Array 1 25303-24211 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVYP01000080.1 Neisseria meningitidis strain MRSN431060 MRSN431060_contig00080, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25302 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 25236 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 25170 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 25104 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 25038 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 24972 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 24906 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 24840 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 24774 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 24708 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 24642 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 24576 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 24510 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 24444 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 24378 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 24312 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 24246 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : ATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //