Array 1 942643-944257 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034479.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 14028 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 942643 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 942704 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 942765 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 942826 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 942887 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 942948 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 943009 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 943070 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 943131 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 943192 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 943253 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 943314 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 943375 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 943436 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 943497 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 943558 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 943619 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 943680 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 943742 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 943803 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 943864 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 943925 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 943986 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 944047 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 944108 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 944169 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 944230 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 960390-961866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034479.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 14028 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 960390 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 960451 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 960513 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 960574 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 960635 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 960696 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 960757 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 960818 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 960879 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 960940 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 961001 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 961062 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 961123 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 961185 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 961288 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 961349 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 961410 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 961471 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 961532 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 961593 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 961654 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 961715 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 961776 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 961837 29 96.6 0 A............................ | A [961863] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //