Array 1 92164-90756 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJV01000023.1 Pseudomonas aeruginosa strain Pae39 23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92163 28 100.0 32 ............................ TATTTGGGAGTACATGCCGCCCAGGCTGGGCT 92103 28 100.0 32 ............................ TATCAGATAATCCGCGTCTTCAGCACTTAGTC 92043 28 100.0 32 ............................ AGGTTGCCGGAGTCTGCCGAACAGTTCTGGCC 91983 28 100.0 32 ............................ TCGATCCTGGGGCCGTTGTGGCCTCGCATAAT 91923 28 100.0 32 ............................ AAGGTTCGCCAATGTTCTACGACTGGATATCC 91863 28 100.0 32 ............................ AGGAGCTGCAACTTCTTCCGCCGCCGCTTGCT 91803 28 100.0 32 ............................ TGGAGCTTCGCAAGCCGCGTGTGCCGGACTTG 91743 28 100.0 32 ............................ GTAAGGTGGTGCCGTGTAGCAGTGCTCACCGC 91683 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 91623 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 91563 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 91503 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 91443 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 91383 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 91323 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 91263 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 91203 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 91143 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 91083 28 100.0 32 ............................ AATGCGTGTCGAGCGTTGGTGCTGGGATGCCG 91023 28 100.0 32 ............................ AACCAGCGTGTCGACGCCGAGGCCCAGGCACG 90963 28 100.0 32 ............................ CTCGATGACGCATATCGCGAGGCGCTGGCCAA 90903 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 90843 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 90783 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36409-38474 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJV01000039.1 Pseudomonas aeruginosa strain Pae39 39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36409 28 100.0 32 ............................ TCGCAGATGGGGGCAAGTTCTCGTTCGACAAC 36469 28 100.0 32 ............................ TATCAGATAATCCGCGTCTTCAGCACTTAGTC 36529 28 100.0 32 ............................ ACGGCGTTACGTTACCTGTGGCGGCCGCAGGC 36589 28 100.0 32 ............................ AGGTCCTGGGGCTTCTGCAAGTTGATGTGTGT 36649 28 100.0 32 ............................ GCCTGGACAACCTCTACGGCCTGACCACGCTC 36709 28 100.0 32 ............................ TGACCACGCTCGCGGACAACATGGCCGTCATC 36769 28 100.0 32 ............................ TTCCATGCTGAGGGTAGCTACAGCACGAAGTT 36829 28 100.0 32 ............................ AAGTCCCAGGGCCAGTTCAAGCACTCTGGGAA 36889 28 100.0 32 ............................ TGCCCGGGTTGCCCGGGGCTCTCCACAGAAAG 36949 28 100.0 32 ............................ ACGCAATGTGGTTAAAGCAGTCATCGAGTTCG 37009 28 100.0 32 ............................ AGCACAGCGCCTCGACGGTGTCGTTCTGGTGG 37069 28 100.0 32 ............................ TACGAGCAACACGCCAACTGCACCGAGGCCAG 37129 28 100.0 32 ............................ ACCAGGGCGCAGACGAAAGCAGAGAAGGCCAG 37189 28 100.0 32 ............................ TATGGGTCGGAGGAGGCTTCGTCATGCCTGAT 37249 28 100.0 32 ............................ ACACGAACTCGCCTGGATAGAAGACATGGCAT 37309 28 100.0 32 ............................ TTGATCAGTCTCAAGGTGTGAGATTCCGCCCC 37369 28 100.0 32 ............................ ATGTGGTAGTCGGTGATAACGAAGCAGTTCAG 37429 28 100.0 32 ............................ TGACTTGGGCGGCCCACGAGGCATGGTTGAAT 37489 28 96.4 32 ................A........... AACATCGACGGGTCGAACTGCTCCGGCACCTG 37549 28 100.0 32 ............................ TGGAATGACCGGGCCGTCGCTGAACAGTACTC 37609 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 37669 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 37729 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 37789 28 100.0 32 ............................ TTGTCCGTGCGCGGCGCCTTGGGCAGAGTGAA 37849 28 100.0 32 ............................ AAGACGAGTACCTGAAAGACACCACCGGCAAC 37909 28 100.0 32 ............................ ACGATGGCCGGGTGATCGGTATCCCTGATCAC 37969 28 100.0 32 ............................ ATCGCCGAGCTGGTGGAGCACTTCCAGAGCCC 38029 28 100.0 32 ............................ TGGCCGTCCCAGGCCTCTTGCGGTCTAGCCTC 38089 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 38149 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 38209 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 38269 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 38329 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 38388 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 38447 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 35 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGAGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48868-46999 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJV01000039.1 Pseudomonas aeruginosa strain Pae39 39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48867 28 100.0 32 ............................ ACTAAAAGACTCAGAAATCGTGCACGCCTTCC 48807 28 100.0 32 ............................ TGCAGACGATCAAGCCGGGTGCATCGAGTGAG 48747 28 100.0 32 ............................ AGGCGATGGCTGAAGTTCCGGCTGATGCTACT 48687 28 100.0 32 ............................ TATGCCAGCGGCAACAGCACGCGAGGCTTGAT 48627 28 100.0 32 ............................ CGCAGTAGTACCCCGATCAGTAACGGCATCAG 48567 28 100.0 32 ............................ AAGGACTACGTGTTCAGCAGTCTCGGCGGCGT 48507 28 100.0 32 ............................ AGGGGGACGGCCTGTCGGCCAGTCAGTACCGG 48447 28 100.0 32 ............................ TCTGGGAAACTGGTAATTCACATAGAGTGAAA 48387 28 100.0 32 ............................ TCGGTCGGGCTACGCCTAACGTAACGTCTGCA 48327 28 100.0 32 ............................ TCCAGGCTGCTGATGGCGTGTTCGAGGAAGGC 48267 28 100.0 32 ............................ TGGATGTTGGTGGCGCCGTCCAGGGTGTAGGC 48207 28 100.0 32 ............................ TGCGAGTCCAGAACCAGGTCGATGCCGACGGT 48147 28 100.0 32 ............................ TCTCCGAGAAAATCATGACCAGCAGACGACGA 48087 28 100.0 32 ............................ GGCACCTTCAACAAGCAGCTCGCCGCGCTGAA 48027 28 100.0 32 ............................ TTGTCGTAGTAGGTGCTGACGCCACGGACCTT 47967 28 100.0 32 ............................ TCGGGCCATATCGTCGACGCCGACACCCGCAT 47907 28 100.0 32 ............................ TGGCGTAGGCGACGAGACTGTCCAATGGCCGC 47847 28 100.0 32 ............................ TCCATGTCCATGAACAACTCGGCCTGAGCCTG 47787 28 100.0 32 ............................ TGCCGCAGCGCCTGGCCCAGCCCGCTATGGTG 47727 28 100.0 32 ............................ ACAGGTCACAATGCGAACTGAACATCACACTC 47667 28 100.0 32 ............................ GGGACGAACATGCGCCGGAGATCGCAGCCACT 47607 28 100.0 32 ............................ GAACGGATCATCGGGTACCTCTACGAAACCTG 47547 28 100.0 32 ............................ TGGGCGATCGAGCACGGCATCACGCGCGAGAC 47487 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 47426 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 47366 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 47306 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 47246 28 100.0 32 ............................ AGCCTGCCGGCCCAGGACATGCAAAACCAGGC 47186 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 47126 28 85.7 8 ...................C..GT.G.. CCGCACGT CCTT [47101] Deletion [47091] 47086 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 47026 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.6 31 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //