Array 1 2627677-2623165 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045484.1 Sulfurisphaera ohwakuensis strain TA-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 2627676 24 100.0 40 ........................ AGAAAAAGTGATGGAAAATGGCTATAGTGAGTCTGGTCTT 2627612 24 100.0 38 ........................ CCGTAGACCCTGCAGTTATTGCGAAAATAACGGGTCAT 2627550 24 100.0 44 ........................ AAAATAGGAATATCGTAGCAGAGGGTAATTCATGGGAAGAAGTT 2627482 24 100.0 41 ........................ TTATATTATGCTCTATTGTTTATGTAAAGCATAAAGTTTAT 2627417 24 100.0 39 ........................ TTATTAGAAGCCTGGGTTCTAAAACCTAAATACCCTGAC 2627354 24 100.0 38 ........................ TCCAAACAAACCAACTAAGCCAGTCCCACCCAACCAGA 2627292 24 100.0 40 ........................ ATTTTCTATTTGATTATCTGCCGTTAAATCTTATCACTAA 2627228 24 100.0 40 ........................ TAATCTCTTTCCTTTTTTCTCATCTCCTCTTCTAACACTT 2627164 24 100.0 40 ........................ TTAACATTAGTATAGAGGTATATCCGATATTTCACTCTGG 2627100 24 100.0 41 ........................ ATTTCACAGCTATCAAAATAGTCTAGAAATCCGAAAGGAGG 2627035 24 100.0 40 ........................ TCTAGCGTAAACGATTGCCAAGGCTTAGGTACTACACTTA 2626971 24 100.0 40 ........................ ATTATATTGTGTCACTGCTTAAGATTGCTAGAGAGAGTTT 2626907 24 100.0 41 ........................ CTATGCTTATCCAGCTTTCTACGATAACAAGAAATTACTGT 2626842 24 100.0 41 ........................ AACTATTGTATAAAATAATACCTAATGATGTTTTTGACTTC 2626777 24 100.0 46 ........................ CAAGAAATTATAGCAAAATTTGGAAGACTAAAGCCAAACGGATTAC 2626707 24 100.0 38 ........................ TTGCTATTGAACCTTAAGGTTAATGATTTTTCAGTTTT 2626645 24 100.0 41 ........................ GTCTATGAGTTCAACATAGTCTTTGTGTTTCTTCTCCCTAT 2626580 24 100.0 41 ........................ CTTTGCCATATCTAAGATGATATACTTCAGATACGTGATAT 2626515 24 100.0 44 ........................ ATCCTTTGCAGAAGTTTAATTTTGCTCTTTCCACCGGATGCTAG 2626447 24 100.0 38 ........................ ACCATTTCGGGCTCTCGCCCGCCCGCTTTTTCTTTTTA 2626385 24 100.0 40 ........................ CACAAACTGGAGAAAATGAACAAGTAGAGGGCGAAACAAA 2626321 24 100.0 41 ........................ AGAACAGGCTTATAATCCTGGTATCGATATTTTTAGCTCTA 2626256 24 100.0 38 ........................ GTCAGTACTCTGATCGCCTACGTTTGGAGAAAAGATAT 2626194 24 100.0 41 ........................ GAAATAATTAGTTGAAGAATTATGAAGAAAATAAGTAATGA 2626129 24 100.0 42 ........................ TCTGAGAAAGTCATACGGCGCTAAAACAACTGTCTCGCCGTT 2626063 24 100.0 42 ........................ TGATGTAAGGTAAATGGGCAACATTTTGAAATTCATCGATGT 2625997 24 100.0 41 ........................ TTTCTAATGGGACGTGGTTCATTTCTGTGTCGCCTTAGTAA 2625932 24 100.0 43 ........................ AACTTATAAGGAAAGCATTAGATGAATATTTAAAAAATCATTA 2625865 24 100.0 44 ........................ GGAAAATACATTATAGTAGCTACATGCATAACGTCTAACTCTTC 2625797 24 100.0 43 ........................ CGAGAAGTATTATAATACCTCTTATACGATTGGAAACGTCACA 2625730 24 100.0 42 ........................ ATTTGATTAAAAATAGAAAAAAATCCCATAGCTTTTTCACTT 2625664 24 100.0 40 ........................ GAGAAGTCTGCTAGAATCGATGAGATCACCAACATCATAA 2625600 24 100.0 39 ........................ TCGTAAGGTTGCAAGCACTGGCTGGGGAGAATAATGCCA 2625537 24 100.0 44 ........................ ATGAAATTAGCACCCACCAGCAATCCTATCGCTATTTCTGTCCA 2625469 24 100.0 42 ........................ GTTTTCCGTGAATGCGTCTAATAACATGTGTGAAGGACCGTT 2625403 24 100.0 44 ........................ ATGCCATTCATTACGGTCTCTTAATCCTCGTAAAGGATTAGGAT 2625335 24 100.0 43 ........................ TGATATTTCCTAATTATATGCGGGGCATGTGGTTGGCTATTAT 2625268 24 100.0 43 ........................ TAGACGTTATTTCCGCTCCTCTTCCCTTCCTCCAAGTTGAAAA 2625201 24 100.0 40 ........................ ATAAAAATCTTTTTGCCAAAACTTTTAATACTATCATAAA 2625137 24 100.0 41 ........................ ATAAGAAGAATTCAGAATTAACTTCGCGAGTTGTTTGATAA 2625072 24 100.0 42 ........................ CATATACAACATGCTCAATTTCCCAATCCTCTATTAAGATTT 2625006 24 100.0 38 ........................ GAACAGACTAGGCCCGGTTAGGTTGAGGTAAGTTTTTG 2624944 24 100.0 42 ........................ TCACCTGAAGCACAGAAGAGTAATCCACCACCACCTCCACAA 2624878 24 100.0 40 ........................ TCAAGTAGACATTTGACAATACCACCTTCTGGTTGTTCGG 2624814 24 100.0 42 ........................ ATCCCATACTTCCTTCTTATCATTTAATAGATGTTCTTCGAA 2624748 24 100.0 39 ........................ AATGCGTTGTGCTCCTGGCTTACATTCTTGATACCTTCG 2624685 24 100.0 41 ........................ AGATACTGGGAAATAGAGATTGACGGCGATGAAATCCGTTT 2624620 24 100.0 41 ........................ ATTACTATAGCAATTAGACCATCAGCACTGGTCATTCCAGT 2624555 24 100.0 44 ........................ TTAACTTCTCGAGAACTTGCTCTTTATTCTCTGTTGCGATTTCC 2624487 24 100.0 36 ........................ TTATTAGTTTCAAAATAAGGATCTATTTTATAAATA 2624427 24 100.0 38 ........................ TAGTCTGGATAAAGTGCTATTTTTATACCAATAGAATT 2624365 24 100.0 38 ........................ CTCATATATAACCATTACTTGTTTTTTACTTTCTAGAA 2624303 24 100.0 39 ........................ AGCTAGGGTGCTCAGGCTTCCAGGGTCAATAAATCAAAG 2624240 24 100.0 42 ........................ TACAACAGTTCTACAAACCTTTCGACATCATGACGTAACCGC 2624174 24 100.0 45 ........................ ATGATGTTTTTATCGCGCCTAGGAAAAATGAAACAATATCACCAG 2624105 24 100.0 42 ........................ GGTTGCTGCTTTTACCATAGCGTTACTCGTCCACACCCTGTT 2624039 24 100.0 39 ........................ TTTCACCCCCATCTTTATTTTCATTTTGCTGATTTATAT 2623976 24 100.0 41 ........................ GATATGGAGGGATGAAGAAAAGGCTCCAATTGCAGAAGTAT 2623911 24 100.0 40 ........................ TCTTAGCCTTTTGTCTCTCCTCTTTGTACTTCTGATAGAA 2623847 24 100.0 42 ........................ GAAAACGAAGATCCACGCTGCATACGTTGCGTAATCCAGTAG 2623781 24 100.0 43 ........................ TCTTCCATCGCTAACATCTCTTCTTTTGCCTTCTCCACTTCCT 2623714 24 95.8 43 ......T................. TGAGGGTAGGAACGTAAAGTTCGGCATAGACGTAATTCCGGGA 2623647 24 100.0 44 ........................ TCTGCAATGATTTCTGAAGGCGTTTCGTTTGTCTGAAAGCTTAT 2623579 24 100.0 40 ........................ AGAGAAAAACAGAGCGTGTTTAGTTGAGGCTAAGCATACT 2623515 24 100.0 45 ........................ ATTGTAGACCGAGACATTGTATAACCTATAGGTAACATTGATAGG 2623446 24 100.0 39 ........................ ATTCCGGTTGTTTAGCTATGTTGCTGGTCACGCTGAACT 2623383 24 100.0 39 ........................ AGCTAAATTATTACGTTTTTGGTGTTACATAATATACTA 2623320 24 100.0 43 ........................ TTTCTCTAAACTCCACCCCCTCACTCTCTTTAGCACGCATTAC 2623253 24 100.0 41 ........................ TCATTAACGTAAAGCTTAACGACTTGAACCGTATTGTATCT 2623188 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================== ================== 70 24 99.9 41 GATAATCCTTAATGGAATTGAAAG # Left flank : AAGTAAGTTTCCAGATTGAGGATTTTAGGACTGCAGCTGAGGGATTGAGTAGTGAACTCTTGAGGGTTTTGAGTACAGTCGTAGCCAATCCTGGGATAAGACAAGAAGTAATAGCTGAGATGACTGGGAAGAAACTTAAAACTACTATGAATGTTGTAGGGATATTAAAAAAGAGAAGACTAGTTTATCAGAAGGGTAGAGGAGATGGAATTTATCCTACGAAGCTTGGAATATTGATAAGTAAATTAAATCAAGAAAATAATAGAAAATAAATAAAATAGCTTTGTCGTTATTCCCGTTTTTTATCGGGAATTTCTTTCAATTTATAAATGATTAATAAGAGTATCTTTGTAAAGAACATTCAACCTATTTCTCTTTTTAGTATTCCCATTTTTTCAAGGGAATACTAAAAATTCAGTAATGATAAATATGTAACATAGAGAAAAGCTTATATAGTAGAAACGAAGAAAATAACATAAGAAGTAATATAAAAACAATCA # Right flank : AGGCAACGTGATTTCTTTCTATCATCTTTTAGTTCTCCTAGATGTGGTAATATATGTTGAAACTAAACCGATTGTTGAAAATACTACTGTATCTCCGCCGGGTATAGAAGTAGTAGTAGTTAAGTCAAGTAATGTATCTTTAACCTACGGAAACATTTTAAAGTCATATTATGTACTGTGGAGTGAAATCGAATTGCTTTTTACCGGACCGAAGCCACCGCAATATCATGTCCAAGTTAATGCTACAGAAATAATATACAAAGAAAAATAGTTTCACCTCCATGGTATACCTCCTTATGGATCCCGTTTTTGGCTTTAGGTTTAGCACTACTTGGTGCTTTTGTCACATTATTAGTAAGATCTAAATCTGACCATTAATTGGGATTGCATTTGTTGTACTAACATTCGGTTCAGGGACTCAAGGAGTCCAATACTATTAGTGAATAAATTTTTAAAAGTCAATTTTCTTTTTTCTTTAAATGAGGAAAAATTAGTTTTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCCTTAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 2638970-2631766 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045484.1 Sulfurisphaera ohwakuensis strain TA-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 2638969 24 100.0 44 ........................ AGAAATTCATTCTCATTAATCTTAACATACCTCAATCTATCTTT 2638901 24 100.0 39 ........................ AAACCTGGGCCTAAATACAGTATCGATATACTTACCTAA 2638838 24 100.0 37 ........................ ATCAGTCCCACTGGTGCTTGGGGCGGTGTCTGTCTTA 2638777 24 100.0 38 ........................ ATACACCGTCACCAACCGTGCCATTACCGAGTTAGTTG 2638715 24 100.0 41 ........................ AACCGAAAGTCAATAAGAACGCCGCTCCTATTGCACCCCCC 2638650 24 100.0 40 ........................ GTTCTCGAAAAGAAGGGATATATTATCGTTATTGAAGAGG 2638586 24 100.0 41 ........................ TAGGGCTGTATCAAAAACGTTCCATTCAATACCTCACCGTT 2638521 24 100.0 43 ........................ AACCGACAATAATTGGTAGACCAGCTCTATCATAACAGAGGAC 2638454 24 100.0 40 ........................ TGTATTGTCTGATTTCTTTTGTTTTTCAATTGTTTCTTTT 2638390 24 100.0 42 ........................ ATTATTATCCCGCCATTTTCTTCAATTTCCTTCAAGAATCTT 2638324 24 100.0 41 ........................ AAGATGAAATAGAAGAAAATGAGGAATTGGAAGAAAATGAA 2638259 24 100.0 39 ........................ AAGAATCATGAATGGTAATATCAGTTCTTCAAATCAGCC 2638196 24 100.0 43 ........................ CTACGTGATGGGCATGACGGACTCGTGGTTGTATATGATAGAG 2638129 24 100.0 44 ........................ TGAATTATCTAACGGAAATGCAACAGAGGGTATTGCTTGCTCTC 2638061 24 100.0 42 ........................ TTAGTACACTTAGATCAGAAGTCTGCAATATCTTAGCAGCTT 2637995 24 100.0 39 ........................ AAAGTATGTGAAGTGTGGATTAGAAGACATGTAGATTAT 2637932 24 100.0 40 ........................ TTTGATAAAATTATCTTTATAAACCACTTGTCAACTTGAT 2637868 24 100.0 39 ........................ AGAAATAAACCAATAAGAGACATCTTCGATCACACTCCA 2637805 24 100.0 40 ........................ TAAGCAAAACGGCTGCTTAGACTCATTGTTTAAGGCAAAA 2637741 24 100.0 38 ........................ ACCAGTTCGTGTAAATGTTGATTGGGAGGACTTTAAGA 2637679 24 100.0 46 ........................ CGGTAACTAATTAGCGTAGCGTACTGTGTTGCTAACCCTGGATCCG 2637609 24 100.0 46 ........................ CTGATGCTTATAAAACGATAACGGGATTCATAAATTTAAAGCCTGC 2637539 24 100.0 42 ........................ TACGAATTTCAGCGTTAACAGGGTCGCGATACATCTACAGCA 2637473 24 100.0 41 ........................ ACTTGAAGGGATTTCATGCAGGAAAGAAGCACCCCGGTAGG 2637408 24 100.0 44 ........................ AAGTAAACGAGATACTTGGCGAGAGCAGATGCTTGTATCACTAG 2637340 24 100.0 40 ........................ GTAGTCCAAACGTCGACGGGTTTCAAGCCTGAAGGGTTAG 2637276 24 100.0 42 ........................ CAAAATCAGTCCCTGAAGCAGGATTACCAGGACCTATGTATA 2637210 24 100.0 40 ........................ ATAATAGTCAGGACTGGGATTCTCTTCTGTCTTAACTTCG 2637146 24 100.0 39 ........................ CAATTGTTGTACCACTGAGTGCTTCTCCTAGAGCCTTAT 2637083 24 100.0 39 ........................ TCTTCTCCGGCGGGTGATGGAGTAGTTACAGTAAAAATT 2637020 24 100.0 44 ........................ AAACTTCTTATTGTTGACACTGTCGCTAGTAACTTCCATAAAAT 2636952 24 100.0 38 ........................ AAGCCCCCGGAACTGACAGGTTGTGTGATAATTACTGT 2636890 24 100.0 43 ........................ ACTCCAGCAGACGAGATGATCCTCCGATCGTGACGGACCTTTC 2636823 24 100.0 41 ........................ TATAATATGTTAAAGCCCTCCCTCTCCAGCGTTTCTCCTAT 2636758 24 100.0 39 ........................ AGTTTAACCCCTTTTTAAATACTTATTCTATTGAGATGA 2636695 24 100.0 39 ........................ TCAACAAGAGGAACAAAGAGCTGTAGAATTACTTGGAAT 2636632 24 100.0 44 ........................ AAAAATATTGCTTGTGTTGGCGGAAAGAGGGGCTTTAACATTAG 2636564 24 100.0 40 ........................ GTAGAAACAACGGCATCCCTATTTCCTTGCAGGAATTAAG 2636500 24 100.0 42 ........................ CATCGAACACCCCGATTCCTTTCCGTGTTTTCGCGAATATGA 2636434 24 100.0 40 ........................ TTAACGCCTCAGCCTCTCTAACTCCGGATTCGAGTAATAA 2636370 24 100.0 41 ........................ CCAGTTTACCGGATAATTAATGAAACTTCTGTAACAACTAG 2636305 24 100.0 39 ........................ ATTAACTTCACGTCCCATAGAGTGATCATTACATTAGGA 2636242 24 100.0 41 ........................ ATATGATAAAAGAATTAGTAGAAGTTAAAGTGGAAACAAAA 2636177 24 100.0 41 ........................ TCTCGCCATCTTTAGAGTAAGAAACTAGTTTTACTTTCAAC 2636112 24 100.0 42 ........................ TCGAACGACCCATTATGGGAAACGAAGCTAGAACAATTCCAG 2636046 24 100.0 42 ........................ ATGAAGGCGGAAAAGCGGGCGGGCGAGGCGGCGGGGGCGGGG 2635980 24 100.0 42 ........................ ATGATAATTCTTGATACTATCATTCTGCACCGCTATGATTTT 2635914 24 100.0 41 ........................ AGTAATAATTGTGTTTCCATATTTGTATTGGTATAGCTTAA 2635849 24 100.0 41 ........................ ATCACCGCATTCATCATTACTGCAGCAGCTCCTGCAATTAA 2635784 24 100.0 41 ........................ AATGATGATGTTGTTATAATCTACAATCCACAGCGAAATTT 2635719 24 100.0 39 ........................ AATTCTTCACTTATTTGATTTAATTCGTCTTTGCTTCTT 2635656 24 100.0 38 ........................ ATATATCCGGGAATAGCACTGGTTGTGATCAATATTTT 2635594 24 100.0 40 ........................ ACATTAACTCAGTGCTTAAGATTATTAATAATATGCGTGT 2635530 24 100.0 39 ........................ CTCCTCCTGATACACCCTGAGTTTGCGGTGTACTACTCC 2635467 24 100.0 38 ........................ CTTCTAAAAACTTCTTCATTGCTGATAAAAATGGATTT 2635405 24 100.0 47 ........................ GATAAAACAGAGTACCAGAGAGACATGGACATGGTGATAAGGACTGT 2635334 24 95.8 42 ............G........... TCTTGGAAGGCTTTACATACTTCCGCTAACTTTTGTATGTCA 2635268 24 100.0 41 ........................ TTAAAGAGTGGTAAGGGCAGAAGTCGGAAGCGTCTTTACTT 2635203 24 100.0 42 ........................ TAGAAGAAAAAAGAAAAGGAAAAAAAGAAACGTGTGGTATTA 2635137 24 100.0 42 ........................ TTTCCAACGACTTTAATGCTTCAAGTGATATTGCGTAGTATT 2635071 24 100.0 46 ........................ AGAGCTTTAAACATCTCAGCTGATTCCCCAATTTCAGCACCTACAT 2635001 24 100.0 43 ........................ ATATAATTTGCAGACCCGCTAAACAATGTCACACCTATGGGTG 2634934 24 100.0 42 ........................ CTAGCTAAAGAGATAATTGAAGAAAGAATTGAAGTAAAGAAA 2634868 24 100.0 42 ........................ CTTACAGCCCTTCTAACTCACCATCATACTGGTGGGAAGCGG 2634802 24 100.0 39 ........................ GTACTGTTCACCACTAACTCACCATTCTGCCAATACGGT 2634739 24 100.0 40 ........................ ATTATCATTTCCCGTTTACCCCCCGGTAAACGCTCTCTAT 2634675 24 100.0 41 ........................ CCCGGTTAACGTCTTATCTTCAGCTGGTACTTTTACCTTAC 2634610 24 100.0 46 ........................ ATTTCTGTTCACGTCGTTAGTTTTCTCCCTTTCCCTAAAAATTTCT 2634540 24 100.0 38 ........................ TTAGTATATCCGCTTAAACTCCCTATTTGTATAGGTTG 2634478 24 100.0 41 ........................ GCTTATTCAGTGCGGAACATTATATAGCCATGCTGCAGCAA 2634413 24 100.0 43 ........................ TCAGGTATCATCAACACAATCGATTCAATCGCATGCGATTTTC 2634346 24 100.0 50 ........................ AGAGTGTATATGTTTGACACCGAGGTTGAGGAAGTTGACAGGAAGAAGAT 2634272 24 100.0 47 ........................ TTTTTTCTTATAAACGAAAACCCGTTATTTTTCGTTTTCAATTAATG 2634201 24 100.0 43 ........................ TCATTATTCTGGATTCAGCCATTCAGCTCACCCCCTTGGTTGA 2634134 24 100.0 40 ........................ TTACTATGTGCATCCCGTATTTCCTAGCCTCACTTAATAC 2634070 24 100.0 42 ........................ AGACAAGCGTGTTCCTAAACCAGAACTAGCTAAACTAATCAC 2634004 24 100.0 43 ........................ TTGTTCTCTTTACTCCTAAAATTTCAGCAATTCTTTTCCAGGA 2633937 24 100.0 43 ........................ CATTACCGGGCTGATGGTGAGTGTACTTCAACTCGTAAACTGC 2633870 24 100.0 42 ........................ CTTTTGGTTTTGAGGCTTAAGGAGTTTAGTCAGAGGTTCGGA 2633804 24 100.0 42 ........................ CTTCTTTCGAATCGTCAAAGAGGCTTTACTTCTATTATAGGG 2633738 24 100.0 41 ........................ TTACGTCAAATTTCTATATATGAAGAAACACCTTTCAATTA 2633673 24 100.0 40 ........................ AATTCTCCGAGGAACCTCTTAGCGTCTGTTAAATCGTTAT 2633609 24 100.0 40 ........................ CGAAATTAGGAAGCCTCGCCCCTTCTGGGGGCAGGGAGCC 2633545 24 100.0 38 ........................ CTGAGGAATGTTATGCTGTAGAAATTGAGGAAGATGAA 2633483 24 100.0 43 ........................ TCTCTTTCGAAATAAACCCCCTCGCGAGGGCTTGTTTTAATAA 2633416 24 100.0 43 ........................ ATACCCCATATAGTATGTCGGAAAACTCCTTGGCCCTAGTACA 2633349 24 100.0 42 ........................ GTGAAATCTATCGCAATCTCAGGAGCGGGGGGTGTGATCGGT 2633283 24 100.0 42 ........................ ATTTTACTTCAGTATGCCGGAATTGACGTGGATAGTGTTAGA 2633217 24 100.0 42 ........................ GTAATTTAACAACTAATATCCTGTCCCCATAGCCTGTATATT 2633151 24 95.8 41 .....C.................. ATTTTGAAACCATTTCGACCAAACTCATTTTTCTATTACCA 2633086 24 100.0 43 ........................ ATTGATATCCTCTCTCAAGAAAATATTCTATATCTCCTTCCAT 2633019 24 100.0 43 ........................ GCCAAAACCTCTATAGACTATTCAACATAGCCGGTAAAGAAAA 2632952 24 100.0 43 ........................ GGGGCAAAGAATTCCACTTTTGTCCTTCAATCTCCGATAGTCT 2632885 24 95.8 43 .....C.................. TTTTCGCTCTGTCCGACAAAGGGTCCTAAGACTTCTGCAAAGT 2632818 24 100.0 39 ........................ TAGAAAAAAAGGGGAAGAGTTTATTAAGCCCCCCTCAGA 2632755 24 100.0 42 ........................ CACGAGATACCGTAGCAGCAACTCTATGACCCTCAGGTAGGG 2632689 24 100.0 39 ........................ TGTTGTAACAGACTTTGCAGTTCTTCAGCACTTAACACT 2632626 24 100.0 39 ........................ ATATATCCAGGAATAGCACTGGTTGTGATCAATATTTTT 2632563 24 100.0 43 ........................ ATCCAGTATTACTCCTTAGGACGTAATCTATCTCTTCGTCTGA 2632496 24 100.0 41 ........................ ATCCAAAGTTTGTATAACCAATTACAGAACACCTCAACAAA 2632431 24 100.0 37 ........................ AATTTATTGTCCATCCGTTAGGTAATGGCGAGATGTA 2632370 24 100.0 42 ........................ AGGAGCTCCAGGAAATCATCGATGCTTTGCACTTCTACTCAG 2632304 24 100.0 41 ........................ GTGTGCTGGTGGGCGAGGATCAGATGCATCCCGTATTTTCT 2632239 24 100.0 42 ........................ AAAATAATTTATACTCAATAGACTTTAAAAACTTAGTCAAAT 2632173 24 100.0 41 ........................ ACTCTTTGACGTCTTCTTAGCTCTGATGGTCGGTGCGTATT 2632108 24 100.0 40 ........................ AAATTGTTGAAGCATTAATTCCGTTTGCCTTTTCTCATAA 2632044 24 100.0 37 ........................ AAATATCTGGAGGAAATTAAACCTGAGAATATACAGA 2631983 24 100.0 45 ........................ ACACTAGTCTTACCCTGAGTTACACTTATCAACCCTAAACTTTCA 2631914 24 100.0 38 ........................ GTTTAGAGAAGATATACTTAGGGCCGAAATTAAAGAAG 2631852 24 100.0 39 ........................ GAATTTATTCTGCTTATGAGCTCTGTAACGGTTATCTCG 2631789 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 111 24 99.9 41 GTTAATCCATAATGGAATTGAAAG # Left flank : TTTGCACATAACTACTTCTAATAACTTCTTAGAAAATAAAGATATTATAATTTTTTCTATGTTTTATTTCGATATCTCTCAATTTTCTTAGATTTTAGGTTCTTAAATTTAAGCGTTAATTTAAAAGTAAAATATGTCGTTAATCACGATAAAAATTAAGTAATCCTCAAAGTATATATATGCAATTTCCTATCGTAAGAATAGAGTATATCAATAAATTTTCTTAATTTAAAATCAACTAGTTATTAATGCTTTAAAGTTCTATAAAATTTAGACTATATCTTTGTCGTTATTCCCGTTTTTTATCGGGAATTTCTTTCAATTTATAAATGATTAATAAGAGTATCTTTGTAAAGAACGTTGAATGTATTTCTCTTTTTAGTATTCCCATTTTTTCAAGGGAATACTAAAAATTCAGTAATGATAAATATGTAACATAGAGAAAAGCTTATATAGCAGAAACGAAGAAAATGATAACAGTAATAGTATAAAAATCTTCA # Right flank : CATAATGGAAATTACATATAAATAAAAAGCTGCAATAAAGAAAGAATTCGCATAAGGAAAATTATACTCCAGTAATTATCTTATTATTTTCTTAGTATGTTTTCTATAATTATATACTTCTCAGTTAATATCTATTATTTTCTCTATGCTATTAACTTTTAATTTTCTATAATGGAATAAACCCAGAAAGATCATCATAATTACTTCTAAGCCTTCATGAAATTGTTTTCACACAAGTAATGCAAAGTTTTAGGTCTATATAATAAATCGTAAACTCGAATATATGTACCGTAAAGGCTAAGAATGGACTTTCAAAAACATTTATAGTGAATGTTAATAAGACAAGATGAGTCAGTTACTCAGAATTAAAACGATTAGGCTCATAGAAAAATTAATTTCATAATTTATATAAACATTTCTGCAAATACTTATTAATCTCAAGAAATGAAAGAAGTATTTTAAGATAGAATACTTAGCTTTAAAGCCAAAATTTTTGTCTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCCATAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 2647753-2646159 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045484.1 Sulfurisphaera ohwakuensis strain TA-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 2647752 24 100.0 41 ........................ TCTTTAATGCTGTCACAATCACATATGAGTTAACACCACTA 2647687 24 100.0 40 ........................ TTTTCCTGTCTACTAAAAAGTGGAAGCAGTTATAGTTCCT 2647623 24 100.0 42 ........................ ACCTCACTACTCTAATATTGAAATTAAAAAATTTAATAATTC 2647557 24 100.0 39 ........................ GACAAACCTGTCTAATCCCATTCCCTACTTTTATTGCTT 2647494 24 100.0 40 ........................ CCTTATATTTTCTCGCTGTGGTTGTGGTGTTTTTTGCGGA 2647430 24 100.0 41 ........................ TGGTATTCTCCCCTGAAAACCACACTCCTACATTGCTCAAT 2647365 24 100.0 40 ........................ ATATGATACACAAACACAATCCCGATTTTATCAAACGTAT 2647301 24 100.0 41 ........................ TGAACAAAGGTTCTCCCTTATCCTTTTTCCATCCTAAACGT 2647236 24 100.0 42 ........................ GTTGGAAGACCAGTAGAACCTCCACTACCAGTACTAAATGGG 2647170 24 100.0 40 ........................ ACAGTATACGGCCCTCAATTCAGCGTAAAAAGTTACGGAA 2647106 24 100.0 42 ........................ ATAAGTTATTCATTATCAATAATTCTCTTATTATTGTTTTAA 2647040 24 100.0 39 ........................ TAAATGGTACTAAAACCCTCATATCCGCTAGGAATTTTT 2646977 24 100.0 39 ........................ ATTCTCGAGTATAGTCATCAACTATTATAATGTTCTCCA 2646914 24 100.0 43 ........................ CTTCATTGTACAACCTCCGGCAATAAGAATAACACATAAAGAA 2646847 24 100.0 45 ........................ ACGGAAGTCGATGGGCTTTGGTAAACTGGGGAGTTTACCGGGAAC 2646778 24 100.0 40 ........................ TTATTTCTACCTGAGGTGTTTCCTCAGCGGGTGTGGGTGT 2646714 24 100.0 37 ........................ ATTTAGTAAACTGGCTGGTATCTCAGCCATTGTTGTT 2646653 24 100.0 46 ........................ AATACGATACAAATTGGTTCTCTTATCTCAATCCTTACTCAAGTTT 2646583 24 100.0 39 ........................ TTATCCCTCGCACAATGAATATGTTGTTCCTATAGACAA 2646520 24 100.0 42 ........................ TCAAGATATGAAAAAACTCTTTCAGCCTTCTACTAACTCTAA 2646454 24 100.0 45 ........................ CTGTAGAATAATATGCATCTAAAAGTTCTTGCAACTTCATCATCT 2646385 24 100.0 43 ........................ GTTCATCCGTAACAATTATTATCACATCATCTTCAGAAGCAAA 2646318 24 100.0 44 ........................ ATAGTTACTCCTCCCGCCACATATATGACGTTTCCGCCGTTATT 2646250 24 95.8 44 ....G................... TTTAAAATTTTGTGTGTTAGACATACGAAAAATCACCCGATTAG 2646182 24 95.8 0 ....G................... | ========== ====== ====== ====== ======================== ============================================== ================== 25 24 99.7 41 GATAATCCTTAATGGAATTGAAAG # Left flank : CTTCCCAAACCTTCTACAGGTTTTCCGTACCAAGTTATTGTTGTCCAATCTATTGATAGTTCTATCTCCTTCACGCCCTTAAGTGTTTCGAGTGAGATTTGTTTCACTTGTTCCAGTGTTTTTTCCGCTACTTGTAACCCTTGTTCTTCAACGTAATTCCTCACCGTTTGTGGTGATACGTTGTAAGCTCTGGAAACGTTTTCCACTGAATCTTTGTGTAATGATGCTGAGATCAAGGTTTTTGTAACTTCCTCTCCCTTTCTCCCTTGGAAGTTACTCATGGAAATTAATTTATACCCTATTTGTTGAGTGTTTAATGAGGGAATTGGCATTACCATGAGCCCTTATGGTAATACCGATTCCCTCGCTTTAAACCTTTTTTCCCAATTTGTTGAATTCTTGATGTTGTTATAAACTTGGTTATGTTCAACAAATTTAATATTGTTCAATCAGAATTATTTTTGTAAAATGATTTTGGGAGTACCGTTCAGGGCGGGGAG # Right flank : TTTAGAGCATTGACGTCGTTAGCCGAAGTCGCAGCAGTGTAAGGATATTCCTCGATAACATTAGAAGATAAAGTTATTATGTCTCAGAGGTTTCTGAGTAACTTTTCATCTTAACCACAACTTCCCCAAGGCCGATTCCCCTACTCTTCCCTATCCCTAAATAGGAAGCTACGGTTAAATACTTCGAAATAGCTTTCTTGAGCTTCTTGTACGGGATATCAAATTCCATCCATCCTACAAAACCTCTCGATGTCCTTAATCTCCCCTTATCGTCATTTCCTATGACTACAGTCAAGGGTTTAAGTTTATACCCTATAACTCTAGATAAACTATTACTCAGAACCCCAAGCCTAAAGGATTTTAAATCAAGCTCTATATTACTGGTATTTCCATATAAAGCCCTATAAGCCCTATAAGCATAACTCACTATTAAACCAACAGAAGGGATTAGACTATACCCCGGGTTAACATTCTTATATTTCTCTTTCAATGACGGAGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCCTTAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 4 2653381-2649007 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045484.1 Sulfurisphaera ohwakuensis strain TA-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 2653380 24 100.0 41 ........................ GTTAATTTTTCGGATTCTTTACGATTAGGTTTTAAAGATTT 2653315 24 100.0 40 ........................ AGGAGATTGCAGTTGATAGGGTTCAGTCAAAGATAATTAT 2653251 24 100.0 43 ........................ GAACTTTTATCGAATCCCTATACTTCAACACGCCGTAACGCTT 2653184 24 100.0 40 ........................ ACAGAAAGATTCGATGTAGTGACTGGGTCACCGCCCTGTG 2653120 24 100.0 40 ........................ AACTTAGTTAAAGATAGTGAACTAGAGGAAGGTGATATAG 2653056 24 100.0 42 ........................ GTTGAGCCTCCAGGCCATATTCCCTACTCTCTCTATCCTCCT 2652990 24 100.0 40 ........................ GATTCTGTCATATCTTGTATCTTCACGAAGGGAATATTCC 2652926 24 100.0 42 ........................ ATACTCTATTACATTAATTATAATAAGTACGGTATACGTAGA 2652860 24 100.0 39 ........................ TCTGAAAGTTATCTTTATCGTCTGACAAGCTAAAGATGA 2652797 24 100.0 44 ........................ ATTTTATATTCTTCAATGCATTCATGTAAGTTTTTTTATTTATG 2652729 24 100.0 37 ........................ ATTGCTTTGGCTGCAGTGCTTTTCTTTACGATTACAA 2652668 24 100.0 41 ........................ TTATGTGAGAATTTTCTGCCATCTGTTTAACTTCGTCTTTA 2652603 24 100.0 41 ........................ CTAACAAATCCAAGACCAAACCCGGTGAGTCCTAAAATTTC 2652538 24 100.0 40 ........................ GTTACCATTAATCAGTATCTCTGTATGGTGACACTGTCCA 2652474 24 100.0 39 ........................ ATTCTACTTAGTAGATTATATGCCTCCTGGACTACCGGC 2652411 24 100.0 38 ........................ ATAATACTTGCTAAGCCAAATTGACGCATCATCGAAAA 2652349 24 100.0 40 ........................ AATGCTCATCGTGTTTTGGAGTGGGTTTCCCACAATGTCA 2652285 24 100.0 42 ........................ CATTATGCAGGCTTTACCGGTCGACCTCATTATTTTAATTCC 2652219 24 100.0 38 ........................ CTAACTAAGAAGAGCTTATCAAACACCTCACCTATAGG 2652157 24 100.0 42 ........................ ACAAATTGTGGAACTGGCATGCTTGTCATATTGGTTAATTTA 2652091 24 100.0 44 ........................ GAAGTTAGGGTCTCTGTTAGGGTCTCCTATCGTAAAATAGAAGT 2652023 24 100.0 40 ........................ TTAACCAGAGTCCCGTTTATCAGAACGGGTTCACTTGTAT 2651959 24 100.0 44 ........................ ATTTAGGTATGCCAGTCTCTACTAAAAACATTACAATTCTCTTC 2651891 24 100.0 40 ........................ TTTATTACCTCTAACCTCTTTCTCTCTTCACTATCTAACA 2651827 24 100.0 40 ........................ TTTTGTATTGTACCGCTTTTCTGAAGTCCTTATCACCCCG 2651763 24 100.0 44 ........................ ATTTGTATAGGTTGAACGGGGTTCAACGGATACTCGAAACGTTT 2651695 24 100.0 41 ........................ CTCAAAGTGACTTTGAGCAATGAATTTGACACATTTACAGA 2651630 24 100.0 40 ........................ GTTGTTGCTCTGTCCCGCATTCAACGTCACTACAAACCTG 2651566 24 100.0 40 ........................ GAAATCAACACCTAAAACAGATGTTTTAAGTGTAACACAA 2651502 24 100.0 41 ........................ TCCCTTAATGATCTCAATAAATCAGTCAATTGCGTAGAACT 2651437 24 100.0 41 ........................ ACTGTGCTAACAACTCGGGCTCAGGCATATCATATTCGCCT 2651372 24 100.0 39 ........................ GAAAAAGTTAAAGAAGAAGCAATGAAACAGTTTTCCTTC 2651309 24 100.0 42 ........................ TATCTGCAATGACGTATGGAATGGGCAAACGTTGATTAGCTT 2651243 24 100.0 39 ........................ TATTATTGCATGCTCTCTAAAATATCTGATATTATGTAC 2651180 24 100.0 40 ........................ AGAAGAAGTTTCGAAACGGTACGAAGGAAATCTCATTACC 2651116 24 100.0 38 ........................ ATTCTTTTATGGCACTTAATAGAGTTTCTTCTGGTGTT 2651054 24 100.0 40 ........................ GAAGTAATGATGTAAGGATATTGAGAACTATACCAGCTAC 2650990 24 100.0 40 ........................ CAGATCTCGCAGACGCCCTTAAGAAGTTTGCTGAGGGCTT 2650926 24 100.0 41 ........................ ACGAGATGACCACAGGAGTTATCACAAATGAGAATAATGAT 2650861 24 100.0 37 ........................ GTGAATAAGGAAAATTTTTTCTGAATAGCTGTTCCTC 2650800 24 100.0 40 ........................ ATGATAACTACATTTCCCATTCGGAAGACAGTGCTTTTGA 2650736 24 100.0 42 ........................ TCACTCCCTTCCCCTGACCCCCCGCTGATTTGAAAGGATTGA 2650670 24 100.0 42 ........................ TTAATTTATTGCCAGACTGCCTGTCCTTTTCAATTATCTGGA 2650604 24 100.0 43 ........................ GAGTATCCTTCTGACTCATATTCACCAGTGATATGGATATCTG 2650537 24 100.0 46 ........................ TACTTCTTCTTAACGAAAAACTTATATTCCACACAGGCCCAAGCTC 2650467 24 100.0 43 ........................ TTGAGGTAAGTCTCTGCGGAATTCACTATCTGAACTACTGAAT 2650400 24 100.0 39 ........................ CAAGAAATTTAGCTAAAACATAAAATGCGATGGCATCAG 2650337 24 100.0 41 ........................ TATCTGAGCGTCGAGGCGTCCTGAACGTCTATTAGGTATAC 2650272 24 100.0 42 ........................ GCCTTGGCCATAGCAGAAACTATTATCCGCCATCTGAAATCC 2650206 24 100.0 44 ........................ GTAGTATATCATCCATATTAGACTCAATCACGTTGTTAGCTTTT 2650138 24 100.0 42 ........................ ACTCCACTAGCCATCCCTACTAGGCTGCTTAGACCCCCAGAC 2650072 24 100.0 40 ........................ TCAACATATGATGGGAATAAATGGATTCGTGCTTCTCCAA 2650008 24 100.0 41 ........................ TTAACGACTCCCTCAAGGTGTTCACTACGTTAAAGGCCTGG 2649943 24 100.0 40 ........................ TATACCACTGAAGGCCTAAGAGATTATAGGAATCAGTATA 2649879 24 100.0 42 ........................ CTTCTTCATCAACCACTCTTCAATCTCCTGTAAAGAAAACTT 2649813 24 100.0 40 ........................ AAAATCTATTGTAATATTTTTGAAATCAACACTAATATAA 2649749 24 100.0 44 ........................ ACCATAAATACAACTACAAAAGTCTATGTTAACACTGGGAGTGG 2649681 24 100.0 42 ........................ TTAATGCCACAAAAACTAGAAAAAATGCCTTACACTTTCAGA 2649615 24 100.0 41 ........................ GATATTCGATATTCTATTATGAATTCATCTCCTTCATCATT 2649550 24 100.0 37 ........................ TAGAAAGTGCTACTGTAGGCCCATATCCACCATGCCA 2649489 24 100.0 40 ........................ CATTCTTGCCGGATTAATTCTAATAATTTTTATAGTACCA 2649425 24 100.0 44 ........................ ATTTTCGATGTAGTGACAGCATTTTTATCAGACCTTAACCTCAC 2649357 24 100.0 41 ........................ AAAGTCTACTTATACCAAATTGATAAATGGTTTGTCAAACT 2649292 24 100.0 44 ........................ TTCATCATCAACACTGATGTAGCCCCTTTTCTTAAACTCTAGAA 2649224 24 100.0 41 ........................ TCTTCCAACCATACCGCGATAGGTCTAAATGATTCATTAAA 2649159 24 100.0 40 ........................ ATTATTAAGCCGGGATTGCCAGAAATTGCCGCCAACTCGT 2649095 24 100.0 41 ........................ ATCTAATAGACAATTCCAGATTAAACGTATAACTAATCCGG 2649030 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================== ================== 68 24 100.0 41 GATAATCCTTAATGGAATTGAAAG # Left flank : ACCTTGGGTTTTTACTGTTCTAATATAACGTTTGATCTTCTGTTTTTCCGTATCAATAGATGAAATTGCAATATCATTGGCACCATTTAATTTTTGATTCTATCTCTACTGTTGAAGTTCTATTTAAAAAATTGTTAACTTAAGGAAAATATTATTACCTAGTAAATCATCTAGTTTTATCTACTAGATAATGTAATTTATTTTATTATTTAAGAGAATTTCTTGATTTTATAAAGTTAAATAAAATAAAGACTATATGTTCTATAAAATTTTGAGTATATCTTTGTTGTTATTCCCGTTTTTTATCGGGAATTTCTTTCAATTTATAAATGATTAATAAGAGTGTCTCTGTAAAGAACGTTGAATGTATTTCTCTTTTTAGTATTCCCATTTTTTCAAGGGAATACTAAAAATTCAGTAATGATAAATATGTAACATAGAGAAAAGCTTATATAGCAGAAACGAAGAAAATAACATAAGAAGTAATATAAAAACAATCA # Right flank : ATTAAATGTGGGTTACTCCGCCCCTTCACGGTACTCCCAAAATCACCTCCTTAAAAATAAACCTGTAGTATTAGTAAGCGTTTCCTCTGATTTATTTAAATAAATCTCTGCCTCAGATATATTTTCAATAATTTTTGAAATTAGTGATTTGAAAGTCCTCATTTTCACGTTATCCTTGAGGATCGTGTACAAGGAGTAAACGAGCACGGCAAGTAAGAAGATTAACATGCGGAAAATGAACTTTGTTGAACACGTAAAGGGGAGGAACGATTTAACACTCCTATAAGACGTTTCTATCGGATTCCTCACCTTGTTATATAACTCCAAGACCTTATTCTTGGGTAAATCGAGATTTGTAGCCCTAGCGAAGTAAACAACCTTCTTCTTTTTCCTCTTGATCTTCTCCCTGCGATACACGATCAGCCTAAACTTAACCTGCTCATCCTTACTACGCCTCTTACTATTCGTAATATATTCACCATCAAACTCCTCGTAGATCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCCTTAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 5 2685335-2687945 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045484.1 Sulfurisphaera ohwakuensis strain TA-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================================== ================== 2685335 25 100.0 38 ......................... TATTTGAATGAGAAAGAGATAACGAAAGTTTTGAATTT 2685398 25 100.0 43 ......................... TATTGAGACAGAAGGAAGCGGGAGTTAAGACCCTCAAAGAGAT 2685466 25 100.0 40 ......................... TTATGGCAGATGATAACTCGTCAATTGCCTCTTCTGCACT 2685531 25 100.0 39 ......................... GCTTTACGACGAGGGGGGTCGCCCCTAGTACATCTGCAA 2685595 25 100.0 41 ......................... AGATCTTACCCACATCCGCCTCATGTCTAAAAGTAATATTT 2685661 25 100.0 42 ......................... TGATATGACTTTCAAAGCGACCTTCTTCCCTACCTCATTTTC 2685728 25 100.0 40 ......................... ACACAGAAAAGTAAACCGTTAGTCCCTGCACAAATAGAGA 2685793 25 100.0 38 ......................... GTATTCCCAAAGCTTATGAATTCATATTTCACATTTAT 2685856 25 100.0 41 ......................... TTCCATATTTCAATGATAGAAAAAATATCAATGTCAATATA 2685922 25 100.0 41 ......................... TTCCATATTTCAATGATAGAAAAAATATCAATGTCAATATA 2685988 25 100.0 40 ......................... CACGAGCATTAATCCATGTTTTATTTAGAGCATTAAAACA 2686053 25 100.0 40 ......................... ATAGAGGACTTAAGGAGTGGTTATGGAAGAATAATTTTAT 2686118 25 100.0 42 ......................... GGTATAAGAATAACAAAGAGCACTATACACCGCATATTCTTC 2686185 25 100.0 39 ......................... GTATGTCGTTATGAACTACGTTATTGGATTCATCGTTAG 2686249 25 100.0 37 ......................... AAGAACAATTTTAGCATATAATCCATTATTGATTATT 2686311 25 100.0 39 ......................... AATCCATCTAATTCAATTCAACCTGTTTTTTCTTCAAAC 2686375 25 100.0 34 ......................... CCATAGAGAATGTTATAATAGTTGATGATTACAC 2686434 25 100.0 39 ......................... ATGATTCCCCTTTGAATGACGTCAGGAAACGTCGTAAAG 2686498 25 100.0 34 ......................... TTTTTCTGAGTCTTTATAGCAATACACTCGTTTA 2686557 25 100.0 43 ......................... TTAATTCCACAACCACCAATTTCACAACCACAACACCAGCCAG 2686625 25 100.0 39 ......................... AATAATTTGATTACTTTATCGTAGAACTCCTTTTCCTTT 2686689 25 100.0 37 ......................... AAAAATATCTCAATAATATTGTCAGATGGCACTTCAA 2686751 25 100.0 38 ......................... ATAATCGCATAATCCGCAATATAATAACCCATCACCAA 2686814 25 100.0 39 ......................... CTCCTTGAGGCACTGTGATATTCTCGGCTCTCGCAAATC 2686878 25 100.0 41 ......................... CTTTCTTTTCCTTCTTCTGTTCAAGAAGCTTTATTAGGAAT 2686944 25 100.0 39 ......................... AGCTGAACTTCATCTGGAGATATTTCCAGGTCACTGTTT 2687008 25 100.0 36 ......................... AGGTTTCTTTGTTGATACCACTTATATAATTCGTAT 2687069 25 100.0 38 ......................... TTAAATATCGTTATGTTGATTTCTTCACCTAACGTCTT 2687132 25 100.0 40 ......................... ATACGACAACTGTCACCGCCATAACGTTTGACTCTCTTAG 2687197 25 100.0 38 ......................... TTAAGGGCCGTTTTCAACACGTCTATATCACGTTTAGT 2687260 25 100.0 36 ......................... AGCCAGACTAAAAAATTGAATACATCACATGCATTA 2687321 25 100.0 40 ......................... TGTATTGAAGTTCCGTAACATAGTTAACAACCTTTCCGTT 2687386 25 100.0 41 ......................... GGTTAATAATAAACAACAATCGAAATATATTAGCATTAGCC 2687452 25 100.0 39 ......................... TAATAAAAAATTAGCTTTGACTTGAAACTTGTACTGTTT 2687516 25 100.0 39 ......................... TCCCCGCCTTTGGCGGGGTCGATTTTTTATTCTTGCCTC 2687580 25 100.0 39 ......................... TTTAAAGCGTTAATAAAGTCGTTACCGATTTCGTTTAAT 2687644 25 100.0 39 ......................... GACGTCTTCTTCTTCTAACGTTTCTTCTTCTACGTTTAA 2687708 25 100.0 43 ......................... GTACTTCCAATAGGTTCAAACGTTATGATTTCTTTGTTGTTCT 2687776 25 100.0 42 ......................... TTAATAAAATCTTTTATTTTCTCTTCATCTATTATAAAGATT 2687843 25 100.0 53 ......................... ATTTTACTAAAGTTGCAACTTCTAGTTCCTTCTCGTGCTTCATACTTTTTAAT 2687921 25 92.0 0 .........AA.............. | ========== ====== ====== ====== ========================= ===================================================== ================== 41 25 99.8 40 GATGAATCCTCAAAGGAATTGAAAG # Left flank : TATTCTTTCAGAACTAATTGTGTGATTAGGTACCGTAAATGTTATTGAGCTTTAAAATCGTGTATTTTTGTATAGTGTTTAGTTTCTCGCTGTTTATGATTTGACGTAAAAACCGTGGGTTAAAAGTGTTTTTATAAGTATTTCTATCACGTGTAATTGAGTAATTTTTGTTATATTCTATCATTTCTTTAAAAATGTTTAACGTGATGATACTATTCCAGGGAAGGAAGAGTTCAAATTAACTATGTGAAATCTCCTATTTTTACAAGAGATTTAAAAACGTAAATTTATTAAAACCGGTGCGACCAATACGATAATAGTACCGTATCACTAACATTTATAAATTAACTCTTTAATTCAATTCAGCATTTGAACAATGCGACCAAAAAAGGGAAAAGAAATTACTAGGAAAAACGGTCGCAAGAAGGAAAAACCTTGAAAACAAAAACTTATAAAGGAGAAAAACGAAAAATGAAGTAAAGTAGTATAAAAACAAAACA # Right flank : GACAATTAACAGAAGGAACAGAACCATTGGGATAATTTCTAAAGGTTGAAACTCGAAAAGGCAAGATAAAAGGCTTTAGATTATGAAGAGTTAAACCAAATTAGTGATATGAAATTAGAATCCCCACACACCTAGAGATCAGTAAACTGAGAAGTGAGCTTCTATATCTTCCTTCATATTCACTAAATATCGGGATAAATTTTAGAGATTATTCTATAGACTAGCAGTAGTTGAGGGTCAAGTAATAATATGGGTTAATTTAATTTACCTCTTTTAGGTATAAGGAAGGAGTATTAAATGTTTAGAGAAACGAAAAATGAGAATATTTGTTAAGTTCTTTAAAACGAATTTTACAGTATAAGACCTTTGTATCATCATGATTATCGTAAATTTCTATATAATATAAATAGAATATAAGAAATCAATATCATAGTTTCACTTTTTATGTAGATTTTCCTTAATTCAATAAGTTTATATAACTATGCAACACTACGAGATAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCTCAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 6 2707234-2703161 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045484.1 Sulfurisphaera ohwakuensis strain TA-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 2707233 25 100.0 38 ......................... ATAACCATTTCATTATTCTCTTCTGTGAAATAGTCTAC 2707170 25 100.0 38 ......................... TACTAGACAACAGCGGGTCGATGTCATGGTTGGGAAAC 2707107 25 100.0 40 ......................... TCATGAATTTTTATGTATAGGCTCCCTATTTTTGAAAATA 2707042 25 100.0 39 ......................... ATTTACTCGATCTAACGAAGGACATGGGTGGTTAGTTTG 2706978 25 100.0 41 ......................... ATATACTGCAGTACCTTCCCCAACAACCAGTTATAGTAAAT 2706912 25 100.0 38 ......................... TTTGTAGTAAGGAGTTGTTCCCTCTCATATTTAGGTAA 2706849 25 100.0 36 ......................... ATAAGATCATCATCCAAACGTTAGCCGATACTTTAC 2706788 25 100.0 35 ......................... ATATTTTGAACTTGAGCATCTTTTTGCATAGTCAT 2706728 25 100.0 38 ......................... TGTTGACTATCATTACTTTCAGTTTGTTGTTCATCTTC 2706665 25 100.0 34 ......................... AATATAACGTAGTCTTCTACGTATGCTTCAAATT 2706606 25 100.0 39 ......................... TATTCAAATTCAAACGACATCTTACCACCCATATTACTC 2706542 25 100.0 37 ......................... ACAACAGCAATATTGGTTAGATTTGCACGAAAACGAT 2706480 25 100.0 38 ......................... TAGTTTTGTCACTTACTTTGTGAATGATTGGGATAAAT 2706417 25 100.0 41 ......................... ATACGTACAGACACCCTAGCGTTTTGCAAAAAGTCTAATAG 2706351 25 100.0 40 ......................... TTATTTTGTGTTAAAGGTATAAACGTGATTACTGATTTCC 2706286 25 100.0 39 ......................... TGTGAACTTAATCATTGTCTCAACTCCTTTGATAAATTT 2706222 25 100.0 38 ......................... CTCCAAAATCCTGAATTCCTTGAAATTCTCCTCTGAAG 2706159 25 100.0 37 ......................... TTCTCTATCATTTGTGTAGAGAAAGATTTAAATAGTT 2706097 25 100.0 35 ......................... TACTACCACCATCACCCTACCAATATATCCTGAAA 2706037 25 96.0 40 T........................ ACTATTATTTGGACATTTTCTAGTTCAGAATCTTTAACTA 2705972 25 100.0 41 ......................... TTTAGATGTTGATATAATTGGCGTAACAGACGTTGAGCGTA 2705906 25 100.0 37 ......................... AATGACCCCCAGTTCTGTCAACAATTTCCTAGTTTAT 2705844 25 100.0 39 ......................... CAATAGCGTTTAATCTTATCTCGTTATTGTTCATCAACT 2705780 25 100.0 40 ......................... ATAAACGTTTAGAAAATGGTATTATTGCTAACGACATATT 2705715 25 100.0 38 ......................... GTATAGGTGGCTGAGGCAACCATACAAGCCCATCAAAC 2705652 25 100.0 41 ......................... TGTTTTGGATTTTCACTTTTTTTTCACCCAACATCAACATT 2705586 25 100.0 38 ......................... TTGACTCGCCAAAAATAACATTTTGTACACGTTACCAG 2705523 25 100.0 38 ......................... TCTCTAGGGGGAGAACATTCTCTCCATAGGGGAAAAAG 2705460 25 100.0 38 ......................... TCTTAAAAAAGACCATGTCTACCGTCAACTTCTTCAGT 2705397 25 100.0 39 ......................... ATTTCTCTCGCCCAGACCAAATCCATTTTTCTACTTTGC 2705333 25 100.0 43 ......................... AAGAAGTCGTTAGCGATTTCGTTTAATTCGTCATAGTAATAAA 2705265 25 100.0 39 ......................... CACCATGTTTTGTAACATTGCGTTAATAAATATCGTAAT 2705201 25 100.0 39 ......................... TATTCCGTTTCTGAAGTCGTATTCTAACGTAACTATAAC 2705137 25 100.0 40 ......................... ATTAAAGACAACCCAGCGTTTATCCGCTTCTTAACGATGG 2705072 25 100.0 42 ......................... GTTACCGTCTTAATATATAGTTCCTTGAGCTTATCCACTATT 2705005 25 100.0 39 ......................... AGGAACCAATATTTTCCTACCTTTCATGTTTACTTGCTC 2704941 25 100.0 40 ......................... ATAGCATTAGAAACTGCTTTCCCCATTGCCTTCATTGTTA 2704876 25 100.0 40 ......................... AATATGTCGTTCTGGTCACCGTTTAAATCGCTAAATATGT 2704811 25 100.0 37 ......................... TTTGACAACATTTACAGCGTAATAACGTTATGTTATC 2704749 25 100.0 39 ......................... TTATGATACGCCAAAAGATATGCTAAGAGCTCAATAACG 2704685 25 100.0 39 ......................... GAAATCAATCCTTTTGAAGATCTGTTGCATAGTCCATCG 2704621 25 100.0 38 ......................... ACCATTTTTAGCTCACCATTTTTTTAATTGGAAATAAT 2704558 25 100.0 41 ......................... ATTAAATTAGCCGTTGCTTTACCTAATGCTATTAATTTGAC 2704492 25 100.0 42 ......................... ATTGAAACAATGACAGACATCTCGCTCTTGCCATCAACGACT 2704425 25 100.0 40 ......................... GATAGAAGGGGAAAAATTTATTTTTTTAAAAGCTGTATAC 2704360 25 100.0 40 ......................... CGTTTATATATCGTCTTAATGCATTAACGAAACGTTGAAC 2704295 25 100.0 45 ......................... CTCTACATTAATTTCAACCTTACTACTATTCGTTAAATATGCCAG 2704225 25 100.0 39 ......................... GGTTTATTCTTAATTACTCTTTCATAAAGTGCGTCTTCT 2704161 25 100.0 38 ......................... CTTTTTTCATCGTTAACTCATTATTTATTGTGTACAAA 2704098 25 100.0 40 ......................... TCCATTTGGATCTGTCTTTCAATATGGCGTAAATTTCGTC 2704033 25 100.0 39 ......................... AAGACCACTTCCCCCGAAACGCGGGGGCTCTATACTAAT 2703969 25 100.0 40 ......................... GTGATACAGGTTTAAACGCAATAACTTCCTTGCCATTTTT 2703904 25 100.0 40 ......................... TAGTTATTGCAATCCACCATTTTCTATCAAAAAACTATTC 2703839 25 100.0 34 ......................... TGAAATCATACAGTCTTGCTTTTAGGGCATTTAG 2703780 25 100.0 39 ......................... ACGTTATACGCTCTAGCGAAAAATCCTTTGAAGTCGTTT 2703716 25 100.0 41 ......................... ACTAGGATATCGAAAGCGGTACTCCATTCAAATGTCTTCAT 2703650 25 100.0 40 ......................... TATCTAGTATCATTAACACTCTAAACTTATATTGCCTTGA 2703585 25 100.0 39 ......................... AATTCATTTTTCATTTTCCCCCACCTCACTCTAATATTA 2703521 25 100.0 40 ......................... TAAACCTCATCAACCTTGCCATAATATTTTTCAATATACA 2703456 25 100.0 39 ......................... TTTCCATCTACATATACACCATGACTATACAATATACCA 2703392 25 100.0 40 ......................... GTCGCTTTTACGTTGATTATGCCAGCGTAATATAACCTAA 2703327 25 100.0 51 ......................... TGATTTCTTTTGCAATCTCTTGAATATTACTCATTGTAACTCACCTAATTC 2703251 25 88.0 40 ...A.....CA.............. TTTTCCAGTTCATCTTTTTCCCGTTAATCTCCTTCATGCC 2703186 24 88.0 0 .....T..-...............A | T,A [2703163,2703172] ========== ====== ====== ====== ========================= =================================================== ================== 64 25 99.6 39 GATGAATCCTCAAAGGAATTGAAAG # Left flank : TTACCCTATCCCCTTTACCCCAGTTCTTCTCACTCCGAGGTGTAAGGACAAACTCACCTTATACTGTTATTAAAACTGTTTAATATATCATCGTATAGTTTTTTACGTAAAAACCGTGGGTTAAAAGTGTTTTTATAAATATTTCTATCACGTGTAATTGAATAATTTTTGTTATATTCTATCATTTCTTTAAAAATGTTTAACGTGATGATACTATTCCAGGGAAGGAAGAGTTCAAATTGATTACGTAGAATCTCCGATTTTTACGATAGATTTAAAAACGTAAATTTATTAAAACCGGTGCGACCAATACGATAATAGTACCGTATCACTAACATTTATAAATTAACTCTTTAATTCAATTCAGCATTTGAACAATGCGACCAAAAAAGGGAAAAGAAATTACTAGGAAAAAAGGTCGCAAGAAGAAAAACCTTGAAAACAAAAACTTATAAAGGAGAAAAACGAAAAATGAAGTAAAGTAGTATAAAAACAAAACA # Right flank : TATACAGCAAGGGATAAAAGGGTGATAAATAAATTATTACGACAATAAAGAGAAGTTACCAGATTATCTTATCCTCATTTTCCTTAAACTCATCTCCGATCATAATCCTCTGATTAAACATTGCCTGCGTTACCGGTAAGATCATTACCGAAAACCTTCCCTCCTTATTCAACCTATAGAGAACTCTAAGCGAAGCTATAACGTCTTTTAATCTCGCTGAGTTCAGATCCCCAATGAACACACTGTACTGTACCCTGATCAAACCCTTTTTCTTTAGCACATCAGCTACTTTATTTCTCATCCCATCATCACTTATATCATAAAATACTATGTACAACATTTCACTTCGCCATAAAGGGTCTATATTCATCTCCGTGGAGTATTGAGTTTACAAGCCTCCTAGCTTGAGTGTATATTTCGTCCTCATCAAAAACGAAGGTGGAGTAAACCACTTTTAAGTCTTTTAACTTCTCATAGTTTTCTCTTGCAAGTCCTATTAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCTCAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //