Array 1 463-1754 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRWX01000064.1 Escherichia coli strain KCJK8399 NODE_64_length_21472_cov_12.242211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 463 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 524 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 585 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 646 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 707 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 768 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 829 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 890 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 951 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 1012 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 1073 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 1134 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [1158] Deletion [1175] 1176 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 1237 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 1298 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 1359 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 1420 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 1481 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 1542 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 1604 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 1665 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1726 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 125665-124477 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRWX01000007.1 Escherichia coli strain KCJK8399 NODE_7_length_131754_cov_12.871189, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125664 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 125603 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 125542 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 125481 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 125420 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 125359 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 125298 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 125237 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 125176 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 125115 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 125054 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 124993 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 124932 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 124871 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 124810 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 124749 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 124688 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 124627 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 124566 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 124505 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //