Array 1 68390-65079 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJFC01000003.1 Bifidobacterium moukalabense strain GB04 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 68389 33 100.0 34 ................................. ATGCGCAATTTTAGTCAAAATGCATGTTGATGCC 68322 33 100.0 34 ................................. ATTGTCACTGACTATTTGACTGGCGTTGTTAAGG 68255 33 100.0 34 ................................. GTTTATTATTGAGAATGAATGTCCATAAATGTTC 68188 33 100.0 34 ................................. CATCCGAAAACTGCCGGTACGACTGCAAGCACCA 68121 33 100.0 35 ................................. CATGATAGTTTCCTTTTTGTCAGCCGTCCGCCGAC 68053 33 100.0 35 ................................. CTCCTTGACTGGATTGTTGAGGTTCGCGTATTTGG 67985 33 100.0 34 ................................. ATCGACGAATACCACAAGTATCTGAACCAACAGC 67918 33 100.0 33 ................................. CGGATCCACGCCATGGTTGAGCAGGTTGGCCAC 67852 33 100.0 33 ................................. GAAGGCAAGGCCGAGGACGATGGACTCATCACA 67786 33 100.0 33 ................................. ACCGAGGGTATGAACGCTCCATGGGTCACGCAA 67720 33 100.0 33 ................................. CAGCATGACATTCAACAGCGAGTTTCCACAGAC 67654 33 100.0 34 ................................. TGCGAGCCATTGGCTGCTTGCGTCGATGAGGTCG 67587 33 100.0 35 ................................. GATATGATACATACCTTGCGGACGACTCAAACCGG 67519 33 100.0 38 ................................. GCGCGGATCGGTGAAGATATTGAATTCCGCCACGGGAC 67448 33 100.0 34 ................................. GAGCTGGTCCCGAACGGACAGTATGCAGCATCGG 67381 33 100.0 34 ................................. ACTCTATGTGTCACTCTATGGTGGTGTACACCGC 67314 33 100.0 35 ................................. ACGATCCCACCCGGTTCGACCGAACTGGTGATCAG 67246 33 100.0 34 ................................. CACAGGCGAAGTCTACATGCTCACCTCCGTCTCC 67179 33 100.0 34 ................................. GGGAATGGTGTCGGCCCGGACAACGTGATAGCCT 67112 33 100.0 33 ................................. ATGGACTGCCCAGCCTCGCTAGACCATATCATC 67046 33 100.0 33 ................................. GACACCGGCTCGGCCAGCTACACCGGCAACCTG 66980 33 100.0 34 ................................. ATTGATACTACGCTGTATGGCACCACGTCCTAGC 66913 33 100.0 34 ................................. AATATGATACATACCTTGCGGACGACTCAAACCG 66846 33 100.0 34 ................................. ACCCACAATATATGCGGCACGAATGGAATTAAGC 66779 33 100.0 33 ................................. ATGCATTCCTCGACGGATTCGCGCAGTTCCTTG 66713 33 100.0 34 ................................. TTTGAAAGGAATGGCGGTTTACGGAGATCCGAAG 66646 33 100.0 34 ................................. CTGAAATTTCACCATTGATTTTCATGAGCGAATT 66579 33 100.0 33 ................................. AAGCGCATGACAAATACTATTATCGACGGTGAC 66513 33 100.0 34 ................................. GTCCATGCACAGTCTTTTTACATTGTCAAAAGTC 66446 33 100.0 34 ................................. GCCGGATAAGCAGAATTCCGGCGACAAGATCGAC 66379 33 100.0 33 ................................. ACGAACCAGCGGGGCAATCCGATACGCGAAACC 66313 33 100.0 34 ................................. AAGGTAAAAAGTATCCCAAAAACGCAATAAAATC 66246 33 100.0 33 ................................. GTTGATACAACGCTGTATGGCGCCACGTCCTAG 66180 33 100.0 34 ................................. ATAAATTTGCGTATGTGATTATCGTATTTATTGG 66113 33 100.0 34 ................................. CAATTCAGGCGGAATAGCCAAGCCAAGCTGTCGC 66046 33 100.0 35 ................................. TTGACCGTGACCGTGTAGACATAGGATTGATTCGC 65978 33 100.0 33 ................................. ATGCGCGTGGTCTGATCTGGGACCATTCCCGGC 65912 33 100.0 33 ................................. CGACACCAACCGACGCCGGCTGGTACCTGCCTG 65846 33 100.0 36 ................................. ACATGGCACGAGACGTGCAGGTGTTCATCCGCAACG 65777 33 100.0 34 ................................. TCCTCCCGGCCGGCCCTGCCGGGGCCCGCGATGG 65710 33 100.0 34 ................................. ATCGAACCATCCGACTGGTCCGACCAGGGAGACA 65643 33 100.0 34 ................................. AAGGGCACGTGTACACGGCCCCGCAGATGATCGC 65576 33 100.0 33 ................................. TACAGCGACGGATCCAACCTCAAAGGCTACCTG 65510 33 100.0 34 ................................. CTCTTGAATGATCTGCTACCGCTCGGCCCTGACG 65443 33 100.0 33 ................................. GTAGGCGTGTTTGTGTGGTTTGCAGTAGCGTTG 65377 33 100.0 34 ................................. TAATGAGCAATCCCCCGAAACAGAAGGGCACGAA 65310 33 100.0 33 ................................. GTATCGGACTGCGGAACGCCGAAAACTTCCTGA 65244 33 100.0 33 ................................. GAATGCCAACGCGACGAACTCACCACGAGTGAC 65178 33 100.0 34 ................................. CAACACGTATGCGACCAAAACCGATGTCAGCAAG 65111 33 81.8 0 ..................T.T.GA...CT.... | ========== ====== ====== ====== ================================= ====================================== ================== 50 33 99.6 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGAAAGAGACGATTGCGTAACGTTGCGAAGACTTGTATGAAGTACGGGCAGCGAGTGCAGAATAGTGTGTTCGAGTGCTCGGTCACTCCAGCAGATTATCTAACTCTAATAAATGAAGTGATGAAAATCATGGATCAAGAGAAGGATAGCCTACGCTTATATAAATTAGGAACGAAATATTCTGAGAAGATTGAATATTATGGTGTGCAACGGCATCTTCCTGTGGACGATGTAATGATGATCTAGGCACCGAAGTCCGCCGTTGTGCGAAGTGGAAGCTCTCATCGGATAAGGCGAGCTTCGCACTTGGATAGAACTTGGAATCGAAAAGTAAGTCGACTTTCCTTTGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTCGAGTGATTAGAATAACAGGTTTTGACCTCAAACCCTGCTACTCTTGGACTCGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : GACGGGGGCGGTCATGGGATTGCGTGAGCAGCGTGAACGATGCGGGTTGACGTTGTTCCAGTTGGATGCGTTGACCGGTATCGCCTATACGCGGCTGAGTACGTTGGAGTGTAATCCGTCTGAGGCGCGGAACATGTATTTGTGTACGGCTCGGCGGATTGCCGACGTGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCTTGGCGTGGTGGCGTGTCGGCTGGCGTGACCGGGTTGAGGAGGATTCGTAGGGAACGGCATTTGACGCAACGGATGCTGTCGTCTTTGACGGGTATTCCTCAGCCTAATATTTCTTGGTTTGAGACTGGGTATCGTCCCGTGTCTCAGATGTATTTGGATACTGCGCGTCGCCTGTCGGAGGCGTTGCAGTGTGACCCTGTTGATTTTCTAATTGATTGAAAGGATTTTGTGATGAAGGCTGAGGTTGTTATTGTTTCGCGGTTGGCGCGTCATGGCGGGACGATGCTGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //