Array 1 95116-91307 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDC01000026.1 Pasteurella multocida strain 2154PM isolate swab isolate 1 contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 95115 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 95055 28 100.0 32 ............................ AATAAGACAGCCCTTTTGTGTTCTCCCTAACT 94995 28 100.0 32 ............................ ACTGATTTATTAAAGAACAAGTAAGTTAATTG 94935 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94875 28 100.0 32 ............................ AACGTGACTGATTCGAGTTCCAAAGCTACCTG 94815 28 100.0 32 ............................ TCAAAAAATCATCTAAATAAATATCAGACAGA 94755 28 100.0 32 ............................ TATACCCCACAAGGTATTAATGTGCTAAACTT 94695 28 100.0 32 ............................ TCGAGGACATCTACCCCTTTATCATGTATTAA 94635 28 100.0 32 ............................ GCAATGCAAGACAGTAAAGCGTATGGAGCTAT 94575 28 100.0 32 ............................ CGCTGAAAAACATTATATAGAGGTAACAAGTG 94515 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94455 28 100.0 32 ............................ TTTTAGACACGCAATTAGTCGACCAGCAGGTA 94395 28 100.0 32 ............................ GACGATAATATCAAAGAACTCCTTTATGTCAT 94335 28 100.0 32 ............................ GTTATCAGCGTCCACTAGGTCATTTAGTGTCT 94275 28 100.0 32 ............................ TTTTATCCAGACCGTACAACGTTTGAACCGCA 94215 28 100.0 32 ............................ AATCAGTGCAACCTGTGCTGTCTGTAAATTGT 94155 28 100.0 32 ............................ TATTGACAACTGTAATTATCTTCTATATTATA 94095 28 100.0 32 ............................ TACGGCTTCTTCTTCACTTACATATTGTAAGA 94035 28 100.0 32 ............................ TAAAGGCACACTATCCCCTACCTCTTCTTCAC 93975 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCATCCATTACTCAT 93915 28 100.0 32 ............................ ACCTTTAAACAGAAACGCTTTCGTTCCACTAG 93855 28 100.0 32 ............................ AAAAGGTTACACACCTAAGGAGGTATTAGAAG 93795 28 100.0 32 ............................ TTTAGTCAACTCATCGTCATCCTTTAGTCAAC 93735 28 100.0 32 ............................ CCACTAAGACTACTTTGAGCACGTCACCTTGA 93675 28 100.0 32 ............................ TCCTCGCGCTTGGACGAGAATCGACAAGGGTG 93615 28 100.0 32 ............................ TACTAAAAGACTCCTCTTTGTTATCGAAGTGG 93555 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93495 28 100.0 33 ............................ CAAGTGAGTGGGCAGGGTATTGTAAAGGTAACA 93434 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 93374 28 100.0 32 ............................ AAAATTCACATACAAGGTACTATACCGTCGGA 93314 28 100.0 32 ............................ GTAGATGTGCCATTCAACAAGACTCAAGTACG 93254 28 100.0 32 ............................ ACTATAATGCTACCTCACTGGGTTGGCGCTGT 93194 28 100.0 32 ............................ ATGTTTGTTCCCCTAGTTGGTTGATTGGTTGT 93134 28 100.0 32 ............................ ACTTCCGCTTGAAAGTGCTGGTTTGAAACTTT 93074 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 93014 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 92954 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92894 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92834 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92774 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 92714 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92654 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92594 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92534 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92474 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92414 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92354 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92294 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92234 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92174 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92113 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92053 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 91993 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91933 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91873 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91813 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91753 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91693 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91633 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91573 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91513 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91453 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91393 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91333 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 64 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17444-18808 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDC01000030.1 Pasteurella multocida strain 2154PM isolate swab isolate 1 contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 17444 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 17504 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 17564 28 100.0 32 ............................ TCAATGTTTAAACGTTATAATCGTCTGTTTGC 17624 28 100.0 32 ............................ GTAGGGGGTAGTATGTCACTGGGTCGCTTATA 17684 28 100.0 32 ............................ ATTTCAGTTTCCTTGTGTTGTTTGTTAATCTT 17744 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 17804 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 17864 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 17924 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 17984 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 18044 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 18104 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 18164 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 18224 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 18284 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 18344 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 18404 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 18464 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 18524 28 96.4 49 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGAAAT 18601 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 18661 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 18721 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 18781 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================================= ================== 23 28 99.7 33 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //