Array 1 325-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWNA01000033.1 Klebsiella pneumoniae strain VRCO0391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 324 27 93.1 32 --........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 265 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 204 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 143 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 82 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGAGTGACAGAGAGATTGACCGCCTTGTTTTGTGTTCCCCGCGCCAGCGGGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 183496-180603 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWNA01000004.1 Klebsiella pneumoniae strain VRCO0391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183495 29 100.0 32 ............................. GCGATCATGCCGTAGTCTTCGATCACGTAATC 183434 29 100.0 32 ............................. TTTGCCTTCCTGTCTGCAGAGGCGCGGACAGG 183373 29 100.0 32 ............................. CGTAGCTAAAATTAACTGCATTCGGCGCACCT 183312 29 100.0 32 ............................. CCAGCTCAATTTCCGCCTGTCCCGCCAGCGCC 183251 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 183190 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 183129 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 183068 29 100.0 32 ............................. ATTAAATTTTTCGGGTAAAGAGAAATTGCGAA 183007 29 100.0 32 ............................. CTGCGAGCTACCCTGAATTTCAGCGACAGGGG 182946 29 100.0 32 ............................. TAGTGCCATATATTATCCTCTGCGGTATGACT 182885 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 182824 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 182763 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 182702 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 182641 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTACAGGTAATACGT 182580 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 182519 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 182458 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 182397 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 182336 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 182275 29 96.6 32 .G........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 182214 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 182153 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 182092 29 100.0 32 ............................. CTCTACTACGATAACGGATCCCACGCGGGCTG 182031 29 100.0 32 ............................. GCTGCCAGCCCATTCCGTAATTGCCTGTTTCA 181970 29 100.0 32 ............................. GCGAATATAGGCATTAATGCTTTTAATAATAT 181909 29 100.0 32 ............................. CTCCGTCACCAGTTCTGTGCTATCCGGCACAA 181848 29 100.0 32 ............................. TCACGTTTGCAGAACTCGCGGAGGAAGAAGAA 181787 29 100.0 32 ............................. GATCCCCCGGAGGAGACTGATCAAACCACTCG 181726 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 181665 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 181604 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 181543 29 100.0 32 ............................. CATCACGCGCTGGCCAATGTGTTAAACCAAAT 181482 29 100.0 32 ............................. GGCATCATTCTCTTCGCTACTCCCGCCGATCA 181421 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 181360 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 181299 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 181238 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 181177 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 181116 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 181055 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 180994 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 180933 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180872 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 180811 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180750 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 180689 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 180631 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCACGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //