Array 1 127307-126485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHLG010000002.1 Escherichia coli strain NEH16 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127306 29 100.0 32 ............................. AACTGGACCAGTTGCCAGCCACCGTTTCATCC 127245 29 100.0 32 ............................. CCCCGAGGGAATCCGGGGAAACGCGGTAACAC 127184 29 100.0 32 ............................. TTTTCTGTCGCATCAACAACAACGGCACTGTA 127123 29 100.0 32 ............................. AAAATAGCGTGCAATCGTTTAAAGCGAGCCTC 127062 29 100.0 32 ............................. AGAGAATGATAGTTTTTGCGAACAGTTTCATC 127001 29 100.0 32 ............................. TTTCGCGAGAACGTCTACAGTGTGGAAAAAGT 126940 29 100.0 32 ............................. ATAACACTAAATGGGCGCAGCTCATGTATTCC 126879 29 100.0 32 ............................. TGATCGACGGCGTGACGATGCGCCCGCACTCA 126818 29 100.0 32 ............................. GTGATAAAATAATGATTGCAAATAAGGATATT 126757 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 126696 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 126635 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 126574 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 126513 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTAGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAAA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAGGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCCTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154286-152854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHLG010000002.1 Escherichia coli strain NEH16 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154285 29 100.0 32 ............................. CCAATTTAATACACACTAAATTATTGACATTG 154224 29 100.0 32 ............................. CCTCCACGCCAGATGAGGCGAGGGAGATCAGA 154163 29 100.0 32 ............................. AATTGTCATATTGATATTTTGTTGTTAATTAT 154102 29 96.6 32 ............................A CATTCTGGAAAAGCGCGTAAAGAAGGTGGTAG 154041 29 100.0 32 ............................. GTCTTCCCCTCTTGCCCTGTTTGACCATCAGG 153980 29 100.0 32 ............................. TTTGCGGCAAAGCAGGATGGCGCAATGAATAC 153919 29 100.0 32 ............................. ATGTGCCATAATCCTCTCGAATTTTTACAACC 153858 29 100.0 32 ............................. ATCAGGCATGTGCCGCACTGGCGCTAATGGTC 153797 29 100.0 32 ............................. AAAATAAATATCCTGAGCTAACACGCGCTATA 153736 29 100.0 32 ............................. CCGGAATTTGCCACCGTGGGACGTCGTGAAAC 153675 29 100.0 32 ............................. ATGTGCCATAATCCTCTCGAATTTTTACAACC 153614 29 100.0 32 ............................. TAATACAAAACTGTATTCATCCCGTTTAGTCA 153553 29 100.0 32 ............................. GCGACGACGATCCCGACGCTGCAAAAGGTTCG 153492 29 100.0 32 ............................. AGAATTTGCCAGGTGTAATTGCTGGACGTTTA 153431 29 100.0 32 ............................. CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 153370 29 100.0 32 ............................. TCCAGAGGTAGCGTTTATCGCGCGTTTACACT 153309 29 96.6 32 ............................T CGCGTCGAACGCCGTGCAGCTGCACCAGGATC 153248 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 153187 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 153126 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 153065 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 153004 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 152943 29 96.6 32 .A........................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 152882 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCCGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGCGAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGTCTGTTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAACGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAGAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //