Array 1 289-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXL010000049.1 Ligilactobacillus salivarius strain 1001095A_150126_H2 NODE_143_length_130779_cov_14.3416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 288 30 100.0 45 .............................. AAGCATGGAAAGAACAGTTGTAGATGAGTGGCCATTTGAGTTTTC 213 30 100.0 41 .............................. GACTTAGAAACAACAAGGATTTTATAACCTTTATTGTTTTC 142 30 100.0 47 .............................. ATTGTCGCTTATGTAATACCAAGAAGTCTAAACGATAGAGTGTTTTC 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================== ================== 4 30 100.0 45 GTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : AAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTTAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTTTTGGACGAAATACCCTTACTAAATGCAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTCCTCTTGTCTACTTTAATTAAATTAGATTCA # Right flank : TGCTGAAACACAAGTCAAGGTGTCTGTGATAGCTAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 215397-214776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXL010000013.1 Ligilactobacillus salivarius strain 1001095A_150126_H2 NODE_33_length_215436_cov_16.1464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 215396 36 100.0 37 .................................... AAGACAGAGGATTAGACACTGTTGAGGCACGTACGCA 215323 36 100.0 36 .................................... ATAAAACCGGCTAGACGTAAAGAAAATATAACTCTC 215251 36 100.0 35 .................................... GCGAACTTTCTAAGTCTTGACATAGTTTGATCGTT 215180 36 100.0 38 .................................... GGATATAGTTTATCTACACAAATTGTGGGACGTACAGA 215106 36 100.0 39 .................................... AGTTACGTTGAGACTGGATAAGCGCGTTGGAAAGCTTGA 215031 36 100.0 37 .................................... ATGAGGCCTTAACAAAATAAAATAAGGAGGCAACCAA 214958 36 100.0 40 .................................... GTTGATTATGTTTGGGAAACAAATCCATGGGATAGAACAG 214882 36 100.0 35 .................................... ATAACGGCTGGTTATTCTTAAATAGTGCAATCAAT 214811 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 100.0 37 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : CTGCTGAAACACAAGTCAAGGTGTCTGTGATAGCTAACA # Right flank : ATGCCTTGATCAATTAGTTGATGTATCAACAACTATTGGCATCTTTAATGGTACCCTAAACAGGCAATAGGTTAAATTAATGAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTGTTTCTTACAGCAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCCTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAGTATAAAGTAATTGCACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCCCTAGTAGAATTTTGTCTCACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGTTGCTTCTTTTCTATTCTCCTTCGTGTCTCTTGGTAAATCAAAACATACTAATAGCATCATACTTATCTTCCTTCCTCAATGAAAGTCGGTAATTTCAATCCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //