Array 1 294151-294728 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOKH01000008.1 Escherichia coli strain 715 BN4_715_1_(paired)_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 294151 29 100.0 32 ............................. CGCTCGCCCCCGGTGGCGGGTGCCGTCGCGCC 294212 29 100.0 32 ............................. CACCGTTCCTCACCTCCGGTAAACGAGGTTGT 294273 29 100.0 32 ............................. TAAACTATGTTAAAAATATCCTTGATCGTAAG 294334 29 100.0 32 ............................. GTTTTCTCCACCGGGTGCCGTTATCGTTGATC 294395 29 100.0 32 ............................. AGCGTAATAATTTCCGCAAAGGCAACTTCAAA 294456 29 100.0 32 ............................. ACCACATCCACGCCGCCGATAGTCAGAGTGAT 294517 29 96.6 32 .............C............... ACGAAAAACAGGCCGCGAGTCTCGCCGATCAA 294578 29 93.1 32 ......A......C............... GCCGATTTATCTGCACTGCTGAATGTCGTGCC 294639 29 96.6 32 .............C............... CCGCAAAAGATATTATTTTTATCCGTCAGTAC 294700 29 89.7 0 .............C..T...........A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GAGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACCGCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGGTTAAGTGCTCTTTAACATGATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATAATTCTTAAGCCGTTAAGAAATTTTAATCTATTATTCTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGTATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTAGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320275-321218 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOKH01000008.1 Escherichia coli strain 715 BN4_715_1_(paired)_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 320275 29 100.0 32 ............................. TATTTCCTCGGCTTTGGCTGCCATTGAATCAG 320336 29 100.0 32 ............................. CGTTGACCGCCATCAAAAATGGTACAACCTCG 320397 29 100.0 32 ............................. TGCGGGGAGTGAGTTGTATGACTAGCACGCCC 320458 29 100.0 32 ............................. GGACTCATTTTTTTAGGTGCATGTGTTTTAGT 320519 29 100.0 32 ............................. AAAAACCACACCCTCACCGTTAATAAGTGCGG 320580 29 100.0 32 ............................. GGCCGTTGGGCTGAGGTATTCAAGGTTTTTAA 320641 29 100.0 32 ............................. CCTTGAAAAAGACATGGCTAACAAAAACGACG 320702 29 100.0 32 ............................. TGATCGACGGCGTGACAATGCGCCCGCACTCA 320763 29 100.0 32 ............................. GCACACTGAAAAATAGCGAGTGTATCGAACCT 320824 29 100.0 32 ............................. CTACGGAAAAAAAATCAAAGAAATCAAGGAGG 320885 29 100.0 32 ............................. AGATGCCTTTGGGTTATTACCAATAACTAACA 320946 29 100.0 32 ............................. GGAGTTCAGACATAGGTGGAATGATGGACTAC 321007 29 93.1 32 ............TT............... CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 321068 29 96.6 32 .................A........... GCAACGACGGTGAGATTTCACGCCTGACGCTG 321129 29 89.7 32 .T.........AT................ GGCGCACTGGATGTGATGATGGATATCACTTA 321190 28 75.9 0 ..A........C..T....A..-.C...C | T [321209] ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGGGAAATACAGCCGCCGGCCCCACCTGAAGATGCGCAGCCTGTTGCTATTCCACTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGCTGGAAGTCCGTGCAGGAGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATATCCGGACTGGCGGAGGAGGGCAATGTAGTGATGGCATGGGCAACGAATACAGAATCGGGATTTGAGTTCCAGACATTTGGAGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTAAAAACAAGGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATCAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCCTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //