACTGGCACGCCGAACACCGAGCCACTCCCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCAGCCCTCCGGGACCGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 2502835-2502619 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFML01000001.1 Amycolatopsis cihanbeyliensis strain DSM 45679 Ga0197559_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 2502834 30 96.7 32 .............................A TTTCAGCGTTGATGCACAGCACTATATAAGGA 2502772 30 93.3 31 ............................GC ACATGGGCAAGAACAGCAAGGACAGCGAGGA 2502711 30 100.0 31 .............................. TGGTCAGGTTGTCCGACCGACCCTCGGAGTC 2502650 30 86.7 0 ..............T......T.....TG. | G,A [2502626,2502631] ========== ====== ====== ====== ============================== ================================ ================== 4 30 94.2 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CGGCATGAGCCGTCGAAGCCGTCGTTGCCCGCCGTCGCAGTTTGTGCCGCTGCGGGCGAGCGATGCCGAGATCGCCGGGTGGCCGCGGCTGACGCGGGAGGCCCGCACCTGCTGGCATTGCCAGTCGATCTACCCGACCGCCGAGCACGCCACGCGGTGCGAGCAGTTCCACGAGGCACCGAATGGTGACCGGGCGAATGGGACACGGCGGTGATCCCGCGTCGGGACCGCCCGTTGCTGGTGCTGGTCCTGCTCGCCCTGGCCTTGTCGCTGGTCCAGTCGATCGCCTTCTCGATGGGTTGGTGGTGCGGCTGCTGACCTCTGGACTGCTGCCGGTCCCACTTCCCCTGGTACCGGCGGCATGGGCCCCGGCGCTTCCTTCGCACTCCTTGCGCGCCGGGGCCCACTCGGTGGAGGGCTGGTTCCGTTTCCTCGGCTACACTCGCCACGAAGTGAAGTAGAAACGGTGTTTCGGTCCGCATCGTCGCAGTTCAGGAAGT # Right flank : ACTGCCGTGCCACAAACAGCTCGGCCTGCTTGAGCACTCGAAAGAGCTCGCTGACCACGTCAGCCGTCCCACCACAGTCCCAGCCGTTGATCTCGTCGGCGTCCTACGGCACCTGATCCGCCGGGCGGAAGCTGGTGGTGAGGCGCTCGAAAACCGGTGGAGCAGAGCGGCTGTGTGTCGTTACCTTGCTACCGACCCAAGTCGTCTAGTCAAGGACGTGCCGTTGTACACCCTGTGAGATCTCCCGAGCGCTGATTGTCGCGCGTCGCGTATGCGCACGTGCTCTTTTTGCGGTGAATTTCTCACTGAACAGGTGTACTTTCTGTGTCCGAAAACTGGGTAGTCGAACCCGTATGCCTGCCGCTCGTTCGTCGCCGGTGCCACGTTTGCGCGTCCGAGCGCTTCCGGACAAGCGGTAAGTTTCGCGTCAACGCAAACCACAAGCTCATCGACGTCTGGCTCCTCGCGCTCTGTTCCGCTTGCGGGGAGACCACAAAGCT # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.30,-14.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 6134895-6134318 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFML01000001.1 Amycolatopsis cihanbeyliensis strain DSM 45679 Ga0197559_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6134894 28 100.0 33 ............................ CGCGGCGAGGTTCAACTCACGGGCTCGGTCGAG 6134833 28 100.0 33 ............................ CGGATCCGTGACCGCGGCCGGGGCGGTGTGGTG 6134772 28 100.0 33 ............................ GCTCCTGTCCATCTCGGGCAGCACGGTCGGTGA 6134711 28 100.0 33 ............................ CCCCACACCCACCCGTGGGTGGTCATGGAGGCC 6134650 28 100.0 33 ............................ CGAGCCTGATGCATTCGATGAGGCTCAGGTGCA 6134589 28 100.0 33 ............................ CTTGACGGCCTCGCCCCACGACGGGCCGTCATC 6134528 28 100.0 33 ............................ TACGTCACCGTGACAGAACTAGGTCTGCCCTTC 6134467 28 100.0 33 ............................ GGTCCACCGGCCGCGCTCAGCCTGTTCCCACCA 6134406 28 100.0 33 ............................ GCCCATCAGCGCCGACCCGGCGGACTCGTATGC C [6134388] 6134344 27 89.3 0 ................T....-.....A | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.9 33 GTCTTCCCCGCGCGAGCGGGGATGGTCC # Left flank : GACGGTAAGGAAGTCGCCGGCGGAGTGTCCTACGGGAGCGATGACCTGTGACGGTGATCGTGGTGGCTGCCTGCCCGGTGGGACTGCGTGGCCATCTCACCCGGTGGCTGCTGGAGATCGCGCCCGGCGTGTTCGTCGGCACCATCAACAGCCGGGTACGGAGTCTCGTGTGGCTCCGTGTGGTGGAGATGGTCAAGACCGGCAGGGCGATCATGGTCCACTCGGCGCCGAACGAGCAGGGACTCGCCTTCACCGTGCACGATCACGAGTGGGAACCGGTCGACTTCGAGGGCATCAACCTGATGCTGCGCCCCGCGCCGGTGGACGATCCGGTGCTGAAGAGCGACGCGCCCAGATCGGTCGGCTGGAGCCGGGCCAGCAAGCGGAGACGTTTCGGCCAGCGGTGACTCCCCGCACATGGTCCGGTACAGCGGAGCTGGCCACGCGGAAAAGTAAAGCGAAAACAGTGTTTCGACGGGTATCGCCGCAGGTCAACAAGT # Right flank : TGTGCATGGGCGGCCAACGCAGGCGCGTGAGCGGCAAGCACGGCGGCGAGGTGTGGTCGCCGCCCGCATCCGCGCGCCGGCCATCCACGTGCGCGCTTTGGCTGTTCGGGACGGATCAGGCGGCGAGGGCAAGGATGAACAGGGCGCAGGCGGCCAAGGCGGCGAGGGTGCGGACGTGGTTCCAGGCGGTCCACACCGAGGCGTAGCGGGACCAGTGCTGTGCGCTGCCCTCCGCCTCCGGATCGAGGGTGGCCAGCGCGTTGTTCCTCGGCACGTGGACCACGATGGTCTCCAGCACGGTGCCGATGACGTAGAGCAGGGCACCGGCGAGCAGAAGGCCCGCGCCGGGTTCGGACCACCGCGCGATCGCCGTGATCCCCACCACGACGCACACCACTCCGGTGCCGAGCAGGGCGCCGAGGAAGGCCGGGTTGACCGCCACCACGTTGATCGACTGCATGGCGGCAAGTCCCTGGGCCGGTGGCAGCTTGCCCAGGGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 6147320-6148132 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFML01000001.1 Amycolatopsis cihanbeyliensis strain DSM 45679 Ga0197559_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================== ================== 6147320 29 100.0 32 ............................. GCGGCGACCGCCTGCTGCGGGCACACACCGTT 6147381 29 96.6 32 ............................T GCCCCGTTGGGGTGGTCGGCGAGGTTGGCCAC 6147442 29 96.6 32 ............................G TGGGTGGACCTAACCTAACTGCGTGGTACGAG 6147503 29 100.0 34 ............................. TGGAACACCTCCAGATTCCAGCCGGCGGACATCG 6147566 29 100.0 32 ............................. CAGTGACCCACTCGACCCCCACGGGAGACGAC 6147627 29 96.6 32 ............................G CACCGCGCCGACATCGTGTGGGCTCTGGTGCA 6147688 29 100.0 32 ............................. TCCTGAACTGGATAGCTCTGGACTACGTCGCG 6147749 29 96.6 32 ............................G CACCGCGCCGACATCGTGTGGGCTCTGGTGCA 6147810 29 100.0 32 ............................. TCCTGAACTGGATAGCTCTGGACTACGTCGCG 6147871 29 100.0 32 ............................. AGCGTGGATGTGATCGAGGATCCGGTCAGCCC 6147932 29 96.6 143 ............T................ AGGTCGGTCGCACTGCGCACCAGTGGCCACGGCATCAACGTCGCTGGGCAAGCGGGGTTTGTACGCGTCTTGTACGCGGGGGGTTGATCCTGCCGGGCATGGCGTGTTCACAGTTCCGGCGCATCGCCGGCAGAACGGTGACC 6148104 28 75.9 0 ...T..G....-........CC....G.T | T [6148118] ========== ====== ====== ====== ============================= =============================================================================================================================================== ================== 12 29 96.6 42 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TCGGCGATCGTCACGTCCAGAGCCTCGGCGATGCGCTGGAGACTTCCGATCGAGGCAGTATGCCGCCGTCCTTGCTCGAGCTTGCGGATGAGGTCGACGCTCACCTGCGCTCGGTCGGCGAGTTCCCGCTGCGACATCAGCCTGCCGCGCAGCTGCCGAATACGTTCACCGAGGTCAACATGGTCACCCATGACGGACCTGCCCATCTTTGCGGAGTGCCTCCCCTCGCGTGCCCTTGGCAGCGGACCAGGACTTCCCTTCGCGACGAGGTGCATCACCAGGGTAGCCCCTACCTGACCGGGTGGGCATGGCCGAGTACCCACCTTGTGAGCAGCTCCGCGGCAACACCGTGATCCTGCCGCGTGATCGGCTTCTGCCGATACGGAATGAGAAGTGCTTCTCGCTCACCAGTCGGGTCGCGGGCGGCGAGGCGCTAGACTTGCGCCGCAAGAGTGAAGTAGAAACAGTGTTTCTGTTCAGATCAGCCCAGGTCAATTAGT # Right flank : TGGCGGGGGCCGTTCCGGCGGGAGCGGCCGTCGACGGCACGGTGCGCACCGCGGGCGACCCGCTGAATGTCCGCCGCGCACCCACTACCAGCGCCACGATCGTGGGCACGGTGAACAACGGTACCCAGGTGACCATCGACTGCCAGACGCACGGTACCCGGGTCAGTGGCGAGCTGGGTACCACGACGCTCTGGGACTACGTGCCCTCGCTGGACGGCTACGTCTCGGACGCCTACATGTACACCGGCTCGGACGGGCAGGTCGCGCCGAGCTGCGGGGTGGGCACCGGTAGCGCGCAGTGCTCGACCGGTGGTTGCGCGGGAGAGGGGCTGTTCCGCTCCGAGGACGCGACCTTCGTCGTCTGGGACCGCTCGCCGGACGGGAAGTCGGCGGTGGTCCAGTACTGGCTGGCAGGCGGGGTCGGCCCGCTCGTCGTGCGGCACTCGGGCGGCAGCGGTTCCAGCACCGAGCAGGCGATCGACCTCCAGCCCGATGACTGG # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.94, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //