Array 1 23021-23170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPYD01000088.1 Xanthomonas citri pv. citri strain LMG 9322 contig_88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 23021 31 100.0 37 ............................... AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAG 23089 31 100.0 35 ............................... CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAG 23155 16 51.6 0 ................--------------- | ========== ====== ====== ====== =============================== ===================================== ================== 3 31 83.9 36 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTACGACGTCAGCACCAGCTCTCCCGGGGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAAAAAAAATACATAGCGGATTCACGGGGTCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGGG # Right flank : | # Questionable array : NO Score: 7.56 # Score Detail : 1:0, 2:3, 3:3, 4:0.20, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPYD01000255.1 Xanthomonas citri pv. citri strain LMG 9322 contig_255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1 29 90.3 35 --.........................G... GCGGATATGTGATTAGACCCTTTTACGACTTTCAG 65 31 100.0 34 ............................... TCATTGAACCCAAGGACCACTTCGCAGGGCGACT 130 31 100.0 34 ............................... TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA 195 31 100.0 34 ............................... GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG 260 31 100.0 35 ............................... TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC 326 31 100.0 34 ............................... CTGACTATCCCTGCATAGGCCACGACCTGCGAGG 391 31 100.0 36 ............................... AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG 458 31 100.0 34 ............................... CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT 523 31 93.5 36 T...........T.................. CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 590 31 96.8 0 .G............................. | ========== ====== ====== ====== =============================== ==================================== ================== 10 31 98.1 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : CAATTTAAACTCGCCCCGCCAGCCGGACGCTGACGAGGTGCAGGTTGGACATGCTTGAGGCCTGCGTATGGCAAAGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGAACCATTATTTGACGATGATGGTCTGAGGCGTGCCTGCAGGCTTGCCGTCCACCATGACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCAGCCACCTGGCCATCCTGGTAGGTCAGCTTTGCCGACACGGCCACGTTGCTCGCGCTGCCGTCCGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTCGCCGGGGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACACTGGACACCGTCACTGCGCTACCCGTGGCAGCACCGCCATCGGTGCTGGCCGCACCGGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //