Array 1 414104-415595 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIL01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain 516 NODE_2_length_649073_cov_98.0281, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 414104 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 414165 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 414226 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 414287 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 414348 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 414409 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 414470 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 414531 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 414592 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 414653 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 414714 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 414775 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 414836 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 414897 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 414958 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 415019 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 415080 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 415141 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 415202 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 415263 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 415324 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 415385 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 415446 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 415507 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 415568 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 431910-432427 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIL01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain 516 NODE_2_length_649073_cov_98.0281, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431910 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 431971 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 432032 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 432093 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 432154 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 432215 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 432276 29 96.6 32 .............C............... GAGCGGCTAAATGATGAATTAACCAGGGAGCG 432337 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 432398 29 93.1 0 ............TC............... | A [432425] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //