Array 1 175044-168274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSD010000002.1 Bifidobacterium sp. M0399 NODE_2_length_583179_cov_239.426454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 175043 32 100.0 34 ................................ TGCCAAAAATGGATAACTGTTCAGGCTTAAAAGT 174977 32 100.0 35 ................................ ACCAGGCCGACGACTCTGGACATGTCACTATCCTT 174910 32 100.0 35 ................................ GTGGACGAAAACGAACATATGGAGGATGTGTTCAA 174843 32 100.0 35 ................................ GGCTCAGGTGAGGTATCAACTCAGTATGGTATCTG 174776 32 100.0 34 ................................ ACCATGAGCCAAGGCGACCCGACTACTCTCGACG 174710 32 100.0 35 ................................ CGAAAGTCACGTATTAGCCGGCCTGCAAAGGGCAT 174643 32 100.0 35 ................................ TTCGTGGAGCCTCTGGCGAAGACCGGGGCCAGCGA 174576 32 100.0 34 ................................ CAAGCTGTTTTGAGCGCGAGCCCGTGGGGCGTGG 174510 32 100.0 35 ................................ ATCTTCTGGTGTGATGGATCTCTTGCCGCTCTCGT 174443 32 100.0 35 ................................ ACGCCCTATCGGTATCCAAAAAACCGTGACAGTGG 174376 32 100.0 35 ................................ ATCCAGCACCAGGCTTCTGCCCGAATCGTCTGTGA 174309 32 100.0 33 ................................ GATAGCGTCGTCATAGCTGGGCCATCCTGACCA 174244 32 100.0 33 ................................ TGCTGGTTTATCCACAGTTTTGTCCACAGATGT 174179 32 100.0 35 ................................ TGGTGGGTAGTGGTGTCACCCCGTGCCCGTGAAAC 174112 32 100.0 35 ................................ AATGCTTTATCAGTGAGCGAGTACGTATCACGCTT 174045 32 100.0 34 ................................ CCGTCATGCTCACCGGGGCGACCCTCAAGCCGGA 173979 32 100.0 35 ................................ GCCTATCGTGGCGGGCTGGGACACGTAATACCCAC 173912 32 100.0 35 ................................ ATGTATTCCGACACCGATTCCATACACCTATCCGA 173845 32 100.0 34 ................................ ATGGCGTGCCTGCTGGCGCCGCTGGCCGTGTCGG 173779 32 100.0 35 ................................ GCAGTAGGAGACCCCGCTGACCGTGGTCACCACGC 173712 32 100.0 33 ................................ TGGGCCGTGTCGTTGGCGCCACCGGCAATGAGG 173647 32 100.0 33 ................................ ACATTGCGCGGTACACCGGCCAGACCTCGACAC 173582 32 100.0 35 ................................ CTCGACGTCCTGCGCGGCAACTGGTCCGGCGCTTG 173515 32 100.0 35 ................................ CGACTGGTGGGATGCCAAATGGCAGGCGATATCCG 173448 32 100.0 33 ................................ GCGATGGCTGGATCTGCCGTTCGACCTGCCCTG 173383 32 100.0 35 ................................ ATGATTGTTTCACCTTTAGTTTTGGGATTGTAATA 173316 32 100.0 34 ................................ TTCAAAGTCGGAACTGAATAAGGCCAAAGAGTTG 173250 32 100.0 33 ................................ CCTGGCCCGCAACCCTCGAGCGGCGCGCATCCA 173185 32 100.0 34 ................................ CGGAAAACCCGTTTGTCTGCCCGATCTTCGTTTG 173119 32 100.0 34 ................................ ATGTAGGAAATCGATCAGCCCGATGTGCTGTGTC 173053 32 100.0 34 ................................ TCATGCGTCCAAGCTCCCGCAGGATTCCAGCCGT 172987 32 100.0 33 ................................ ACATTACTGACAGCATGAAGCAACGAGGCTATA 172922 32 96.9 33 .............T.................. AGCAGGTCGGTGAGCTTCTGGAGGCAAGCTCTG 172857 32 100.0 34 ................................ AGTCCGGACGGCAGGCATGTGAGCCTGGCCGCCT 172791 32 100.0 34 ................................ TTGACAAGAAAGACATGGGGGTGGCCGCATGAGC 172725 32 100.0 33 ................................ AGATTATCTTTTTGCTGATGTAACTCGCGCGAG 172660 32 100.0 34 ................................ AGCCCCAAGGACGCGCAGGAAGTCGAAGGCAGAA 172594 32 100.0 35 ................................ CTGCCCGCGCTGACGGGAGTGCTGAAATGGTTTGT 172527 32 100.0 35 ................................ TCGCGCAGCCCAGTGGCGCTGATGGGCAGGTGCAA 172460 32 100.0 33 ................................ AAGGAGGCCCAGCAAGCTACTACCTTGGCTCAA 172395 32 100.0 33 ................................ ACCGATATATCCTTGGGTTTGTTGGACGAAAAA 172330 32 100.0 33 ................................ TTAACAGCGTCTACGGCACTCGAAAATCCCCGG 172265 32 100.0 34 ................................ ACTGCGACCGATCTGCCGACTTAACGCCCTTCCT 172199 32 100.0 35 ................................ GCGATGGAATACAAAAATAGGGTGTCCGGGCGTGT 172132 32 100.0 36 ................................ TTGCTTCTGAGCTGACATCGGCGGCGTGGGATCGGG 172064 32 100.0 34 ................................ GCTGCTCTTGGTATCTACCCTGACCCTGATGATG 171998 32 100.0 33 ................................ ACCGTGTCAGACGTAGTGTCAATATCCGAAGTC 171933 32 100.0 33 ................................ AGCATCAGCATGGAGACAGGCACGGTGGTGGAG 171868 32 100.0 34 ................................ CGTCTCGGCTGGCCATCGGTATAGTAGCCGACCG 171802 32 100.0 35 ................................ GCCAGGGAGTGGGATTGAAATGGTTTGTTGCTATT 171735 32 100.0 34 ................................ TCGTTCGCCTTCTCCTGTCCGGGGAAGGATTTCA 171669 32 100.0 34 ................................ CAGAACACCAGCTACACGACCGGCATCAGCACCG 171603 32 96.9 35 .......................A........ AGAAGCAGAACCGCTATCTGATGGCCAAGGTGCAG 171536 32 100.0 34 ................................ TCTTATGCTCGCTATCCCAAAGGCGCCATTTGCC 171470 32 100.0 34 ................................ TTCCGGTATCGTCATACTAAGCTCAGACATCATT 171404 32 100.0 33 ................................ CCGGCGTTGGCTATCGCCGTTGCGCCGTCAACG 171339 32 100.0 33 ................................ CCGATATAACCCCGGGTGTTGGTAACGAAAAAA 171274 32 100.0 33 ................................ TATTGCACCCTTGTCAGTGATGATGAAAAATCT 171209 32 100.0 34 ................................ AAGGAAAGAACACATTATAGGGAAAGGCAATATG 171143 32 100.0 33 ................................ CGCCCTACAGTTCCTACCAGCCGGACCGTGGAT 171078 32 100.0 33 ................................ TGGCCGGGGTAGACGACCTTGCCGTCCACGCTG 171013 32 100.0 34 ................................ ACCTGGTCGATGGCCGCCTGCAAGGCGTTCGCCG 170947 32 100.0 35 ................................ ACGCTGACTAGTATCTATTCGTCAGGCGGTTATGC 170880 32 100.0 33 ................................ ATGGACCCGAGCATCACCATCATCAAGGCAGAG 170815 32 100.0 34 ................................ CGTTATCGTGACCCGCTTGGTGATACGGTCGAAA 170749 32 100.0 35 ................................ CTGGGTGCCGTGACTGCCGCGCATACCATTACCAA 170682 32 100.0 34 ................................ TATGCGCCGTCTGACAGTCATTTCCGGACTACTC 170616 32 100.0 34 ................................ ATGGGGAGCACTACCTGGTCGCTTTTGCCAAAAT 170550 32 100.0 34 ................................ AGCCTGGCCTTCGCGTCCCGGTAGTTCCCGCTCC 170484 32 100.0 34 ................................ CGTTGATATGATAGCCAGGAACTTCGATACGAAG 170418 32 100.0 33 ................................ CCTGACCATGCGGTATATGCACACATCATCGAA 170353 32 100.0 34 ................................ CGCGCACAGCTACGTAAATTAAAGGCCCAGCACG 170287 32 100.0 35 ................................ TCTGAGATACGGGTACTCTGTCCAAAGGTTTGCCA 170220 32 100.0 34 ................................ GAGGTCAAGCAGTGAGGATAAGACACAATCCAAG 170154 32 100.0 33 ................................ GACTCAGGTATATGGTGACCGAATGCTCATATA 170089 32 100.0 34 ................................ ATAGGCTATAACGCGGTCTGTGCCGCGTGTGGGG 170023 32 100.0 33 ................................ ACCGGCCCGGCGTGGGTGTCCCGGCTGTCGGGG 169958 32 100.0 33 ................................ AACCGGCCCCGCTCATCGGCGGGGCTATTCCAT 169893 32 100.0 34 ................................ TGTTCTTCGCGGCTCATGAGGCTGCCGATGGCCT 169827 32 100.0 34 ................................ CCCAACGTTCGCTACATTATATTTGACGAAATTT 169761 32 100.0 35 ................................ TGTATTACACCGAGAGAAAGAGGCCCATTATGGGG 169694 32 100.0 34 ................................ ACGCTGATCCTGTACGCGCCCGACCCTCACAAGT 169628 32 100.0 35 ................................ CCATGGGAGCCGAACGCCCTGCATCCGACGCAGAA 169561 32 100.0 35 ................................ CCGGTCTTTGGGTCGTCATGCTCGCCTGGGTCCAG 169494 32 100.0 35 ................................ TGCTGGCTGCGGCTGTGCTGCTTGCCTGGATGGGA 169427 32 100.0 33 ................................ ACGATGTTCTGCTGTTGTGCATAATCAATCAGC 169362 32 100.0 34 ................................ ATCCACAATCCGTACTTTTCCTACTACGGAGTGA 169296 32 100.0 34 ................................ ATCAAATCCGTCACGACCATGGTGGATCAGGGTG 169230 32 100.0 36 ................................ CTTTCATCCATGTATCTTTCTTGATACACCTTTAAT 169162 32 100.0 33 ................................ ATCGGGGTGCCCGCCAGGTTGTTGATGGTGGTT 169097 32 100.0 34 ................................ TATATCTGTTCTCGCGCAGCCCGTCCTTGGTGGT 169031 32 100.0 34 ................................ CTTGGCGTGGAGCCGGAGCTGTTCCGGGATAAGG 168965 32 100.0 34 ................................ TCGCATATCAGTATGTACAACGGTTTGAATCAAT 168899 32 100.0 34 ................................ CTGACCGGTGCGCTAGTGCGATACATCCGGCCGG 168833 32 100.0 34 ................................ AGCGGTGCCGGTGGTTGGTTTGCTGGGGTCTTTA 168767 32 100.0 34 ................................ GCTTATACTTTCAAATATGGTAAGAATGCTCTAC 168701 32 100.0 34 ................................ AAGGTGGTGCCCCGCAACGCGGCTTCGGACGGGG 168635 32 100.0 33 ................................ ACCAGGACATTGAACCCTCTTTTGGCCAGGGAG 168570 32 100.0 33 ................................ TTTCAACACGAAGGCAAACGGCTTATAGAGCAG 168505 32 100.0 34 ................................ TGGGAGGCCTACATATGATCGAGGATTACCAGTG 168439 32 81.2 34 .C.A....T...GT...G.............. ATCAATGCAAAGGCAAAGTTTTCACCATCCATGG 168373 32 93.8 34 ......T............T............ GCCCAGTCTTGGGCCCACTAAGGCAATGAGAACG A [168358] 168306 32 81.2 0 .A.....T....GT.....T........G... | G [168277] ========== ====== ====== ====== ================================ ==================================== ================== 103 32 99.5 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : TCCATTACTACGGGGTGAGGCGTCATATCCCTGTTGATCAAGTGATGATGTTATAGAATTGTGTGACTTTGATTTTACTGTTTTGTTTGAGCCGCGGAAATTAGACGATAGCTAGATGGCTGGTGTAATTCTGTAAACAGTGCAGTATGTTGACTGTTGTTGTGGATCATCGTTGGCGCGAAACGCTAGCAATCATGTATTCACCAGATTCTTCGCGCCGCAAAACTTTACTTCATGACGATATACGGTCTTAATTTCACATGTTTTTGAGCTGAGTTCTTTTCGCATTTCAAATCAGACAGCTATTCATACGAAGGAAGCTAGAATTTTAGTGAATCGGATGAACAGTTGTTTGATAACTGAATAGTGATGTTATCAACTTGAAGCATCATCTCAATTGCTCGACTAGAAACAGAATCTGGGTACCTGGTTTGGGCTGTTAGGAGTCGTCAGCCATTTAAAGCTGATCGTATATTGGTCATCGGATGTATCATTGTGCT # Right flank : ACTGTTACGAACGGCTCTCTGCCTGCGGCAAATGCATTGCCTCCTACGTGGAAGCCTAAAACGGAAAACTAATCGCGCTACTTTGAATTAACCAGACAGCACTGCCTCTTAGCTGGAATATGTATTAAATCAGTTCTTCCCTAAGAACTCTTTTATAAATTCTGCTCCTCAAAAACATAAGTATGAGTTGCTGCTTTGGTATAGTACCGATCATTTTCATGCCATTCTCTCATTCCTAGGCGCGGGTGTGCCGCCCGGTATAAGCTTGTATGCGATGTGTCCACGAGTAGCGGACTTGGAGGTGTGGTCGCCGATGGAGCAATTCGACGATGCAGGTGGCGCGGAATCTGGCAGAAGCGCTTCAGCCGATTCTGCATCTGTGCCATTGCACCTGGATGATGCGACTGCTGTGAACAAGGTTTCGGCCCACCCTGAAGCGACTATTCCGGATTCGGAATATTCTCTGGCTGAGATTGAGCAGCGCCGTGCCCGCCCGGTCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //