Array 1 2942802-2943127 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017375.1 Stanieria sp. NIES-3757 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2942802 37 100.0 34 ..................................... TGCCAAGGAACAAATAGCCATTTTCCGCCACCAG 2942873 37 100.0 38 ..................................... AAGGTTTGCATACAAAAAAGCAGAAACAAGAGTTTCTG 2942948 37 100.0 35 ..................................... TTTCGCTCCAATGCTCCAAGCAGCTTCGGTAGTAT 2943020 37 100.0 34 ..................................... TACTTCTTTTGCTCGTGATTTTTCTCTTTCTTTT 2943091 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 36 ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAAC # Left flank : AGTTATCAACCTTTTATTTTGCGAGGATAAGTGATGGATATTTTGGTGACTTATGATGTAAATACGGAAACTAAAGAAGGACGTAGTAGACTACGTAAGGTGGCAACAGTTTGTAAAAACTATGGTCAGCGAGTTCAATTTTCTGTGTTTGAATGTCGAGTTAATGAAATGCAGTATGAAACTTTTCAAGCACAATTAGTGAAAATCATTGATAAGCAAAAAGATAGTATTCGCTTTTATCGTTTGCCATCACCGCGAGAAAAATATGTCCAGTCTTTTGGGGTGGATGATTATACTGATTTCGATCAACCATTAATTTTTTGATCATAACGCGAACCTATAGCGAGGGGTATTTTTCTAGGAGGTTCGCGATCGCTTACAGGATAAGACTTGGATGATAATTTACAGGAGCAAAATTTCTCTTCGATGAGTTACCAAATTAGGGGTTCGCGAAATTATCACTGGAAATCTTTATCTAAATTGAGGTTACAATAGGTGCT # Right flank : CTGAAAGTTCTACTTATCTTTATACTTATGAGGCTGATTGCGATCGTCCTTCGGGGCAAGAGTTCGCTTTGCGGACGAGGATTGAAACTCTCAAGGTAAGAAACTTCTAGCATTCGATGAGCAATTGCGATCGCTCTTTAGGCGAGAGGTTTGCTTCGCGTGCAAGGATTGAAACAAATATTGATACTAGGTTGTTTTGACTTTTGCCTTTTTACTTTTTCGGTTGCGATCGCTTTTTTCTCATTCAGAGGCAATCTGAATAAGTTGCCTTAATTTTTTTTGTGTTTTACTGGGATGGTTTGTTTGCATTTGAATCACAATGAATCGTCACAGTTGGACAATTTTTTGTTTAGCTTATCTAGTAGGTTTACTATCTACAGGTTGGTTGACTTTTTCTGATGCTGAAGTAGCAAAAGAAAGTTTAATTAAAGTTGGAATTGGATTGGGCGGATTGACTTTAATATCTGCTTGGATTATTGGTCGTTATGTCCATGTTCGTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : NA // Array 2 3139507-3139254 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017375.1 Stanieria sp. NIES-3757 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 3139506 36 100.0 39 .................................... AAGAGTTTTAAGTATGAATTGAAAGTGACAGGACTCGAC 3139431 36 100.0 35 .................................... ATCAACGAGATTATCCGCAGTTATTGTATCCGCAA 3139360 36 97.2 35 .......A............................ GGAAATTGCCCCAGGGGTGGCTTATCCCAAGTTTG 3139289 36 86.1 0 CT.T.......................A.......A | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 95.8 37 GGGCAACCAGATTAGATGTCGTCAGGCGTTGTGAAC # Left flank : TGGTTTGTTATGTTTGGGAGAAAGTAGAGATTTAGTTAATTCCATCGATTTATTAGCTACAACAGATTTCGAGCAACCTCTACAATATTTGATTCAAGATGATTACGGTTATTTATCTCTACCTTATTGGGTCGATCGTGTCGGTTCGAGCAAGACTCGTTGGTTAAACTACTCCCTTGAAGCTTTAGAAGTTCAGCAACCTCCTCATTCTGCATGGACAAAGATTCAAGCTCCGTAAATCAAATAATTTTTGCAAGGATATACAATTGTTAATTTATATTGGGGAGTCACATTGGCTTAAAGCCTTGGTATTTATGCAGTTAAGTTTTTTTTAGAGCGATTGAGATGCTTGAAAAATGCTGCGACCTCTGAGATGATTGAGTCGTGCAGTGTACTGTTGACTAATTTTAAAAAGATTGTTTTGTATTATTTTGATTACAAGTACAATTCATGATTTTTTACTTCAGAGTTATTTCACAGTCAACAATTTAGAGGTTGCA # Right flank : CTAATCTAACTAAATTGTTTTTATCTTATTAATTGTTTACACAATAAATATTAAAAATTGATTCCCTGTAAGGCGAATTATACTTAAGTAATTTAACCTAATATGTAATTTAAACAACTTTTTTTTGGCAATTTTTTGTAAAATTCTCTTAAACAAATAAAGTGTTCTCAAATTAGTTTGATGCGGTTTTATCAAGTTAAGTAATACTAACGTTACGTTACTTATCTATTAGTAGTTAAAGTCGGAATTAATCATTAATTTAGATTTGCCTTTATGGTTAACTCCACTGTACTTGCGCCAGGGGCAAGAGTTGTTGTTCGAGATGCGGAATGGCTAGTTCGTAAAACTCTCAAAGCTTCGGCGGGAAGTAGAGTAGTAATAGAACTTGTTGGTGTTAGTGATTTTATTAAACATGAAACGGCACAATTTATTGCCGAATTAGAAGAAGATTTAGTTGTTTTAGACCCAAAGGAAACTAAATTAACCGTAGATGATTCTTC # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCAACCAGATTAGATGTCGTCAGGCGTTGTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 3 4882387-4882643 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017375.1 Stanieria sp. NIES-3757 DNA, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ================================== ================== 4882387 39 100.0 34 ....................................... TGGCGTAGACACTGTTTTTAACGTATTCGGTAGC 4882460 39 100.0 33 ....................................... AAAAAATTATAAGCAGGTGGCAATTCAAACTCA 4882532 39 100.0 34 ....................................... ACATTTGCGATCGCATAATATTTAAGATCTACTG 4882605 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= ================================== ================== 4 39 100.0 34 ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT # Left flank : GATATGAGCCAATCCACCATGCAAAAATTGAGAAGTAATCAGGGTTAAATATTCTGGTACAGGTTGGTTAGAAGGAGAACCCGCAAAACTAGCGCTTAATTGTCTAGGAATAACCGCATAAAGCTCAAAAAAATCATTTAATTGCGAACCCAACGACATTTGATGGATAAAAACTACAATATTTATTCCAATTAATACATAAACAACTACTGGTGTTTTGTAGCTTGGATTATCGTCGTTTAAAGGTATCATTAGTATTTTTCCTGAAAATATTTTTTTTAATGTAATATTTTTAGCTTAAGCGTGTATTTTAAACAACAAAGTTAATCACGCGAACCTGTAGCGAGGAAGATTTTTCTCGAAGGTTCGCGTTCTCTGATGAGGTAAGGATTTAATCCTATTTTACATTGCTAAAATTTGATTGTTATAGTTGTCTGGAATCGAGGTCCGCGCATTTATAACCCCAAATATTTATCTAGATTGAGGTTATAGTGGGTGCT # Right flank : TGCGAGAATTGAAATAGTCATCGATAACGTAAAAAAATGGAACAAGCTACTTTTGGGGCTGGTTGTTTTTGGAAAGTAGAAGCTGCATTTCGACAAATTCCAGGTGTAGTTTCTACCTCTGTAGGTTATATGGGAGGACATTTTCCTAACCCCAGTTATCTAGATGTATTATCAAGAATTACAGGTCATGCAGAAGTAGCGCAAATTGAATTCAATCCACAAATTGTTAGTTATCAACAACTTCTCAATATTTTTTGGTCAATTCATGACCCCACTCAAATTAATCGCCAAGGAGCAGATCTAGGAGAACAGTATCGTTCAGTTATTTTTTATCATAATCAAGAACAATTCTTAACTGCCCAAAGCTCTTTAAAGCAACTTCAACAGTCTAAAAAATTTGCCAAAGAAATTGTTACTCAAATTCAACCAAAGAGTGAGTATTATTTAGCTGACGAATATCATCAGCAGTATTTAGAAAAACAACAACTCCAAACAAAAAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //