Array 1 33968-34362 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJS01000002.1 Streptomyces sp. SID4912 SID4912.c2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 33968 30 100.0 31 .............................. TCTCAGGGGGTGGGAGGCGTGGTCCGAGCGT 34029 30 96.7 31 .............................C GTCGGCCGTACTCAGTGGCGCGACGCCGGTG 34090 30 93.3 31 ............................GG CGGACGGGTGGGGCAAGGCGCTGATTGGCGC 34151 30 96.7 31 .............................G TCGCGTTCCTTGTTGAACACCGGGCTGGGGG 34212 30 100.0 31 .............................. GCGATAAACCCAAAGACAGGGCTGAGGACGG 34273 30 93.3 31 ............................TG GCACCTACAGCTACAGCGAGACCTTCCGCGG 34334 29 80.0 0 .T...................G.T.-..GT | ========== ====== ====== ====== ============================== =============================== ================== 7 30 94.3 31 CCGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : GCCACGTTGTTGTCGTTACTCGACCGGCCGGATGTCGCCTACCTGGAGAGTTCGTACGCTGGTGAACTGGTTGAGCATGCTCCGGCAGTGGCTGAACGGCCCTAGCATTTGACTACTTGCAGGCTCTCGCGCTCCCGCCAGAGGAGTCGGCCGACCTGATCCGTTCCGCAGCAAAGGAAAGTTATCGTGACCGACCTGTCCCGAGCCGCTCTCAGCGCCGCCGCCTGGCGCAGGTCCAGTCGCAGCAATCAGGCGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTCCCCGGCGTGCTTCCGGTCCGCGACAGCAAGCGCCCGCAGGGGCCGGCGCTCGTGTTCGGGGCGCCGGCCTGGTCTGCCTTCGTCAACGAGGTGAAGGCGGACCGTTCCGCGTAAGGTAGCTAGCCAGGTTGGGTTTTTTGCGTGCAATGCCGGAGTCGGTGAAAGTGCTTCAGAATGACCGATCGCGCTGCTAAACCCCCTGGTCACGCAGT # Right flank : TGCCCACACCGAGGAAGTTGGAGCATCCTGGAACCGTGGCCGAGTTCGCCTTGGCGCTTGACCACTTGCAAGGTTTTGCGCTCTCGCCCCAGGCGCCTGCCGACCTGATCCGCTCCGTCATCGAGGAGAAGTACTGTGACCCCTGACTTCCGTCCCGGGCTCGGCGCCGTCGCCTGGCGCAGGTCCAGCTACAGCAACACGCAGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTTCCCGGCGTGCTCCCGGTCCGAGACAGCAAGCGCCCCCACGGACCGGTGCTCCTGTTCGGGGTGCCGGCCTGGTCCGCTTTCGTCAACGAGGTGAAGGCAGACCGTTCTGCCTATGGAAGGCTCGCCAGATTGGGTATTTTGCGTGCAATGCCGGAGTCGGTGAAAGTGCCTCAGAATTGCCGATCGCGCTGCTAAACCCCCTGGTCACGCAGTCTGCTCCCCGCGCGCGCGGGGATGGCCCGCGCTGTTCGCGGACTCGGCGG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34812-35146 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJS01000002.1 Streptomyces sp. SID4912 SID4912.c2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 34812 30 93.3 31 ............................GC GCTGTTCGCGGACTCGGCGGCCGCGACCATC 34873 30 96.7 31 .............................T ACGAACGCGCCGTACAACTGGAGCCGGACGG 34934 30 100.0 31 .............................. AGCTCATCGACATCGACATGGAAGTCGACTT 34995 28 93.3 31 ........--.................... CGACCGACCCGGTGGGTACGGCGATGACCGA 35054 30 93.3 31 ................G............G CCACGTGATCTAGTACGGCAGAGTTACATAC CC [35059] 35117 30 83.3 0 .....................G....TGTG | ========== ====== ====== ====== ============================== =============================== ================== 6 30 93.3 31 CTGCTCCCCGCGCGCGCGGGGATGGCCCCA # Left flank : GCTACAGCGAGACCTTCCGCGGCTGCTCCCCGCGCACGCGGGGGTTGCCGTGCCCACACCGAGGAAGTTGGAGCATCCTGGAACCGTGGCCGAGTTCGCCTTGGCGCTTGACCACTTGCAAGGTTTTGCGCTCTCGCCCCAGGCGCCTGCCGACCTGATCCGCTCCGTCATCGAGGAGAAGTACTGTGACCCCTGACTTCCGTCCCGGGCTCGGCGCCGTCGCCTGGCGCAGGTCCAGCTACAGCAACACGCAGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTTCCCGGCGTGCTCCCGGTCCGAGACAGCAAGCGCCCCCACGGACCGGTGCTCCTGTTCGGGGTGCCGGCCTGGTCCGCTTTCGTCAACGAGGTGAAGGCAGACCGTTCTGCCTATGGAAGGCTCGCCAGATTGGGTATTTTGCGTGCAATGCCGGAGTCGGTGAAAGTGCCTCAGAATTGCCGATCGCGCTGCTAAACCCCCTGGTCACGCAGT # Right flank : GCCAGTACCGAAACGGATAAGCGAGGTCCGCGACAGTAGGCGACCCACGACCCCGCGCTCGTGTTCGCGGCCCGGCCTGGTCTGCCTTCGTCAACGAGTTGGAGGCGAACCTTCCCACCTAAGAAAACGAGGTGCCGGGCGTGTGAGCGTTCAGCATCCTGGGACGCATGAACGTCCAGGTGACAATGCCCCGTTACGAGATCCGCGCCCAGCACACCGCCTCGACGGTCACCGTGTATCAGGCGTACTCGCCCGCCATCGGGCTGCCCGCCGTACGGGACGGTCGATTCCCGGCAGCCTGGAAGCGGGACCGGATGACCTGGGTCAAACCCAGCTTCCTGTGGATGATGTACCGCTGTGGGTGGGGTACGAAGGAGGGGCAGGAGGTCGTGCTTGCCGTCGAGGTTGAGCGGGCGGGACTCGCCTGGGCGCTGGAGCACGCGGAGCTGTCCCATTATGTGCGTGACGTCCACGCGGACGAGGCAACCTGGAAGCGGAGC # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGCGCGGGGATGGCCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 39649-40229 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJS01000002.1 Streptomyces sp. SID4912 SID4912.c2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39649 29 100.0 32 ............................. CTTGGTGGGGCGTCCGTCCTCGACATCCTCGC 39710 29 100.0 32 ............................. CAGAGGTGACACCAACGGGCGTCGGCCGACGG 39771 29 89.7 32 ....T.....T..............C... GCCACCGGCGGCTACCACTTGGTGCTGCGCGC 39832 29 96.6 32 ....T........................ CTGACGACGATGGGCAAGGCCCTGGGTAACGG 39893 29 93.1 32 ................T........A... GTGCCGAGGTCCATCACGATCGCCGGAAGCCG T [39897] 39955 29 82.8 32 G...TT.....A........A........ GACTGCATCGGTAAAACTGGCCGCCTGGCCGG 40016 29 86.2 32 ....TT.....A.............A... CAGAATGTGAAGACGCTGCCGTAGCCGGTGGC 40077 29 79.3 32 ....T.......T.T......G.CA.... GCTATGTAGGGGACGCCTCGGCGGTATGTGGC 40138 29 82.8 32 ...TT..T.....GT.............. GTGGCGGCGGCTCCGTCGAGCAGGAGCTCGCG 40199 29 82.8 0 T...T.......G.......A.....G.. | T,G [40210,40222] ========== ====== ====== ====== ============================= ================================ ================== 10 29 89.3 32 CTGCCCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGCATGACGTACAAGTGCCGGCTGAGTGCCGTGGCGAACTGCCTGGCATCCCGGTGCAGTTGTGTGTAATAGCTCCGACGTACCTCACGATTCTCGCGAGCTTCCTGGATGGCATGGGCCATCTCCAACTCGCGCTTCTTGGTGCGGTCGGCGCCCCGCTGGGTAAGCAACGCGCCCCCAAGCGTTCCCGCTACACCAGTGATCGCAATGAGTACCGCCCCCAGGTCCATTCGATCAGCCTAGACCGCGTCATTTGGCTAGCCGGATAAGGGCGGCGATGACTGCTCGCCGCCTGAGTCGCTGCGAGTGCTGATCCGAACGGAAGGCTCTAATTCTGGCTATGGGGGTTCCTGCATGGCCGGTGGTCAACGGGGCAGCCCTTAGGCTGGCCCCCGAGGTAAGGAAGGTTCGTCCGCGTTGAGTCTTTGCGTGTAATGCCGGAGTCGGCGAAAGTGCTTCAGAATGACCGACTGCGCCGGTAAACTCGCTGGTCGCGGAGT # Right flank : CGTGTCCAGTTGAGGCAGGTGTAGTCATTGGTGCGGGGGTGTCGCCCGCGGTGTCGGCGCGCCCGCCTGCCGCAACTCGTATCCGTATTGCGGCAATTCGAGAAGATCACCTACAACTGTGCTTATGAGCCGAAGAGTTGCAACATCTGAGCAGGGCGCCCAGTTCGAACTTCGTTGGGGTGGGGTCCACGTGACCGTCCAGCGCGTTCCCGCGTGGCTGATCACCTTGGTGACCACGGCCGGGAGTGCTGCGGTCGCCTGCTGGGTGGGTCGCTGACGGGCGACTCCGACCTCGGGTTCCCGGCCGGCCGGAATGCGCGACCCGAGGCCGAACCCTGGCCCATGGGTGAAGCGCATGCGCGTGAGAACTTCCCGCGTGGTGTGCGCGGCGGGCGGTGTCAGCGGGCATGTCCGGGATTCACGCCCGGTCACGCCGGACGGCCAGGCTCCGTGGTCGCGTTCAGGCCGGTCAGGAGCAGGTCGAGGCCGGTGGTGAACTG # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCCCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 43899-44173 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJS01000002.1 Streptomyces sp. SID4912 SID4912.c2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 43899 30 90.0 31 ............TG...........C.... GGTTCGTTCGCATCAGGTGCGTTTGCGATTC 43960 30 100.0 31 .............................. ACCGAACCTGCGGGGGGTGCCAGGCCGGGCC 44021 30 93.3 31 T..........A.................. GCCGGTCGACGATCGTCTGCGTCGGCGGGTG 44082 30 90.0 31 ............T............C...G ACCGTTGAAAGTCGGCGTAGTTGAGCGTGTC 44143 30 70.0 0 ...T........TGA.........AA.GAT | C [44148] ========== ====== ====== ====== ============================== =============================== ================== 5 30 88.7 31 CTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GGTGGACCACCAGCAGGTTCGGCCCGGAGCCGTCGTCCAGGGCGGTGACGGTGCGGCCGTCAGCGAATGATGCGTGAAGCTCAGTCATACGTACAAGAGTGTCGGAGCTGCCGACAACCCCCCTGCCCGCAGGCGATTGAGCGCCCCGCGCGACCTCGTTGTCCGCTTCGCTCCGTGCATGGGCGCGCGTCCGATGGTGTGCTTTCGCGAGATCTCGTACCTGTCCGGCGTGCCTGCACACCGCGTCCGGGCGAAGATCCGTCACGGGGTACGTCTCCGTCCGCAACAGCCCGACATGGGTGCGCTGGGAAACGCAGCAGATTGCGGTGCCGAGACGGCTGATGCCTGACTGATAACTGGTCGTTGGCGGCGGGAGCTTGGCTAGGCTGGCTCTCCGAGGGTAGGGGGTCGTTACATTAGGGCTTTTGTGCGTAATGCCGGAGTTGGCGAAAGTGCTTCAGAATGACCGGCCGCGCAGGTAGACCCGCTGGTCACGGAGT # Right flank : TGTCGTAGCGCACAGCGACCGGAACACCGTTCTCACGGCCGAGCCGGAACCGGCCCAGGAGGTGATCGAACGGCTCCTGGGCACCGGACACCGGTGTCACCGGACCAGGCCACCCGGCACCGCGTCGGCCGGGGCGTCAGTGACGAGGTCTGTGTGGCGCGCCGCCTGATATCGCGATCCCCCGGGGCCTCGCGGTGGACCGTCCGTCCCAAGGGACCATCCGTCGCTGGGAGTAGGTCCCGCGCCTCAGGTGCCCTCCGCGCCCGCTGGTTAAGGTCGGTCCGTATGGAGACCTCAGGAACCGGTCGTCGCCCGACGGCGGAGCGCACGCGCGACGTGCTGGAACGGCTCGCCACCGAGCGGGACGTATGGGTGGCGACGGCTCACCCTGATCACGGGCCGCACCAGGTGCCGTTGTGGTTCTTGTGGGACGGCGAGGCGGTGTGGATGTGTACCGGCGCCACTTCCGTGACTGCCCGGAACGTCCGCGTGGAGCCCCG # Questionable array : NO Score: 3.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.80,-8.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 256637-255579 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJS01000031.1 Streptomyces sp. SID4912 SID4912.c31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 256636 37 100.0 37 ..................................... ACCTTCGACCTGACCCGGACGTGGATCGACGCCGGCG 256562 37 100.0 35 ..................................... GCCGGTGAGATGGTGGCGCTCCAGCAGTGCGTCGG 256490 37 97.3 36 ....T................................ GTCGGACCAGCCGGCGACGCAGCCGGTCACCCGGGG 256417 37 97.3 35 .........................A........... GTGCTGAGCTGGGCGCCCTCGCACGCGGCGTCCCC 256345 37 100.0 36 ..................................... GGGATGCGCCGGGCGGCCTGGGCGCCGGGGCCGCAC 256272 37 100.0 35 ..................................... GGCACGGTCTTGGTGATGGTGGACATCGGGGGATA 256200 37 97.3 37 .................A................... AGCGCAGGTGCGGGCGTCGGCCAGGGCGCGGTCGGCG 256126 37 100.0 35 ..................................... GGCACGGTCTTGGTGATGGTGGACATCGGGGGATA 256054 37 97.3 37 .................A................... AGCGCAGGTGCGGGCGTCGGCCAGGGCGCGGTCGGCG 255980 37 100.0 35 ..................................... GGCACGGTCTTGGTGATGGTGGACATCGGGGGATA 255908 37 97.3 37 .................A................... AGCGCAGGTGCGGGCGTCGGCCAGGGCGCGGTCGGCG 255834 37 100.0 36 ..................................... CTCGACACCGCGACCGGCACCCTGGTCTGGCAGGGC 255761 37 100.0 36 ..................................... CTCGACACCGCGACCGGCACCCTGGTCTGGCAGGGC 255688 37 100.0 36 ..................................... CTCGACACCGCGACCGGCACCCTGGTCTGGCAGGGC 255615 37 89.2 0 ................................CTGC. | ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 98.4 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : AGCAGGCCGTCCTGCCAGGCGCAGCATCCCTTACCGACGTCGTGCACCAGAGCGAGGTACTCCGCGAGTTCCCCAGCCCCGAAAACATCTCCGAACCTATGAGCGAGAACCGCCGATTCACGCAGGTGATCCGTCAGTTCATGCCGCGCCCCCGAGACCGGACTACGACTATGCGCGTATAACTGCCTTGAAGACATAGAAAACCCCTCTTGCCAGCACGAACCTCCCCGATTCGTCTGGTGGGCAGAACCTACACGAGCCCACTGACAGTCAAAGGAAAAGTCAGGTACGAGAGCAAAAGGGCCTGCCGATGTTGCATCATCAGTACCCACGCGTTCCATGTTCGGAGCCGACTGGAAGGCCGCCCGCAAATTCGGAACCCCAAGCACACACGTGACACGCAGATCACACCCAAGGGAAATGTCCATAATCTCCCATTTGCCTTGGCGCTCACTAGAAACGCCCACTTGGACCTGGGGTGAATGCGCTGGTCAGCCAGC # Right flank : CAGCTCGCTGGCCACGTGGGACTTGCCACTGCCTCCGCAGACGACAATGGCGACCTTCCTCACGGTGCTCCAGCATAGAGAGGTTGAGGTGATCGGCGAGCCAACTCGCGGGACGTGCTGTGTCTGGCCGCTCTCCTGCCTGTTCAGTTCGGCGGTGCTCAGAGAGCCCTCTACCGACGACAGGCGTCGCCACGCGCCCTGGCTCCCCTGGTGCTCGACGCCGTGAAGGGTGGGCTGCGCTGACTGCCCAGGCGTTACACCTCAACCCTGTGCGCCAGTCCCTTCCTGCTGAGGGTGGGAGCGCTCGACGCCGGCGCGGATCACCTCGTCGCTGCCCCGCAACGCCTCTGTCATCCTTGCGAGCCAGGGCTCGGGGAGACTGCCGCTCCCCAGCGCGCATGCACGGACAAGCTGTCGGGCCGCCTCGACCTGGCGCGGCTCGGCGAGGCTGGTGAACCGGTGGTCAGCCAAACAATCACGGGCGGCGTAGCCGTCGGTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : GTGGCGGTCGCCCTCCGAGGCGGCCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 264982-265818 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJS01000031.1 Streptomyces sp. SID4912 SID4912.c31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 264982 37 100.0 35 ..................................... CCATAATGCCGTACGTACGGCATTATGGAGTCATC 265054 37 100.0 36 ..................................... TCCGACAGGGATGCGTAGGAGTGGTGGGCGTCCACG 265127 37 100.0 36 ..................................... GTCTTGAACGGCGACGGCATCGTCTGCATCGACCTG 265200 37 100.0 38 ..................................... CACGAGGACCTGCCCGCCAAAGCCGGACTGCCCGCCAT 265275 37 100.0 36 ..................................... TCGCTTGCGAGAGCCCTCTCCTGTGCGACCGATAGG 265348 37 97.3 35 ..........................G.......... CACGCATGGGTGCGGGACACGTACCCCGACCACTT 265420 37 100.0 35 ..................................... CCCTCGTACCCGAGCTGCTCGGCAACCTTGCTCAC 265492 37 100.0 36 ..................................... TCGGTGTTGGTCGACTGCCACCGCCGACCAACAAGA 265565 36 97.3 37 .....................-............... TGGAATTCCGGTGGTGACCCAAATCTGATGGCCCCGA 265638 37 100.0 35 ..................................... ACCCGGGCCCAGTACGAGGAGGCCGTCCTGGCCTC 265710 37 100.0 36 ..................................... CTCCGCCACCTGGTTCACGACTGTGCGGGCGCCGTG 265783 36 78.4 0 ......A.........-A....C........G.GCG. | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 97.8 36 GTGGCGGTTGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CCGTCGTCCAGGCCCGCATCCTCGCCCGCCACCTCCGCGGCGACCTACCCTGCTACCTCCCCTGGACGGCAGCGTGACGGACCTCCTTCTGACCTACGACGTCGACACCACCACCCCCGAAGGCCGCCGCAGACTCCGCCGCGTCGCGAAACTCTGCGAAGGCCACGGGCTTCGTGTCCAGAAATCCGTCTTCGAGATCATCGCCAGTGACACCGATCTGCTCAGACTCACCGCGGCGGTGAACGACATCATCAACCCGGACACCGACAGTGTGCGCCTCTACCGACTGCCCTCCGCAGGCCTCGCCGACGTATACACCCTCGGTACGGCCCAGATCGAAGCACACCGTCAGGACTTGGTGCTCTGACTGCTTCGGAACCTCAAGCACACACGCGACACGCAGACCGCACCGAAGCGAAATGTCCTTATTCGATGCTTCGGTCACCCGCCGGCCTTCCCAGCAACAGTTACGGATACGCTGTTCCCGCTGATCAAGCAGT # Right flank : CGGCCCCTTTGGTGGGCCCGCGCCCACGGTGTCCGGCGATGATCTCGGCCGCACTCTTCGCGTCCTCCCAGCACACACTTCGGCCGCAGATGAAACGGCTGTATCACGGTCCAGGAAGCAGGGGGCTTGGGCTTCGCGTCCGGCCTTACCACTGCACTCAACCTTCGATGCGATAAGTCACCGTGCGGCGATCCGTACCGGCTACGGGTGAAGTGCTCCTGGGAGTGCTTACGCAGGGAAAGGGTCGGCTGCAGGAGGCACTGTGGAAGCTCACAACCCGCATGGGGCCATTCGTTGACGTCATCGGTGCCCTCTCCGGTGGCCGGACGCCTTCGGACGACGTAACACCAGCGAGGACAGACCAACCAGCCGCACATGCTCTGATCAGGCAGAACGTCACTTGGCAGCACGACCGGGCACCAGGCAACACGAATCCTCACGGTCTCGTAGTGCGTAGGCCCGGGGTCCGAGTCGCCAGGGATTTTTCAGGGACTCTCAGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTTGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.90,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //