Array 1 366313-368196 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAABQ010000001.1 Streptococcus agalactiae strain iGBS492 NODE_1_length_411931_cov_52.885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 366313 36 100.0 30 .................................... ACGATGTTTGTGAAAGACAAAATCTTCGCT 366379 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 366445 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 366511 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 366577 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 366643 36 100.0 30 .................................... GATATTTGGAAAGATTCTGATTTTGGTAAG 366709 36 100.0 30 .................................... TTACCGAAAGAGTGGAAAAACTACTCAGTG 366775 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 366841 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 366907 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 366973 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 367039 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 367105 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 367171 36 100.0 30 .................................... CATGCTTGCTGTTGTAAATTGCCCGACTGT 367237 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 367303 36 100.0 30 .................................... TACCACCTGATGGATTATCAAGTGATAAAT 367369 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 367435 36 100.0 30 .................................... GTAAGTATTTTAAACGTGACTATTCCTGAA 367501 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 367567 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 367633 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 367699 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 367765 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 367831 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 367897 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 367963 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 368029 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 368095 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 368161 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //