Array 1 348109-349722 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZS01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B4682 NODE_1_length_527400_cov_145.304378, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 348109 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 348170 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 348231 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 348292 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 348353 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 348414 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 348475 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 348536 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 348597 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 348658 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 348719 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 348780 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 348841 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 348902 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 348963 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 349024 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 349085 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 349146 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 349207 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 349268 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 349329 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 349390 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 349451 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 349512 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 349573 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 349634 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 349695 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 365855-366494 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZS01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B4682 NODE_1_length_527400_cov_145.304378, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 365855 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 365916 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 365977 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 366038 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 366099 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 366160 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 366221 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 366282 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 366343 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 366404 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 366465 29 96.6 0 A............................ | A [366491] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //