Array 1 396-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFAX010000020.1 Streptococcus uberis strain GCPRG126 Contig_20_4927.93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 395 36 100.0 30 .................................... TAAGAGCGTCCTCGTCTTTTTTTATCATCT 329 36 100.0 30 .................................... TTCGGCTTTAACTGTAGCATTAGGTGAACC 263 36 100.0 30 .................................... AAAATATGGCAAAATATGACTTTGCTGGGT 197 36 100.0 30 .................................... CTATCAAATCAGCTATGTTCAAGTAAGTGC 131 36 100.0 30 .................................... ACAAGACATTGATGTATGTCAAGCAGAAGA 65 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : TGCTATGCTCGGGTCTATCAAGTTAATG # Right flank : CTGAACGATTGAAGTCTACCACGCCTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 12-2026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFAX010000003.1 Streptococcus uberis strain GCPRG126 Contig_3_315.043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12 36 100.0 30 .................................... CTCTTACTTACGCTAAAATCTTTCTTAGCT 78 36 100.0 30 .................................... TGGTACGCAAGCCAACTTTGCATTAGCTAT 144 36 100.0 30 .................................... CGGACTTAACAACGTTCAGATTGTTGCTAA 210 36 100.0 29 .................................... TCAGATTTTAAAGGAAGTTCCAGTCTACT 275 36 100.0 31 .................................... TTGAAGATTTTTATCGTAGGTATAGCCGTAA 342 36 100.0 30 .................................... TATCAGATAACGAAATGGAACAAGTTATAA 408 36 100.0 30 .................................... CTATCTATATTTTCGACCAAACAATCTTTT 474 36 100.0 30 .................................... AGTCGTTGAACCTTCCTCTTAACAGAGGCT 540 36 100.0 30 .................................... AATGACTAATTATTATTCTAATAATGACAG 606 36 100.0 30 .................................... GACTATAATGTCCTATTTTTTATGCAAAAA 672 36 100.0 30 .................................... CAACATAATCATAAGAACCAACTATTTTTA 738 36 100.0 30 .................................... AACATCTATCACTTATCAAGCATCAACATC 804 36 100.0 30 .................................... TTCAGCTTGCGTCTTGTCATAAAACTCAGC 870 36 100.0 30 .................................... TTCTCAACGCCACCTTTGTTTAACTTAATT 936 36 100.0 30 .................................... TTACCAGTGTTATCAGTCATCTGATAATGT 1002 36 100.0 30 .................................... AACAACCATGAGTGATAACAGCATCATCTA 1068 36 100.0 30 .................................... TACATTGGATTTTAGTCTATCAGACTCATC 1134 36 100.0 30 .................................... GTTGAATTTTTGAAATTCTGCTAGTGGATA 1200 36 100.0 30 .................................... GCGGAAATTAAAGCTTACTTAGACTCTCAA 1266 36 100.0 30 .................................... CAGAAAGCTTTAATTTCTTAACATCTAAGA 1332 36 100.0 30 .................................... TTTAAATACGAGGTGTTGAATGGCTAAAAA 1398 36 100.0 30 .................................... ACATTCTAAATCGAACTTACAATTATAGTG 1464 36 100.0 30 .................................... GAAGAAAGAACTTAAACAAGCGATTGAATC 1530 36 100.0 30 .................................... ACTCAATTGATAAATTAGCAGACGGACTAA 1596 36 100.0 30 .................................... CACAATTCTAAAAGGTTTCACTCCGTTTAG 1662 36 100.0 30 .................................... TTGCGAAGTGCATATAATAACCGCCTTCAT 1728 36 100.0 30 .................................... TAGTATTGTTAAAGGTATTTTGAGCGTCAT 1794 36 100.0 30 .................................... GTTTTTAAATTTATTAATTGCTTGCTTAGA 1860 36 100.0 30 .................................... TAAAAAAATTCATTTAGCTTGGGGTGCTAT 1926 36 100.0 30 .................................... CGCTTAAGTTGATACTTCGTGCGTCGCAGT 1992 35 83.3 0 ................G....AT....-G......T | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AACTCTTCATAG # Right flank : TTACATAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTACTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGAGTTTATCCAGTCTATTATTTAAAATGTATAATTATTAATAAATAAGGCGTAAAAATGTATATATTGAAATGCGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAAAGCTTTTTATCCTGGTTTGATTGATTATATGATGAGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 88393-92456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFAX010000018.1 Streptococcus uberis strain GCPRG126 Contig_18_386.153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 88393 36 100.0 30 .................................... TCAACAAGCGCAAATTTAACCAGTTAGTTA 88459 36 100.0 30 .................................... TAATTGTAAAGAGTATTTGATATATGAACT 88525 36 100.0 30 .................................... TTACGATTAGTATTGGCCAAACGTAATTTA 88591 36 100.0 31 .................................... CCAAAATAAAACAGCTAACACTAGTTCTGTA 88658 36 100.0 30 .................................... TATATCTCTGTCTCGAACCGTACAGTAGAA 88724 36 100.0 30 .................................... ACATGTGGCCAGCGTACTCTGGATGCTCTT 88790 36 100.0 30 .................................... GTCATTATCAGACGAGATAGTTCTTCAAGA 88856 36 100.0 30 .................................... ATATCTTGAAGATCTAGGATGGTCTACACA 88922 36 100.0 30 .................................... AAGTCAAACTCAGGCATATGTTCATATAAG 88988 36 100.0 30 .................................... CTTTCCATTTCGCAGGATAGTCATCTCCTA 89054 36 100.0 30 .................................... AACATCTCCCTCCATTCGATTGTGATTTCA 89120 36 100.0 30 .................................... AATCTTATCAATTTTGTATAGTGTATAGAC 89186 36 100.0 30 .................................... TGTCGAATTACCGAGCATGACTGCGCTTTA 89252 36 100.0 30 .................................... CAATGTCTGCACTCAACTCTATATCCTTTT 89318 36 100.0 30 .................................... CCAGCTAAATCTTTGTATCGTTTTCTTCTA 89384 36 100.0 30 .................................... GGTCATTAGAGCCACCGTGACAGATAGCAG 89450 36 100.0 30 .................................... ATTGAACGTAACATCAGACGGCACAAAGAG 89516 36 100.0 30 .................................... ATAATATTTACATTATTAGGATACCTGTTT 89582 36 100.0 30 .................................... ACGTATCAGATTATTTATTGATTCCATTGT 89648 36 100.0 30 .................................... TGAAGAGTTACAAAAAGAATATGCAAGTGT 89714 36 100.0 30 .................................... CACCTTTTGCCGCATTTATTGCACTTCTAA 89780 36 100.0 30 .................................... ATCGTTCTCAGCTAAGCTTTTACAAGGCTT 89846 36 100.0 30 .................................... GTAAGTTTCGTCATCAATCATCCTCCTTTC 89912 36 100.0 30 .................................... TTTTCGAACGCGTCAGAGAAGCTGGAGCTT 89978 36 100.0 30 .................................... ATTATAGAACAGGTAAAGTTATTTTTGAAA 90044 36 100.0 30 .................................... AAAAAGGACTTGCATTTCTGCAAATCCTCA 90110 36 100.0 30 .................................... GATAAATGATAATTGATTATTTGATTTATA 90176 36 100.0 30 .................................... TTAAAAGTGACGCTTGGATTAGATATAATC 90242 36 100.0 30 .................................... AAACATTTCAAATTTTTCAGATGGAGTCCC 90308 36 100.0 30 .................................... CTTGGATAACTGGATTCGAACCAGTACTAT 90374 36 100.0 30 .................................... AATTCCAGTGTCTTATATACCAGTTGCAAG 90440 36 100.0 30 .................................... TTTCCCTAAAATGGTTTCTCTTTCGTTTGC 90506 36 100.0 30 .................................... AAAACCTGTCATACGATATGAACGAAAAAC 90572 36 100.0 30 .................................... TTTCCCTAAAATGGTTTCTCTTTCGTTTGC 90638 36 100.0 30 .................................... CTACGAACTTGGCTATGACACATCGCGATA 90704 36 100.0 30 .................................... AATCAGTCCAGTCTCCTTTACCACCGCTAA 90770 36 100.0 30 .................................... CGATTCTGTCTGCTAATGCATCAACGCCTT 90836 36 100.0 30 .................................... CTTATCTTTCCCAAAACCCATACGGGTATG 90902 36 100.0 30 .................................... TAAAGAAATGGCCGAAAACGTATATACTTA 90968 36 100.0 30 .................................... CTGAAAGGTTAAATAAAGGGGCAATCGCCA 91034 36 100.0 30 .................................... TTATCAAAAACATTGAATGTCAGCGAACCT 91100 36 100.0 30 .................................... TGCGATTTTCTTGGCACTGGTTCGGCCAAT 91166 36 100.0 30 .................................... TGATATTTTCTAGTTTTTCTAATCGTTTTT 91232 36 100.0 30 .................................... ATGTCATCAAGCGGTTTTTCTTGAGTATGC 91298 36 100.0 30 .................................... TAACTGATCTCTCAATTGTTCGATTGACAT 91364 36 100.0 30 .................................... CATTAGCTAACAAAGATCACAATCCAATCT 91430 36 100.0 30 .................................... TCATTTGGTATTCTTAATCAAACTTTTCCG 91496 36 100.0 30 .................................... TAATTATTCTCTATTATTATTATAACATAA 91562 36 100.0 30 .................................... ATGCCTATGCAAGAATTTGCTAACAAGCCT 91628 36 100.0 30 .................................... TAGTGTTATGGCTGACGCTGCTATTAGACT 91694 36 100.0 30 .................................... AAAATTTTTAAGTAAAATCACTGGAGGTTT 91760 36 100.0 30 .................................... CACATCTCTCTCCTTGGTCAGCATTGGTCA 91826 36 100.0 30 .................................... ACTTGCAATGGGGGCTCTTGAGAAACTTGT 91892 36 100.0 30 .................................... TCTAGAGAGCAGAATGTGGAGCAGACTGCG 91958 36 100.0 30 .................................... AGGGTCAGTCCCCACGATTGCAATCTTGAT 92024 36 100.0 31 .................................... CAGTCGATTGCTTGATGCGGTCTAAAATTCC 92091 36 100.0 30 .................................... TAGCGTTGTTAACTTCATTGCTAAATGCGT 92157 36 100.0 30 .................................... ACACGGTTCCGTCGGTGATTTCATGACTAA 92223 36 100.0 30 .................................... CAAATTCTGGTGGATAAGTGTATGCGGAAA 92289 36 100.0 30 .................................... GCTTAGAACAAGCAATTAAAGATTTTGAAT 92355 36 100.0 30 .................................... AACCCTGCGTTCAAATTCCGACTCACGCTT 92421 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 62 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AAAAGCCAGAAGTTAAATCTATGGTTGATAAACTTGCTGCAACAATTACAGAATTAATTTCTTTTGAATGTTTGGAAAATGAACTTGATTTAGAATATGATGAAATAACGGTGCTCGAATTAATAAAAGTATTGGGTGTCAAAGTTGAAACACAAAGTGATACCATTTTTGAAAAATGTCTTGAAATTTTACAGGTCTATAAATACTTAAACAAGAAAAAATTACTTGTTTTTATCAATACGGGTTCCTATTTGAGCGAAGAAGAAGTGGAACAATTGTTTGAGTACATATCTTTGTCGAATCAATCTGTTTTATTTTTAGAACCACGGAAATTATATGATTTTCCGCAATATATTTTAGATCAAGATTTCTATCTTATGCCACCAAAAGTGGTATAATAGTAGTAGAATATATCCCAATCAATGGAATCTTTCAAAATTGAAATCCTGCTAAGATGAGTAGCGCGATTACGAAACCTTTTGGAAAAATTCTTCCACGAG # Right flank : ATCAACATCGTTTAGCCACAACTCTTCATAGTTTTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //